View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4926_high_5 (Length: 361)
Name: NF4926_high_5
Description: NF4926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4926_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 11551680 - 11551355
Alignment:
| Q |
17 |
agcagagaacggaaaccacaaagcaaatcgacattcacacaaaatttatcttgtggctcaggcaattgttggggaactgtgaagagctacatactttgaa |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11551680 |
agcagagaacggaaaccacaaaggaaatcgacattcacacaaaatttatcttgtggctcaggcaattgttggggaactgtgaagagctacatactttgaa |
11551581 |
T |
|
| Q |
117 |
cattcaaattgaaagttatgagacaaagaagagaggctggtgcgggaagaaaagcctttacaattgacaggttctgcacaagttttactcnnnnnnncat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11551580 |
cattcaaattgaaagttatgagacaaagaagagaggctggtgcgggaagaaaagccttgacaattgacaggttctgcacaagttttactctttttttcat |
11551481 |
T |
|
| Q |
217 |
cctctctatatgatagataggaatgaatcaaagaaaaatggtaactgcattattttgtatgaaagaaaaagggtgacctgaaactgtttcagccaacaga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11551480 |
cctctctatatgatagataggaatgaatcaaagaaaaatggtaactgcattattttgtatgaaagaaaaagggtgacctgaaactgtttcagccaacaga |
11551381 |
T |
|
| Q |
317 |
aaatagtagaatttcaaattgaaacg |
342 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
11551380 |
aaatagtagaatttcaaattgaaacg |
11551355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 11546820 - 11546506
Alignment:
| Q |
17 |
agcagagaacggaaaccacaaagcaaatcgacattcacacaaaatttatcttgtggctcaggcaattgttggggaactgtgaagagctacatactttgaa |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
11546820 |
agcagagaacggaaaccacaaaacaaattgacattcacacaaaacatctcttgtggctcagg---ttgttggggaactgtgaagagctacatactttgga |
11546724 |
T |
|
| Q |
117 |
cattcaaattgaaagttatgagacaaagaagagaggctggtgcgggaagaaaagcctttacaattgacaggttctgcacaagttttactcnnnnnnncat |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| ||| |
|
|
| T |
11546723 |
cattcaaattgaaatttatgagacaaagaagagaggctggtgtgggaagaaaaacc-------atgacaggttctgcacaagttttactctttttttcat |
11546631 |
T |
|
| Q |
217 |
cctctctatatgatag-----ataggaatgaatcaaagaaaaatggtaactgcattattttgtatgaaagaaaaagggtgacctgaaactgtttcagcca |
311 |
Q |
| |
|
|| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11546630 |
ccactctatatgatagatatcatatgaatgaatcaaagaaaaatggtaactgcattattttgtaagaaagaaaaagggtgacctgaaactgtttcagcca |
11546531 |
T |
|
| Q |
312 |
acagaaaatagtagaatttcaaatt |
336 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
11546530 |
acagaaaatagtataatttcaaatt |
11546506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 214 - 340
Target Start/End: Original strand, 11561998 - 11562124
Alignment:
| Q |
214 |
catcctctctatatgatagataggaatgaatcaaagaaaaatggtaactgcattattttgtatgaaagaaaaagggtgacctgaaactgtttcagccaac |
313 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11561998 |
catccactctatatgattgatatgaatgaatcaaagaaaaatggtaacttcattattttgtatgaaagaaaaagggtgacctgaaactgtttcagccaag |
11562097 |
T |
|
| Q |
314 |
agaaaatagtagaatttcaaattgaaa |
340 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
11562098 |
agaaaatagtagaatttcaaattgaaa |
11562124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 11561830 - 11561957
Alignment:
| Q |
17 |
agcagagaacggaaaccacaaagcaaatcgacattcacacaaaatttatcttgtggctcaggcaattgttggggaactgtgaagagctacatactttgaa |
116 |
Q |
| |
|
||||||||| | |||||||||| ||||| |||||||||||||||||| ||||| | |||||| || ||||||||||||||||||||| |||||| |
|
|
| T |
11561830 |
agcagagaatgaaaaccacaaaacaaattgacattcacacaaaatttctcttg-------gacaattgatgtggaactgtgaagagctacataatttgaa |
11561922 |
T |
|
| Q |
117 |
cattcaaat-tgaaagttatgagacaaagaagaga |
150 |
Q |
| |
|
| ||||||| ||||| |||||||||||||||||| |
|
|
| T |
11561923 |
ctttcaaatatgaaatctatgagacaaagaagaga |
11561957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University