View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4926_low_3 (Length: 479)
Name: NF4926_low_3
Description: NF4926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4926_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 13 - 328
Target Start/End: Original strand, 15663830 - 15664145
Alignment:
| Q |
13 |
atcatcacgatccattagttttaccaattcctccacaaagtgaacatgatttgctcccgctgcaatatggagtgcggttgcccacccatttgttatggca |
112 |
Q |
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| T |
15663830 |
atcatcacgatccattagttttaccaattcctccacaaagtgaacatgatttgctcccgctgcaatatggagtgcggttgcccacccatttgttatggca |
15663929 |
T |
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| Q |
113 |
gaaatcagcaatgtttggtcctgttctattannnnnnnaccttctttccaatccccttttagtgctgctttgtgaaggggaacacattggtttatgtacc |
212 |
Q |
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| T |
15663930 |
gaaatcagcaatgtttggtcctgttctattatttttttaccttctttccaatccccttttagtgctgctttgtgaaggggaacacattggtttatgtacc |
15664029 |
T |
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| Q |
213 |
nnnnnnnatgttcctctgcaatgaaattgattgagggattaattaactcgcttcaatatctatacaattgataagaaaactcattttaagatatcaatat |
312 |
Q |
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| T |
15664030 |
tttttttatgttcctctgcaatgaaattgattgagggattaattaactcgcttcaatatctatacaattgataagaaaactcattttaagatgtcaatat |
15664129 |
T |
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| Q |
313 |
ataatggtctaatatt |
328 |
Q |
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| T |
15664130 |
ataatggtctaatatt |
15664145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 324 - 464
Target Start/End: Original strand, 15664205 - 15664345
Alignment:
| Q |
324 |
atattagaggaaacatttcccttgttttattctataagtacgactcaaatggtaaaaggctgcataaatatttgatatatttacacgcagctttgaattc |
423 |
Q |
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| T |
15664205 |
atattagaggaaacatttcccttgttttattctataagtacgactcaaatggtaaaaggctgcataaatatttgatatatttacacgcagctttgaattc |
15664304 |
T |
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| Q |
424 |
gtagttgctcacttctcatcactaagaatgtggtagactct |
464 |
Q |
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| T |
15664305 |
gtagttgctcacttctcatcactaagaatgtggtagactct |
15664345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 402
Target Start/End: Complemental strand, 28739480 - 28739435
Alignment:
| Q |
357 |
ataagtacgactcaaatggtaaaaggctgcataaatatttgatata |
402 |
Q |
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|||| ||||||||||||||||||| | ||||| ||||||||||||| |
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| T |
28739480 |
ataactacgactcaaatggtaaaatgatgcatgaatatttgatata |
28739435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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