View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4927-Insertion-2 (Length: 837)
Name: NF4927-Insertion-2
Description: NF4927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4927-Insertion-2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 388 - 837
Target Start/End: Complemental strand, 48451404 - 48450948
Alignment:
| Q |
388 |
cacataaactgagtttttgcaaactgtgtttgaaatacagtcagtacaaaaacaagtagtgagacataagttaagtgcagaatatcaaacacatactata |
487 |
Q |
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| T |
48451404 |
cacataaactgagtttttgcaaactgtgtttgaaatacagtcagtacaaaaacaagtagtgagacataagttaagtgcagaatatcaaacacatactata |
48451305 |
T |
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| Q |
488 |
taagagaaattcaaagaacaaaagaactattcaattttaattaataaaatatgagtttctcaacagattctcggcagaagaatccaccatctggg----- |
582 |
Q |
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| T |
48451304 |
taagagaaattcaaagaacaaaagaactattcaattttaattaataaaatatgagtttctcaacagattctcggcagaagaatccaccatctgggggggg |
48451205 |
T |
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| Q |
583 |
---aagcacacatgtaacacatccaagacaaactataacaaatgttggtaatacttgctagttgctacaatgatgaagctatatcaggagtttctaaaca |
679 |
Q |
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| T |
48451204 |
gggaagcacacatgtaacacatccaagacaaactataacaaatgttggtaatacttgctagttgctacaatgatgaagcaatatcaggagtttctaaaga |
48451105 |
T |
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| Q |
680 |
aaaaagagcagcaacggttttatttttatttatttctcatccctttatattacagactaaactctgtctctggctaaaacagccaattcatatctgatgc |
779 |
Q |
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| T |
48451104 |
aaaaagagcagcaacggttttatttttatttatttctcatccctttata-tacagactaaactctgtctctggctaaaacagccaattcatatctgatgc |
48451006 |
T |
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| Q |
780 |
aaaagccataatgaaagctagatattcgtttgtccacaacattttctccactcttaat |
837 |
Q |
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| T |
48451005 |
aaaagccataatgaaagctagatattcgtttgtccacaacattttctccactcttaat |
48450948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 8 - 318
Target Start/End: Complemental strand, 48451783 - 48451473
Alignment:
| Q |
8 |
atgcgagcccgggattgtcaaatagagatgaatccttgtgagcagttctattttcgttgatagcagctactaacttgtccgcagggttatcagtaatttt |
107 |
Q |
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| T |
48451783 |
atgcgagcccgggattgtcaaatagagatgaatccttgtgagcagttctattttcgttgatagcagctactaacttgtccgcagggttatcagtaatttt |
48451684 |
T |
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| Q |
108 |
gactgcaaagttttcataatgtcacacaaatgttaatttagagaacacacaagtgggtaacagtgaatgcaataaaagaaatttaatcacatagtaagga |
207 |
Q |
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| T |
48451683 |
gactgcaaagttttcataatgtcacacaaatgttaatgtagagaacacacaagtgggtaacagtgaatgcaataaaagaaatttaatcacatagtaagga |
48451584 |
T |
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| Q |
208 |
aataaatataactatgaggtagggattcagaatgatagataagttgatatttgagaattttcactttttcagtaagccaaaagtaggctgtttattgtga |
307 |
Q |
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| T |
48451583 |
aataaatataactatgaggtagggattcagaatgatagataagttgatatttgagaattttcactttttcagtaagccaaaagtaggctgtttattgtga |
48451484 |
T |
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| Q |
308 |
cgaaagtagcc |
318 |
Q |
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| T |
48451483 |
cgaaagtagcc |
48451473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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