View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4927-Insertion-4 (Length: 460)

Name: NF4927-Insertion-4
Description: NF4927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4927-Insertion-4
NF4927-Insertion-4
[»] chr3 (1 HSPs)
chr3 (10-460)||(39527199-39527668)


Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 10 - 460
Target Start/End: Original strand, 39527199 - 39527668
Alignment:
Q  10 aaaaactaagcaaactaattccacaagcaaacagagcatagtgtacaatagaaaacacaaagagaggtagggactggggagctaactttttcaatcattc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  39527199 aaaaactaagcaaactaattccacaagcaaacagagcatagtgtacaatagaaaacaca--gagaggtagggactggggagctaactttttcaatcattc 39527296  T
Q  110 agtgcttctctgataaatacttatcataacagtaagacaaatatcaatcttaaagaatgcataataattaatctcaaataataacagttaagtgtaa--- 206  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  39527297 agtgcttctctgataaatacttatcataacagtaagacaaacatcaatcttaaagaatgcataataattaatctcaaataataacagttaagtgtaaaac 39527396  T
Q  207 ------------------taacagcaaaacaggcttccactagctggggaagacctagataaatttctgtcatggatcaagtgttaagataggtttgttt 288  Q
                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39527397 aattttacacaacagaaataacagcaaaacaggcttccactagctggggaagacctagataaatttctgtcatggatcaagtgttaagataggtttgttt 39527496  T
Q  289 atctctaaatctctcgttagtttggcctataatttttcctaacttgcccatatgttggactatactccatttagtcagccagtgcttttaattcttctcc 388  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39527497 atctctaaatctctcgttagtttggcctataatttttcttaacttgcccttatgttggactatactccatttagtcagccagtgcttttaattcttctcc 39527596  T
Q  389 acacgtgctatcttccaagaaatgtatttttgttcctatcttatcttgtgtaaaccacttatcgttgtaaca 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39527597 acacgtgctatcttccaagaaatgtatttttgttcctatcttatcttgtgtaaaccacttatcgttgtaaca 39527668  T

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