View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4926_low_11 (Length: 250)
Name: NF4926_low_11
Description: NF4926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4926_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 12155860 - 12155615
Alignment:
| Q |
1 |
catttctaaaaatattatgtaaattcnnnnnnnatgtaggcttttcatgaaattgatgacaaactattatcatttttaccatgtcataatatgaagtgtg |
100 |
Q |
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| T |
12155860 |
catttctaaaaatattatctaaattctttttctatgtaggcttttcatgaaattgatgacaaactattatcatttttaccatgccacaatatgaagtgtg |
12155761 |
T |
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| Q |
101 |
gagaaatgataagagtataaatttgacatagtggaagataacgtattataaggtttgttgttgttacgatggcaaaatccatattacttttagaattctt |
200 |
Q |
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| T |
12155760 |
gagaaatgataagagcataaatttgacatagtggaagataacgtattataaggatggttgtttttacgatgacaaaatccatattacttttagaattctt |
12155661 |
T |
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| Q |
201 |
catttccatgtttgta-aacccagagattttatgtcttcatctgtg |
245 |
Q |
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| T |
12155660 |
catttccatgttcgtataacttagagattttgtgtcttcatttgtg |
12155615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 90 - 212
Target Start/End: Original strand, 43860719 - 43860841
Alignment:
| Q |
90 |
tatgaagtgtggagaaatgataagagtataaatttgacatagtggaagataacgtattataaggtttgttgttgttacgatggcaaaatccatattactt |
189 |
Q |
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| T |
43860719 |
tatgaagtgtggaaatatgatatgagcataaatttaacagagtagaagataaagtattataaagtttgttgttgttataatggcaaaatccatattattt |
43860818 |
T |
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| Q |
190 |
ttagaattcttcatttccatgtt |
212 |
Q |
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| T |
43860819 |
ttagaattcttccttttcatgtt |
43860841 |
T |
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