View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4926_low_1 (Length: 512)
Name: NF4926_low_1
Description: NF4926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4926_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 402
Target Start/End: Complemental strand, 28693740 - 28693359
Alignment:
| Q |
17 |
cacagagcacatcatcagatacatcactataaatagagtgtctccttacatgtatgatcacacatatattactcatcccacttttacttgtattgatatc |
116 |
Q |
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| T |
28693740 |
cacagagcacatcatcagatacatcactataaataaagtgtctccttgcatgtatgatcacacatatattactcatcccacttttacttgtattgatatc |
28693641 |
T |
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| Q |
117 |
gatctaccagcaccttacttatttggacaagcataccctggttcccctgtttggagaaggagcatatgactagtcgaagtgaatctattcatcagtgtga |
216 |
Q |
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| T |
28693640 |
gatctaccagcaccttacttatttggacaagcataccct----cccctgtttggagaaggagcatatgactagtcgcagtgaatctgttcatcagtgtga |
28693545 |
T |
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| Q |
217 |
agaccacacctcctactcgattagaaggtacaccccacttgttaatacaagatcaagttagtttatgtgaaccgcatgaaccctctaatcattgaggcgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28693544 |
agaccacacctcctactcgattagaaggtacaccccacttgttaatacaagatcaagttagtttatgtgaaccgcatgaaccctctaatcattgaggcgt |
28693445 |
T |
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| Q |
317 |
tccaaagtgatcaacaaataggcatatgtcaaaataaaaatgttgtacatgtttggcatgaaagaaattaaagtagtctcatagta |
402 |
Q |
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| T |
28693444 |
tccaaagtgatcaacaaataggcatatgtcaaaataaaaatgttgtacatgtttggcatgaaagaaattaaagtagtctcagagta |
28693359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 493
Target Start/End: Complemental strand, 28692952 - 28692924
Alignment:
| Q |
465 |
taaatttaatggctataaaaatggttctt |
493 |
Q |
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| T |
28692952 |
taaatttaatggctataaaaatggttctt |
28692924 |
T |
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