View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4927-Insertion-3 (Length: 732)
Name: NF4927-Insertion-3
Description: NF4927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4927-Insertion-3 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 525; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 8 - 732
Target Start/End: Complemental strand, 26507854 - 26507121
Alignment:
| Q |
8 |
aatgcttactccagtcacaaatgccataaaaatgaaggtttcatgcaattattacaacaaaagagtcacacatatggttattagtacatctttattagta |
107 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26507854 |
aatgcttactccagtcataaatgctataaaaatgaaggtttcatgcaattattacaacaaaagggtcacacatatgattattagtacatctttattagta |
26507755 |
T |
|
| Q |
108 |
ggttctcttactatagctgtgaccattcccttatttggatatcctatgtcacttgttggagcattgttaagtgtctcagcttcaattttagtgccatcaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26507754 |
ggttctcttactatagctgtgaccattcccttatttggatatcttatgtcacttgttggagcattgttaagtgtctcagcttcaattttagtgccatcaa |
26507655 |
T |
|
| Q |
208 |
tttgctacttgaagatttcaggatcatacaagagatttgggtgtgaaatggttattaattattcaataattgtaatgggggttgctattgctgtttttgg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26507654 |
tttgctacttgaagatttcaggatcatacaagagatttgggtgtgaaatggttattaattattcaataattgtaatgggggttgctattgctgtttttgg |
26507555 |
T |
|
| Q |
308 |
tacttatagatctcttgtagatataattcagaatttgtaagtttctttggatagaaacattttcctcctatagagagaatggtgtaatcggaacttaatt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26507554 |
tacttatagatctcttgtagatataattcagaatttgtaagtttctttggatagaaacattttcctcctatagagagagtggtgtaatcggaacttaatt |
26507455 |
T |
|
| Q |
408 |
tgccttgcaaattactttatttcttggttatataaaatactattgttaattagaggtcttgttatggtttgatcatgtttaggagatttgtgttatgacn |
507 |
Q |
| |
|
|||||||||||||||||| | | | | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26507454 |
tgccttgcaaattacttt-tatat---aaaattaaaatacttttgttaattagaggtcttgttatggtttgatcatgtttaggagatctgtgttatga-- |
26507361 |
T |
|
| Q |
508 |
nnnnnnnnnnnnnnnnnggtttgttgagtttgctagggctaaaatgagatgagtcg-----agatactcgataataattagttcagcttgatatgaatct |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26507360 |
--gaaaaaaaacagaaaggtttgttgagtttgctagggctaaaatgagctgagtcgaactcacatactcgataataattagttcagcttgatatgaatct |
26507263 |
T |
|
| Q |
603 |
tttcttaactcgatatgtattactcta------------ttgtttcttggtttgattctcttccaaatttgtatcatgtacctataccaaaacctacttg |
690 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26507262 |
tttcttaactcgatatgtattaccctattgttcctctgcttgtttcttggtttgattctcttccaaatttgtatcatgtacctataccaaaacctacttg |
26507163 |
T |
|
| Q |
691 |
tgtggatcattattaatctctggtctagacgattctggttga |
732 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26507162 |
tgtggatcattattaatctgtggtctagacgattctggttga |
26507121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 26478584 - 26478244
Alignment:
| Q |
10 |
tgcttactccagtcacaaatgccataaaaatgaaggtttcatgcaattattacaacaaaagagtcacacatatggttattagtacatctttattagtagg |
109 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| |||||||||| ||||| ||| || |
|
|
| T |
26478584 |
tgcttactccagtcataaatgccataaaaataaaggtttcatgcaactactacaacaaaaggttcacacatatgattattagtacgtctttgttaataat |
26478485 |
T |
|
| Q |
110 |
ttctcttactatagctgtgaccattcccttatttggatatcctatgtcacttgttggagcattgttaagtgtctcagcttcaattttagtgccatcaatt |
209 |
Q |
| |
|
|||||||| |||||| ||| | ||||| ||||||| ||| | ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |
|
|
| T |
26478484 |
ttctcttattatagcagtggctattcctttatttgcataccttatgtcacttgttggagcattattatgcatctcagcttcaattttagtgccatcaatt |
26478385 |
T |
|
| Q |
210 |
tgctacttgaagatttcaggatcatacaagagatttgggtgtgaaatggttattaattattcaataattgtaatgggggttgctattgctgtttttggta |
309 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| |
|
|
| T |
26478384 |
tgttacttgaagatttcaggtgcatacaagagatttgggtatgaaatggttattaattattcaatcattgtagtgggggttgctattgctatttttggta |
26478285 |
T |
|
| Q |
310 |
cttatagatctcttgtagatataattcagaatttgtaagtt |
350 |
Q |
| |
|
| ||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
26478284 |
cctatagatctctggtagatataattcaaaacttgtaagtt |
26478244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University