View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4927-Insertion-5 (Length: 365)

Name: NF4927-Insertion-5
Description: NF4927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4927-Insertion-5
NF4927-Insertion-5
[»] chr5 (17 HSPs)
chr5 (8-361)||(7857026-7857379)
chr5 (89-361)||(6902401-6902677)
chr5 (36-361)||(26876176-26876506)
chr5 (8-171)||(40410591-40410754)
chr5 (10-159)||(17518431-17518580)
chr5 (33-88)||(9689339-9689394)
chr5 (9-216)||(10571113-10571320)
chr5 (206-278)||(27786402-27786474)
chr5 (206-278)||(28594254-28594326)
chr5 (33-84)||(26795640-26795691)
chr5 (208-278)||(2276018-2276088)
chr5 (33-88)||(1152338-1152393)
chr5 (33-84)||(26806704-26806755)
chr5 (208-278)||(9689158-9689228)
chr5 (34-84)||(26806583-26806633)
chr5 (34-82)||(26795521-26795569)
chr5 (33-88)||(28594445-28594501)
[»] chr1 (21 HSPs)
chr1 (8-359)||(9191132-9191488)
chr1 (185-353)||(49459886-49460055)
chr1 (33-271)||(36402273-36402511)
chr1 (8-88)||(26882829-26882909)
chr1 (8-84)||(42657715-42657791)
chr1 (8-88)||(45318461-45318541)
chr1 (204-278)||(48194787-48194861)
chr1 (33-159)||(1928336-1928462)
chr1 (8-82)||(27198272-27198346)
chr1 (204-278)||(27198468-27198542)
chr1 (206-278)||(48203547-48203619)
chr1 (204-278)||(19007393-19007467)
chr1 (33-84)||(25612066-25612117)
chr1 (33-84)||(38536287-38536338)
chr1 (33-84)||(38558505-38558556)
chr1 (33-84)||(51826843-51826894)
chr1 (33-88)||(52705419-52705474)
chr1 (33-82)||(9831325-9831374)
chr1 (200-276)||(14555126-14555202)
chr1 (246-278)||(42657953-42657985)
chr1 (34-86)||(50192789-50192841)
[»] chr7 (19 HSPs)
chr7 (8-361)||(31494240-31494588)
chr7 (33-351)||(24939394-24939707)
chr7 (33-331)||(32630724-32631022)
chr7 (33-331)||(36355244-36355541)
chr7 (8-336)||(47031246-47031572)
chr7 (11-323)||(48545588-48545899)
chr7 (33-88)||(32630664-32630719)
chr7 (204-278)||(42678006-42678080)
chr7 (33-152)||(35090045-35090164)
chr7 (8-88)||(151859-151939)
chr7 (8-88)||(27418645-27418725)
chr7 (204-278)||(46037163-46037237)
chr7 (186-276)||(48399868-48399958)
chr7 (8-88)||(47915060-47915140)
chr7 (33-88)||(28342257-28342312)
chr7 (185-276)||(37042379-37042469)
chr7 (33-84)||(40097120-40097171)
chr7 (206-278)||(34115286-34115358)
chr7 (32-84)||(34115480-34115532)
[»] chr2 (20 HSPs)
chr2 (8-353)||(2372970-2373316)
chr2 (33-332)||(38822692-38822993)
chr2 (8-334)||(27090636-27090963)
chr2 (33-331)||(24935898-24936196)
chr2 (33-331)||(25684582-25684880)
chr2 (114-330)||(38536015-38536231)
chr2 (33-151)||(30046148-30046266)
chr2 (33-151)||(30137192-30137310)
chr2 (276-339)||(2485361-2485424)
chr2 (34-104)||(2485627-2485700)
chr2 (33-171)||(24193575-24193713)
chr2 (8-88)||(29940946-29941026)
chr2 (33-271)||(11534861-11535099)
chr2 (33-88)||(43078592-43078647)
chr2 (34-88)||(45546958-45547012)
chr2 (33-84)||(3463588-3463639)
chr2 (33-84)||(34028940-34028991)
chr2 (204-278)||(18176282-18176356)
chr2 (205-278)||(39698419-39698492)
chr2 (204-278)||(15284339-15284415)
[»] chr8 (21 HSPs)
chr8 (8-351)||(24296394-24296735)
chr8 (33-333)||(14723726-14724010)
chr8 (187-335)||(38806686-38806834)
chr8 (35-256)||(23185725-23185946)
chr8 (7-130)||(38806840-38806963)
chr8 (8-216)||(35142043-35142251)
chr8 (8-88)||(1606016-1606096)
chr8 (8-88)||(2112792-2112872)
chr8 (8-88)||(29260279-29260359)
chr8 (204-277)||(39038937-39039010)
chr8 (11-88)||(43605367-43605444)
chr8 (8-88)||(42274973-42275053)
chr8 (8-88)||(9457544-9457624)
chr8 (8-88)||(28619844-28619924)
chr8 (8-88)||(40265284-40265364)
chr8 (33-84)||(4302815-4302866)
chr8 (11-82)||(7148050-7148121)
chr8 (8-81)||(17790437-17790510)
chr8 (8-88)||(41386873-41386954)
chr8 (8-88)||(10802774-10802854)
chr8 (206-278)||(24318115-24318187)
[»] chr6 (12 HSPs)
chr6 (33-331)||(35164830-35165128)
chr6 (204-278)||(7100361-7100435)
chr6 (204-278)||(8794195-8794269)
chr6 (33-88)||(14262668-14262723)
chr6 (33-84)||(31609699-31609750)
chr6 (204-278)||(5957326-5957400)
chr6 (33-171)||(30877878-30878016)
chr6 (34-159)||(10643946-10644071)
chr6 (8-88)||(29834288-29834368)
chr6 (8-88)||(29865722-29865802)
chr6 (204-278)||(709111-709185)
chr6 (8-159)||(6476645-6476796)
[»] chr3 (37 HSPs)
chr3 (33-336)||(6783857-6784159)
chr3 (72-335)||(43151223-43151486)
chr3 (206-353)||(25712245-25712392)
chr3 (8-159)||(25713370-25713522)
chr3 (34-158)||(24574852-24574976)
chr3 (8-158)||(33119571-33119721)
chr3 (10-104)||(4272110-4272204)
chr3 (213-289)||(24574647-24574723)
chr3 (8-152)||(36054946-36055090)
chr3 (286-335)||(24574241-24574290)
chr3 (8-88)||(26555815-26555895)
chr3 (8-88)||(38682427-38682507)
chr3 (33-152)||(30588865-30588984)
chr3 (8-94)||(50900444-50900530)
chr3 (12-88)||(24150835-24150911)
chr3 (8-88)||(38629803-38629883)
chr3 (33-84)||(10105021-10105072)
chr3 (204-278)||(44701739-44701813)
chr3 (33-158)||(27593178-27593303)
chr3 (7-88)||(35730932-35731013)
chr3 (8-88)||(52024202-52024283)
chr3 (8-88)||(19552151-19552231)
chr3 (33-88)||(6035288-6035343)
chr3 (8-87)||(13662549-13662628)
chr3 (33-88)||(26293570-26293625)
chr3 (33-84)||(36785997-36786048)
chr3 (12-171)||(53183993-53184152)
chr3 (34-84)||(10225676-10225726)
chr3 (204-278)||(45215214-45215288)
chr3 (33-82)||(29449102-29449151)
chr3 (33-86)||(38772292-38772345)
chr3 (33-82)||(45215410-45215459)
chr3 (34-82)||(10104902-10104950)
chr3 (34-82)||(10216049-10216097)
chr3 (295-335)||(33119498-33119538)
chr3 (33-88)||(40897058-40897114)
chr3 (8-68)||(45926972-45927032)
[»] chr4 (17 HSPs)
chr4 (33-334)||(5116987-5117288)
chr4 (34-152)||(52109433-52109551)
chr4 (33-158)||(47685170-47685295)
chr4 (8-88)||(8584008-8584088)
chr4 (8-88)||(44929878-44929958)
chr4 (204-278)||(38230969-38231043)
chr4 (33-271)||(54509740-54509975)
chr4 (33-158)||(40143802-40143927)
chr4 (206-278)||(37370700-37370772)
chr4 (8-84)||(41761980-41762056)
chr4 (33-88)||(27767971-27768026)
chr4 (33-84)||(28483898-28483949)
chr4 (33-84)||(44646747-44646798)
chr4 (33-88)||(8880469-8880525)
chr4 (8-88)||(33450140-33450220)
chr4 (8-88)||(42218407-42218487)
chr4 (34-82)||(53594113-53594161)
[»] scaffold0472 (1 HSPs)
scaffold0472 (204-278)||(1698-1772)
[»] scaffold0016 (1 HSPs)
scaffold0016 (8-88)||(81785-81865)
[»] scaffold0237 (1 HSPs)
scaffold0237 (8-88)||(21416-21496)
[»] scaffold0202 (1 HSPs)
scaffold0202 (32-88)||(16547-16603)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 361
Target Start/End: Original strand, 7857026 - 7857379
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagtt 107  Q
    |||||||| ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7857026 ggtgtattagattgagatttagaaggattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataattt 7857125  T
Q  108 cggtggtattgaattaggattttaatgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttgg 207  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||        |||||||||||| ||| |||||||     
T  7857126 tggtggtattgaattaggattttaatgaatttttaaagagtccaacaaaatctggcggtattcaattaaaaaaatttacaacttaaaaattgtctcttga 7857225  T
Q  208 tattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagaca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  7857226 tattcaaaaatgtatagatttcaatggattacttggtagaatggattttgtgagacttttttgttaaaatttttaaaactaacaatctcatacaaagaca 7857325  T
Q  308 tgagatttcttaagactctttttactcctattacatgttctttcattgtttctc 361  Q
    ||||||||||| | |||||||||||||||||||||| |||||||||||||||||    
T  7857326 tgagatttcttgaaactctttttactcctattacatattctttcattgtttctc 7857379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 89 - 361
Target Start/End: Complemental strand, 6902677 - 6902401
Alignment:
Q  89 aaaagattagaaataagttcggtggtattga----attaggattttaatgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnntt 184  Q
    |||||||||||||||| | |||||||||| |    |||||||||||||||| |||||||||||||||||||||||||| |||||||| |         ||    
T  6902677 aaaagattagaaataattccggtggtattcattcaattaggattttaatgattttttaaagagtccaacaaaatctggtggtattcaatcaagatttttt 6902578  T
Q  185 acaacttaaagattatctcttggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaattttaaa 284  Q
    |||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||    
T  6902577 acaacttaaaaattgtctcttggtattcaaaaatgtattgatttcaatggattacttggtagaattgattttgtgagactttttagttaaaaattgtaaa 6902478  T
Q  285 actaacaatctcatacaaagacatgagatttcttaagactctttttactcctattacatgttctttcattgtttctc 361  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||  |||| ||||||||||||||||||||    
T  6902477 actaacaatctcatacaaagatatgagatttcttgagactctttttactctcattatatgttctttcattgtttctc 6902401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 36 - 361
Target Start/End: Original strand, 26876176 - 26876506
Alignment:
Q  36 tttaaaagactttttggttatagaaaaatcttgaggtattcaatcaa-gattttaaaagattagaaataagttcggtggtattgaattaggattttaatg 134  Q
    |||||||| ||||||||||||  ||||| | |||||||||||||||| |||||||||| |||| |||||| | |||||||||| |||||||||||| | |    
T  26876176 tttaaaagtctttttggttattaaaaaagcatgaggtattcaatcaaagattttaaaatattaaaaataactccggtggtattcaattaggattttcagg 26876275  T
Q  135 aatttttaaagagtccaacaaaatctggcggtat----tcagttnnnnnnnnttacaacttaaagattatctcttggtattcaaaaatgtatagatttca 230  Q
    | ||||||||||||  ||||||||| |  |||||    ||| |         | |||||||||| ||| |||||| |||||| |||||  ||| ||||||    
T  26876276 attttttaaagagtttaacaaaatcggatggtatatattcaatcaagatttttcacaacttaaaaattgtctcttagtattctaaaattaatatatttca 26876375  T
Q  231 atggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagacatgagatttcttaagac--tcttt 328  Q
    ||||||||||| ||| ||| ||||||  |||||||||||||| ||||||||||||||||||||||||||||||||   ||||||| |||||||  | |||    
T  26876376 atggattacttagtataatagatttt--gagactttttagtttaaaattttaaaactaacaatctcatacaaagattcgagattttttaagacttttttt 26876473  T
Q  329 ttactcctattacatgttctttcattgtttctc 361  Q
    ||||||||| ||||||| ||||| | |||||||    
T  26876474 ttactcctagtacatgtgctttcgtcgtttctc 26876506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 40410591 - 40410754
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagtt 107  Q
    |||||||||||||||||| |  || |||||||||||||||||| ||| || |||| ||||| ||||||||||||||||||| || || |  |||  | |     
T  40410591 ggtgtattggattgagatttcaatggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaaggaatgtaaaacattc 40410690  T
Q  108 cggtggtattgaattaggattttaatgaatttttaaagagtccaacaaaatctggcggtattca 171  Q
      |||||||| |||||||||||| |||| ||||||| ||||||||  |||||| | ||||||||    
T  40410691 ttgtggtattcaattaggattttcatgattttttaatgagtccaatgaaatctagtggtattca 40410754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 17518431 - 17518580
Alignment:
Q  10 tgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcg 109  Q
    |||||| ||||||||| |  || |||||||||||||||||| ||| || |||| ||||| ||||||||||||||||||| || || |  |||  | |       
T  17518431 tgtattagattgagatttcaatggattttaaaagactttttcgttttaaaaaagtcttgtggtattcaatcaagatttttaaggaatgtaaaacattctt 17518530  T
Q  110 gtggtattgaattaggattttaatgaatttttaaagagtccaacaaaatc 159  Q
    ||| |||| |||||||||||| | || |||||||||||||||| ||||||    
T  17518531 gtgctattcaattaggattttcaagattttttaaagagtccaataaaatc 17518580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 9689394 - 9689339
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||| |||||  ||||| ||||||||||||||||||||||||||||||    
T  9689394 gattttaaaagattttttaattataaaaaaatcttgaggtattcaatcaagatttt 9689339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 10571113 - 10571320
Alignment:
Q  9 gtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttc 108  Q
    ||||||||||||||||| |  || |||||||||| ||||||| ||| || |||| ||||| | ||||||||||| ||||| || || |  |||  | |      
T  10571113 gtgtattggattgagatttcaatggattttaaaaaactttttcgttttataaaagtcttgtgatattcaatcaaaatttttaaggaatgtaaaacattct 10571212  T
Q  109 ggtggtattgaattaggattttaatgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttggt 208  Q
     |||||||| |||||||||||| |  | |||||||||||||||| |||||| || |||||||| ||         ||||||||||| ||| ||| |||||    
T  10571213 tgtggtattcaattaggattttcaaaattttttaaagagtccaataaaatccggtggtattcaattaagattttgtacaacttaaaaattgtctattggt 10571312  T
Q  209 attcaaaa 216  Q
    ||||||||    
T  10571313 attcaaaa 10571320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 27786402 - 27786474
Alignment:
Q  206 ggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaat 278  Q
    |||||||||||||  |||||||| ||||||||  ||  | ||||||||||| |||||||||||||||||||||    
T  27786402 ggtattcaaaaattgatagattttaatggattcttttatggaatggattttgtgagactttttagttaaaaat 27786474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 28594326 - 28594254
Alignment:
Q  206 ggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaat 278  Q
    |||||||||||||  |||||||| ||||||||  ||  || |||||||||| |||||||||||||||||||||    
T  28594326 ggtattcaaaaattgatagattttaatggattcttttatataatggattttgtgagactttttagttaaaaat 28594254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 26795691 - 26795640
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    ||||||||||||||||||  ||||| |||||||||| |||||||||||||||    
T  26795691 gattttaaaagacttttttattataaaaaaatcttgtggtattcaatcaaga 26795640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 2276088 - 2276018
Alignment:
Q  208 tattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaat 278  Q
    ||||||||| | ||||||||| ||||||||  || ||| |||||||||| ||||| |||||||||||||||    
T  2276088 tattcaaaagtctatagattttaatggattcttttgtataatggattttgtgagattttttagttaaaaat 2276018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 1152393 - 1152338
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    ||||||||||||||||||  ||||  |||||||||| |||||| ||||||||||||    
T  1152393 gattttaaaagactttttaattatgaaaaaatcttgtggtatttaatcaagatttt 1152338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 26806755 - 26806704
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    ||||||||||||||||||  ||||| |||||||||| | |||||||||||||    
T  26806755 gattttaaaagacttttttattataaaaaaatcttgtgatattcaatcaaga 26806704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 9689228 - 9689158
Alignment:
Q  208 tattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaat 278  Q
    |||||||||||  |||||||| ||||||||| | | | || || ||||| |||||||||||||||||||||    
T  9689228 tattcaaaaatacatagattttaatggattattggatggagtgaattttgtgagactttttagttaaaaat 9689158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 26806633 - 26806583
Alignment:
Q  34 attttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    ||||||||| |||||||| ||||| |||| ||||| |||||||||||||||    
T  26806633 attttaaaaaactttttgattataaaaaagtcttgtggtattcaatcaaga 26806583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 26795569 - 26795521
Alignment:
Q  34 attttaaaagactttttggttatagaaaaatcttgaggtattcaatcaa 82  Q
    ||||||||| |||||||| ||||| |||| ||||| |||||||||||||    
T  26795569 attttaaaaaactttttgattataaaaaagtcttgtggtattcaatcaa 26795521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 28594501 - 28594445
Alignment:
Q  33 gattttaaaagactttttgg-ttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    ||||||||||||||||||   ||||| |||| ||||| |||||||||||||||||||    
T  28594501 gattttaaaagactttttttattataaaaaagtcttgtggtattcaatcaagatttt 28594445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 359
Target Start/End: Original strand, 9191132 - 9191488
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagtt 107  Q
    |||||||||||||||||| | ||   ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |     
T  9191132 ggtgtattggattgagatttggaaaaattttaaaagactttttggttatagaaaaatcttgagttattcaatcaagattttaaaagattagaaataattc 9191231  T
Q  108 cggtggtattgaattaggattttaatgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttgg 207  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |         |||||||||||| ||| ||||||||    
T  9191232 cggtggtattcaattaggattttaatgattttttaaagagtccaacaaaatctggtggtattcaatcaagatttattacaacttaaaaattgtctcttgg 9191331  T
Q  208 tattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagaca 307  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| || |||||| ||||| ||||| |||||||||||||||    
T  9191332 tattcaaaaatgtattgatttcaatggattacttggtagaatggattttgtgagattttttattttaaaattgtaaaagtaacattctcatacaaagaca 9191431  T
Q  308 tgagatttcttaagactctttttactc-----ctattacatgttctttcattgtttc 359  Q
    ||||||||||| |||||||||||||||      ||||| ||||||||||||||||||    
T  9191432 tgagatttcttgagactctttttactctcgttatattatatgttctttcattgtttc 9191488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 185 - 353
Target Start/End: Complemental strand, 49460055 - 49459886
Alignment:
Q  185 acaacttaaagattatctcttggtattcaaaaat--gtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaatttta 282  Q
    ||||||||||  | ||||||||||||| |||||   |||||||||||||||||||||||| || |||||||||| ||||||||||||||| |||||||||    
T  49460055 acaacttaaaagtcatctcttggtattaaaaaaaacgtatagatttcaatggattacttgatataatggattttgtgagactttttagttgaaaatttta 49459956  T
Q  283 aaactaacaatctcatacaaagacatgagatttcttaagactctttttactcctattacatgttctttcat 353  Q
    |||||| |||||||||| |||||| |||||| | || ||| ||||||||||||  ||| ||||||||||||    
T  49459955 aaactagcaatctcatataaagacctgagatatgttgagattctttttactcc-gttatatgttctttcat 49459886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 271
Target Start/End: Original strand, 36402273 - 36402511
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    |||||||||||||||||| ||| || |||| |||| |||||||||||||||| ||| || || |  |||  | |   |||||||| |||||||||||| |    
T  36402273 gattttaaaagacttttttgttttaaaaaagtctttaggtattcaatcaagacttttaaggaatctaaaacattcttgtggtattcaattaggattttca 36402372  T
Q  133 tgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttggtattcaaaaatgtatagatttcaat 232  Q
     || ||||||| |||||||| ||||||  | |||||||| ||          |||||||||| ||| ||| ||||||||||||| ||||  ||||| |||    
T  36402373 ggattttttaatgagtccaataaaatccagtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaat 36402472  T
Q  233 ggattacttggtag-aatggattttttgagactttttagt 271  Q
    |||||  |||  || |||||||||| ||||||||||||||    
T  36402473 ggatt-gttgtgagtaatggattttgtgagactttttagt 36402511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 26882909 - 26882829
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||||||| |  |  |||||||||||||||||| ||| || |||| ||||| | |||||||||||||||||    
T  26882909 ggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtgttattcaatcaagatttt 26882829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 42657715 - 42657791
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    |||||||||||||||||| |  |  ||||||||||||||||||  ||||| |||| ||||| |||||||||||||||    
T  42657715 ggtgtattggattgagatttcaagagattttaaaagactttttaattataaaaaagtcttgtggtattcaatcaaga 42657791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 45318461 - 45318541
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||||||| |  |  |||||||||||||||||| ||| || |||| ||||  |||||||||||||||||||    
T  45318461 ggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttctggtattcaatcaagatttt 45318541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 48194787 - 48194861
Alignment:
Q  204 ttggtattcaaaaatgtatagatttcaatggattacttgg-tagaatggattttttgagactttttagttaaaaat 278  Q
    ||||||||||||| | |||||||||  ||||||| ||||| | ||||||||||| |||||||||||||||||||||    
T  48194787 ttggtattcaaaagtctatagattttgatggatt-cttggatggaatggattttgtgagactttttagttaaaaat 48194861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 1928462 - 1928336
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    |||||||||||||||||| ||| || |||| |||| |||||||||||||||| ||| || || |  |||  | |   |||||||| |||||||||||| |    
T  1928462 gattttaaaagacttttttgttttaaaaaagtctttaggtattcaatcaagacttttaaggaatctaaaacattcttgtggtattcaattaggattttca 1928363  T
Q  133 tgaatttttaaagagtccaacaaaatc 159  Q
     || ||||||| |||||||| ||||||    
T  1928362 agattttttaatgagtccaataaaatc 1928336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 27198272 - 27198346
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaa 82  Q
    |||||||||||||||||  |  |  ||||||||||||||||||| ||||| |||| ||||| |||||||||||||    
T  27198272 ggtgtattggattgagactttaagggattttaaaagactttttgtttataaaaaagtcttgtggtattcaatcaa 27198346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 27198468 - 27198542
Alignment:
Q  204 ttggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaat 278  Q
    ||||||||||||||| ||||||||| ||||||||  ||  |||| | |||||| |||||||| ||||||||||||    
T  27198468 ttggtattcaaaaatatatagattttaatggattcttttatagagttgattttgtgagacttcttagttaaaaat 27198542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 48203547 - 48203619
Alignment:
Q  206 ggtattcaaaaatgtatagatttcaatggattacttgg-tagaatggattttttgagactttttagttaaaaat 278  Q
    ||||||||||| | |||||||||  ||||||| ||||| | ||||||||||| |||||||||||||||||||||    
T  48203547 ggtattcaaaagtctatagattttgatggatt-cttggatggaatggattttgtgagactttttagttaaaaat 48203619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 19007467 - 19007393
Alignment:
Q  204 ttggtattcaaaaatgtatagatttcaatggattacttgg-tagaatggattttttgagactttttagttaaaaat 278  Q
    |||||||| |||| | |||||||||  ||||||| ||||| | ||||||||||| |||||||||||||||||||||    
T  19007467 ttggtattaaaaagtctatagattttgatggatt-cttggatggaatggattttgtgagactttttagttaaaaat 19007393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 25612066 - 25612117
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    ||||||||||||||||||  ||||  |||||||||| |||||||||||||||    
T  25612066 gattttaaaagactttttaattatgaaaaaatcttgtggtattcaatcaaga 25612117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 38536338 - 38536287
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    ||||||||||||||||||  ||||| |||| ||||| |||||||||||||||    
T  38536338 gattttaaaagactttttatttataaaaaagtcttgtggtattcaatcaaga 38536287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 38558556 - 38558505
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    ||||||||||||||||||  ||||| |||| ||||| |||||||||||||||    
T  38558556 gattttaaaagactttttatttataaaaaagtcttgtggtattcaatcaaga 38558505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 51826894 - 51826843
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    ||||||||||||||||||  | ||| |||||||||| |||||||||||||||    
T  51826894 gattttaaaagactttttaataataaaaaaatcttgtggtattcaatcaaga 51826843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 52705419 - 52705474
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||| ||||| ||| || |||| ||||| |||||||||||||||||||    
T  52705419 gattttaaaagatttttttgttttataaaagtcttgtggtattcaatcaagatttt 52705474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 9831325 - 9831374
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaa 82  Q
    |||||||||||||||||| ||| || |||| |||| ||||||||||||||    
T  9831325 gattttaaaagacttttttgttttaaaaaagtctttaggtattcaatcaa 9831374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 14555202 - 14555126
Alignment:
Q  200 tctcttggtattcaaaaatgtatagatttcaatggattacttgg-tagaatggattttttgagactttttagttaaaa 276  Q
    ||||||||||||||||| | |||||||||  ||| ||| ||||| | ||||||||||| |||||||||||||| ||||    
T  14555202 tctcttggtattcaaaagtctatagattttgatgaatt-cttggattgaatggattttgtgagactttttagtcaaaa 14555126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 42657953 - 42657985
Alignment:
Q  246 gaatggattttttgagactttttagttaaaaat 278  Q
    ||||||||||| |||||||||||||||||||||    
T  42657953 gaatggattttatgagactttttagttaaaaat 42657985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 50192841 - 50192789
Alignment:
Q  34 attttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatt 86  Q
    |||||||||||||||||  ||||  |||| ||||| |||||||||||||||||    
T  50192841 attttaaaagacttttttattatgaaaaagtcttgtggtattcaatcaagatt 50192789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 361
Target Start/End: Original strand, 31494240 - 31494588
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagtt 107  Q
    |||||||||||||| ||| | ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  31494240 ggtgtattggattgggatttggaaggattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataattc 31494339  T
Q  108 cggtggtattgaattaggattttaatgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttgg 207  Q
    | || ||||| ||||||||||||||||| ||||||||||||| |||||||||||| |||||||| |         |||||||||||| ||| ||||||||    
T  31494340 cagttgtattcaattaggattttaatgattttttaaagagtcaaacaaaatctggtggtattcaatcaagattttttacaacttaaaaattgtctcttgg 31494439  T
Q  208 tattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagaca 307  Q
    |||| |||||||||| ||||| ||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| |||    
T  31494440 tattaaaaaatgtattgattttaatggattacttggtagaatggattttgtgaaactttttggttaaaaattttaaaactaacaatctcatacaaaaaca 31494539  T
Q  308 tgagatttcttaagactctttttactcctattacatgttctttcattgtttctc 361  Q
    ||||||||||| |||||||||||||||     | ||||||||||||||||||||    
T  31494540 tgagatttcttgagactctttttactc-----atatgttctttcattgtttctc 31494588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 33 - 351
Target Start/End: Complemental strand, 24939707 - 24939394
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||| |||||| |    
T  24939707 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcatgattttaaaagattag-aataaattcggtggtattcaattatgattttca 24939609  T
Q  133 tgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttggtattcaaaaatgtatagatttcaat 232  Q
    |||||||||||||||||||||||||||||  |||||||| ||        | | |||||||| ||  ||| ||||||||||||||| ||||||||| |||    
T  24939608 tgaatttttaaagagtccaacaaaatctgatggtattcaattaaaatttttcataacttaaaaatagtct-ttggtattcaaaaatttatagattttaat 24939510  T
Q  233 ggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagacatgagatttcttaagactctttttac 332  Q
    | ||| |||  |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||   ||||||    
T  24939509 gaatttcttaatagaatagattttgtgagactttttagttgaaaattttaaaactaacaatctcatgcaaagacatgagatttcttgagac---ttttac 24939413  T
Q  333 tcctattacatgttctttc 351  Q
    ||| |||| || |||||||    
T  24939412 tcccattatattttctttc 24939394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 33 - 331
Target Start/End: Original strand, 32630724 - 32631022
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||| |||||||||||| |    
T  32630724 gattttaaatgactttttgcttataaaaaaatcttgaggtattcaatcaagcttttaaaagattagaaataatttcagtggtattcaattaggattttca 32630823  T
Q  133 tgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttggtattcaaaaatgtatagatttcaat 232  Q
     | | ||||||||||||||||||||||||| ||||||   |         |  ||||||||| ||| ||  |||||| | |||||||||||||||| |||    
T  32630824 ggcacttttaaagagtccaacaaaatctggtggtattatatcaagatttttctcaacttaaaaattgtcctttggtaataaaaaatgtatagattttaat 32630923  T
Q  233 ggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagacatgagatttcttaagactcttttta 331  Q
    ||||| |||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  32630924 ggattccttgatataatggattttgtgagactttttagttaaaaattttaaaactaacaatctcatataaggacctgagatttcttaagactcttttta 32631022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 33 - 331
Target Start/End: Complemental strand, 36355541 - 36355244
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    ||||||||| || |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | | |||||||| ||||| ||||| |     
T  36355541 gattttaaatgattttttggttataaaaaaatcgtgaggtattcaatcaagattttaaaagattagaaataattccagtggtattcaattaagatttcag 36355442  T
Q  133 tgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttggtattcaaaaatgtatagatttcaat 232  Q
     | |||||||| |||||||||||||||||  |||||| | |         |  ||||||||| ||| ||  ||| ||||||||||||||||||||| |||    
T  36355441 -gcatttttaaggagtccaacaaaatctgatggtattaaatcaagatttttctcaacttaaaaattgtcctttgttattcaaaaatgtatagattttaat 36355343  T
Q  233 ggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagacatgagatttcttaagactcttttta 331  Q
    ||||| |||| || |||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  36355342 ggattccttgatataatggattttgtgagactttttagttgaaaattttaaaactaacaatctcatataaagacctgagatttcttaagactcttttta 36355244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 8 - 336
Target Start/End: Original strand, 47031246 - 47031572
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagtt 107  Q
    ||||||||| |||| ||| | ||  |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||| |     
T  47031246 ggtgtattgaattgggattttgaaggattttaaaaaactttttggttatagaaaaatcttgagatattcaatcaagattttaaaaaattataaataattc 47031345  T
Q  108 cggtggtattgaattaggattttaatgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttgg 207  Q
    |||||||||| ||||| |||||| | ||||||||||||||| |||| |||||  | |||||||  |         | |||| ||||| ||| ||||||||    
T  47031346 cggtggtattcaattaagattttcaagaatttttaaagagttcaaccaaatccagtggtattccatcaaaaaatttcacaatttaaaaattgtctcttgg 47031445  T
Q  208 tattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagaca 307  Q
    |||| ||||||||||||||||||||| |||||||  ||||||||||||| | | |||||||| ||| ||||||||||||||||||||||||||||||||     
T  47031446 tatttaaaaatgtatagatttcaatgaattacttaatagaatggattttgtaaaactttttaattataaattttaaaactaacaatctcatacaaagact 47031545  T
Q  308 tgagatttcttaagactctttttactcct 336  Q
     |||||||||| |||  ||||||||||||    
T  47031546 cgagatttcttgaga--ctttttactcct 47031572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 48545899 - 48545588
Alignment:
Q  11 gtattggattgagatctagattgattttaaaagactttttggttatagaaaaa-tcttgaggtattcaatcaagattttaaaagattagaaataagttcg 109  Q
    |||||| |||||||| | ||  |||||||||||| ||||| ||| || ||||| |||||||||||||||||||||||||||| |||||||||||| || |    
T  48545899 gtattgaattgagattttgaaagattttaaaagattttttagttctaaaaaaaatcttgaggtattcaatcaagattttaaaggattagaaataattttg 48545800  T
Q  110 gtggtattgaattaggattttaatgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttggta 209  Q
    || ||||| ||||| ||||||   || ||||||||||||| ||| ||||  || |||||||  |         |  ||||||||| |||  |||||||||    
T  48545799 gtagtattcaattaagatttttcggattttttaaagagtctaactaaattcggtggtattccatcaagatttttcgcaacttaaaaatt--ctcttggta 48545702  T
Q  210 ttcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagacatg 309  Q
    |||||||||||||||||||||||||||| |||  |  |||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||| ||    
T  48545701 ttcaaaaatgtatagatttcaatggattccttattgaaatggattttgtgagactttttagttaaaaatttcaaaactaacaatttcatacaaagacttg 48545602  T
Q  310 agatttcttaagac 323  Q
    ||||||||| ||||    
T  48545601 agatttcttgagac 48545588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 32630664 - 32630719
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||    
T  32630664 gattttaaatgacgttttggttataaaaaaatcttgaggtattcaatcaagatttt 32630719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 42678080 - 42678006
Alignment:
Q  204 ttggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaat 278  Q
    ||||||||||||||| |  |||||| ||||||||  || |||||||||||||| |||||||||||||||||||||    
T  42678080 ttggtattcaaaaatctgcagattttaatggattcttttgtagaatggattttatgagactttttagttaaaaat 42678006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 152
Target Start/End: Complemental strand, 35090164 - 35090045
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    |||||||||||||||||| ||| || |||| ||||| ||||||||||||| ||||| || || || |||  | |   |||||||| |||||||||||| |    
T  35090164 gattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaaaatttttaaggaatataaaacattcttgtggtattcaattaggattttca 35090065  T
Q  133 tgaatttttaaagagtccaa 152  Q
    ||| ||||||| ||||||||    
T  35090064 tgattttttaatgagtccaa 35090045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 151859 - 151939
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||||||| |  |  |||||||||||||||||| ||| || |||| ||||| | |||||||||||||||||    
T  151859 ggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtgatattcaatcaagatttt 151939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 27418725 - 27418645
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||| ||||||||||| |  |  |||||||||||||||||| ||| || |||| ||||| |||||||||||||||||||    
T  27418725 ggtgtactggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttt 27418645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 46037237 - 46037163
Alignment:
Q  204 ttggtattcaaaaatgtatagatttcaatggattacttgg-tagaatggattttttgagactttttagttaaaaat 278  Q
    ||||||||||||| | |||||||||  ||||||| ||||| | ||||||||||| |||||||||||||||||||||    
T  46037237 ttggtattcaaaagtctatagattttgatggatt-cttggatggaatggattttgtgagactttttagttaaaaat 46037163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 276
Target Start/End: Original strand, 48399868 - 48399958
Alignment:
Q  186 caacttaaagattatctcttggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaa 276  Q
    ||||||||| | ||||| |||||| |||||| | || |||||| ||||||||  ||  ||||||||||||| ||||||||| |||||||||    
T  48399868 caacttaaaaaatatctattggtaatcaaaagtatagagattttaatggattcttttctagaatggattttgtgagactttctagttaaaa 48399958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 47915140 - 47915060
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||||||| |     |||||||||||||||||| ||| || |||| ||||| |||||||||| ||||||||    
T  47915140 ggtgtattggattgagatttcataggattttaaaagacttttttgttttataaaagtcttgtggtattcaattaagatttt 47915060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 28342257 - 28342312
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    ||||||||||||||||||  ||||  |||| ||||| |||||||||||||||||||    
T  28342257 gattttaaaagactttttaattatgaaaaagtcttgtggtattcaatcaagatttt 28342312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 276
Target Start/End: Complemental strand, 37042469 - 37042379
Alignment:
Q  185 acaacttaaagattatctcttggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaa 276  Q
    |||||||| | |||||||| ||||||||||||||  |||||||| |||| |||  ||||   |||||||||| ||||| |||||||||||||    
T  37042469 acaacttataaattatctcatggtattcaaaaatacatagatttaaatgaattctttggcgaaatggattttgtgaga-tttttagttaaaa 37042379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 40097120 - 40097171
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    |||||||||||||||||| ||| || |||| |||| ||||||||||||||||    
T  40097120 gattttaaaagacttttttgttttaaaaaagtctttaggtattcaatcaaga 40097171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 34115358 - 34115286
Alignment:
Q  206 ggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaat 278  Q
    ||||||||||||| | ||||||| ||||||||  || ||| | |||||||| |||||||||||| || |||||    
T  34115358 ggtattcaaaaatctgtagattttaatggattcttttgtatagtggattttgtgagactttttaattgaaaat 34115286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 34115532 - 34115480
Alignment:
Q  32 tgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    |||||||||||||||||||  | ||| ||||||||||  ||||||||||||||    
T  34115532 tgattttaaaagactttttaatgataaaaaaatcttgtagtattcaatcaaga 34115480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 163; Significance: 5e-87; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 2372970 - 2373316
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagtt 107  Q
    ||||||||| |||| ||| | ||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2372970 ggtgtattgaattgggatttcgaaggattttaaaagacttttttgttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataattt 2373069  T
Q  108 cggtggtattgaattaggattttaatgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttgg 207  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||  |  |||||| | |         | |||||||||| ||| || ||||     
T  2373070 cggtggtattcaattaggattttcatgaatttttaaagagtccaacaaaattcgttggtatttaatcaagatttttcacaacttaaaaattgtcccttga 2373169  T
Q  208 tattcaaaaa-tgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagac 306  Q
    |||||||||| |  | |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| | ||| |     
T  2373170 tattcaaaaacttaaaagatttcaatggattacttggtagaatggattttctgagactttttagttgaaaattttaaaactaacaatctcacataaatat 2373269  T
Q  307 atgagatttcttaagactctttttactcctattacatgttctttcat 353  Q
     |||||||| || ||||| |||||||||  |||| ||||||||||||    
T  2373270 ctgagattttttgagactttttttactctcattatatgttctttcat 2373316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 33 - 332
Target Start/End: Complemental strand, 38822993 - 38822692
Alignment:
Q  33 gattttaaaagactttt-tggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggatttta 131  Q
    |||| |||||||||||| | |||||| |||||||| |||| |||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||     
T  38822993 gattgtaaaagacttttatagttataaaaaaatctcgaggcattcaatcaagattttaaaagattagaaataattccggtggtattcaattaggattttc 38822894  T
Q  132 atgaattttt-aaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttggtattcaaaaatgtatagatttca 230  Q
    | || ||||| ||||| |||||||||||| || |||||||  |         | |||||||||| ||| |||||||||||| ||||||||||||||||||    
T  38822893 aagatttttttaaagaatccaacaaaatccggtggtattcgatcaagatttttcacaacttaaaaattgtctcttggtattaaaaaatgtatagatttca 38822794  T
Q  231 atggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagacatgagatttcttaagactcttttt 330  Q
    ||||||||||||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38822793 atggattacttggtataatggattttgtgagattttttagttgaaaattttaaaactaacaatctcatacaaagacatgagatttcttgagactcttttt 38822694  T
Q  331 ac 332  Q
    ||    
T  38822693 ac 38822692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 334
Target Start/End: Original strand, 27090636 - 27090963
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagtt 107  Q
    |||||||||||||| ||| |  |  |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |     
T  27090636 ggtgtattggattgggatttccaaagattttaaaagattttttggttatagaaaaatcttgaagtattcaatcaagattttaaaagattagaaataattc 27090735  T
Q  108 cggtggtattgaattaggattttaatgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttgg 207  Q
     ||||||||| ||||||||||||| ||| ||||||||||||||||||||||   | ||||||||  |        | |||||||||| ||| || |||||    
T  27090736 tggtggtattcaattaggattttactgattttttaaagagtccaacaaaattcagtggtattcaactatgatttttaacaacttaaaaattgtcccttgg 27090835  T
Q  208 tatt-caaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagac 306  Q
    ||||  |||||||||||||||| ||| ||||||||| ||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||| |||     
T  27090836 tattaaaaaaatgtatagattttaatagattacttgatagaatggattttgtaagactttttagttgaaaattttaaaactaacaatctcatacagagat 27090935  T
Q  307 atgagatttcttaagactctttttactc 334  Q
     | | ||||||| | |||||||||||||    
T  27090936 ctaaaatttcttgaaactctttttactc 27090963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 33 - 331
Target Start/End: Complemental strand, 24936196 - 24935898
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    ||||||||| ||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| ||  |||||||| ||||| |||||| |    
T  24936196 gattttaaatgactttttggttataaaaaaatcttgagttattcaatcatgattttaaaagattagaaataattttagtggtattcaattaagattttca 24936097  T
Q  133 tgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttggtattcaaaaatgtatagatttcaat 232  Q
     | ||||||||||||||||||||||| ||| |||||| | |         |  ||||||||| ||||||  ||| ||||||||||| ||||||||| |||    
T  24936096 ggcatttttaaagagtccaacaaaatttggtggtattaaatcaagatttttctcaacttaaaaattatcctttgttattcaaaaatatatagattttaat 24935997  T
Q  233 ggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagacatgagatttcttaagactcttttta 331  Q
    ||||| |||  || ||| |||||| ||||||||||||||| |||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  24935996 ggattccttaatataatagattttgtgagactttttagttgaaaattttaaaactaacaatctcatataaggacttgagatttcttaagactcttttta 24935898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 33 - 331
Target Start/End: Complemental strand, 25684880 - 25684582
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    ||||||||| ||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| ||| |||||||| ||||| |||||| |    
T  25684880 gattttaaatgactttttggttataaaaaaatcttgagttattcaatcatgattttaaaagattagaaataatttcagtggtattcaattaagattttca 25684781  T
Q  133 tgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttggtattcaaaaatgtatagatttcaat 232  Q
     | ||||||||||||||||||||||| ||| |||||| | |         |  ||||||||| ||||||  ||| ||||||||||| ||||||||| |||    
T  25684780 ggcatttttaaagagtccaacaaaatttggtggtattaaatcaagatttttctcaacttaaaaattatcctttgttattcaaaaatatatagattttaat 25684681  T
Q  233 ggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagacatgagatttcttaagactcttttta 331  Q
    | ||| |||  || ||| |||||| ||||||||||||||| |||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  25684680 gaattccttaatataatagattttgtgagactttttagttgaaaattttaaaactaacaatctcatataaggacttgagatttcttaagactcttttta 25684582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 114 - 330
Target Start/End: Complemental strand, 38536231 - 38536015
Alignment:
Q  114 tattgaattaggattttaatgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttggtattca 213  Q
    |||| ||| |||||||| |||| |||||||||||||||||||||||||    |||||| |         |  ||||||||| | ||||||||  |||| |    
T  38536231 tattcaataaggatttttatgattttttaaagagtccaacaaaatctgatcatattcaatcaagatttttctcaacttaaaaactatctcttaatattta 38536132  T
Q  214 aaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagacatgagat 313  Q
    ||||| ||||||||| |||||||| |||| || |||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||| || ||||||    
T  38536131 aaaatatatagattttaatggattccttgctacaatgaattttgtgagactttttagttgaaaattttaaaactaacaatctcatacaaacacgtgagat 38536032  T
Q  314 ttcttaagactcttttt 330  Q
    ||||| |||||||||||    
T  38536031 ttcttgagactcttttt 38536015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 30046148 - 30046266
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| ||| |||||||| ||||| |||||| |    
T  30046148 gattttaaatgactttttggttataaaaaaatcttgaggtattcaatcatgattttaaaatattagaaataatttcagtggtattcaattaagattttca 30046247  T
Q  133 tgaatttttaaagagtcca 151  Q
     | ||||||||||||||||    
T  30046248 ggcatttttaaagagtcca 30046266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 30137192 - 30137310
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| ||| |||||||| ||||| |||||| |    
T  30137192 gattttaaatgactttttggttataaaaaaatcttgaggtattcaatcatgattttaaaatattagaaataatttcagtggtattcaattaagattttca 30137291  T
Q  133 tgaatttttaaagagtcca 151  Q
     | ||||||||||||||||    
T  30137292 ggcatttttaaagagtcca 30137310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 2485424 - 2485361
Alignment:
Q  276 aattttaaaactaacaatctcatacaaagacatgagatttcttaagactctttttactcctatt 339  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||    
T  2485424 aattttaaaactaacaatctcatacaaagacctgagatttcttgagactctttttacttctatt 2485361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 2485700 - 2485627
Alignment:
Q  34 attttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatt---ttaaaagattagaaataa 104  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||| |||   ||||||||||||||||||    
T  2485700 attttaaaagattttttggttatagaaaaatcttgagatattcaatcaaaattttattaaaagattagaaataa 2485627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 33 - 171
Target Start/End: Original strand, 24193575 - 24193713
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    |||||||||||||||||| ||| || |||| ||||| ||||||||||||||||||| || || || |||  | ||  |||||||| |||||||||||| |    
T  24193575 gattttaaaagacttttttgttttaaaaaagtcttggggtattcaatcaagatttttaaggaatataaaacatttttgtggtattcaattaggattttca 24193674  T
Q  133 tgaatttttaaagagtccaacaaaatctggcggtattca 171  Q
     || ||||||| |||||||| |||||  || ||||||||    
T  24193675 agattttttaatgagtccaataaaattcggtggtattca 24193713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 29940946 - 29941026
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||||||| |  |  |||||||||||||||||| ||| || |||| ||||| |||||||||||||||||||    
T  29940946 ggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttt 29941026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 271
Target Start/End: Original strand, 11534861 - 11535099
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    |||||||||||||||||| ||| || |||| |||| |||||||||||||||| ||| || || |  |||  | |   |||||||| |||||||||||| |    
T  11534861 gattttaaaagacttttttgttttaaaaaagtctttaggtattcaatcaagacttttaaggaatctaaaacattcttgtggtatttaattaggattttca 11534960  T
Q  133 tgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttggtattcaaaaatgtatagatttcaat 232  Q
     || ||||||| |||||||| ||||||  | || ||||| ||          |||||||||| ||| ||| ||||||||||||| ||||  ||||| |||    
T  11534961 ggattttttaatgagtccaataaaatccagtggaattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaat 11535060  T
Q  233 ggattacttggtag-aatggattttttgagactttttagt 271  Q
    |||||  |||  || |||||||||| ||||||||||||||    
T  11535061 ggatt-gttgtgagtaatggattttgtgagactttttagt 11535099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 43078592 - 43078647
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    ||||||||||||||||||| ||||  |||| ||||| |||||||||||||||||||    
T  43078592 gattttaaaagactttttgattatgaaaaagtcttgtggtattcaatcaagatttt 43078647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 45546958 - 45547012
Alignment:
Q  34 attttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    ||||||||||||||||| ||| || |||| ||||| |||||||||||||||||||    
T  45546958 attttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttt 45547012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 3463588 - 3463639
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    ||||||||||||||||||  ||||  |||||||||| |||||||||||||||    
T  3463588 gattttaaaagactttttaattatgaaaaaatcttgtggtattcaatcaaga 3463639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 34028991 - 34028940
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    |||||||||||||||||| ||| || |||| |||| ||||||||||||||||    
T  34028991 gattttaaaagacttttttgttttaaaaaagtctttaggtattcaatcaaga 34028940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 18176356 - 18176282
Alignment:
Q  204 ttggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaat 278  Q
    ||||||||||||| | |  |||||| ||||||||   | ||||| |||||||| |||||||||||||||||||||    
T  18176356 ttggtattcaaaattcttgagattttaatggattctattgtagagtggattttgtgagactttttagttaaaaat 18176282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 39698492 - 39698419
Alignment:
Q  205 tggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaat 278  Q
    |||||||||||||| || ||||||  |||||||  |||  |  ||||||||| |||||||||||||||||||||    
T  39698492 tggtattcaaaaatataaagatttagatggattctttgaaatgatggattttatgagactttttagttaaaaat 39698419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 15284415 - 15284339
Alignment:
Q  204 ttggtatt-caaaaatgtatagatttcaatggattacttggtagaatggattttttgag-actttttagttaaaaat 278  Q
    |||||||| ||||| | ||||||||| ||||||||  || ||| |||||||||| |||| |||||||||||||||||    
T  15284415 ttggtattacaaaagtttatagattttaatggattcttttgtacaatggattttgtgagtactttttagttaaaaat 15284339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 5e-81; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 24296735 - 24296394
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagtt 107  Q
    ||||||||| |||| ||| | ||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |     
T  24296735 ggtgtattgaattgggatttcgaaagattttaaaagactttttggttatagaaaaatcttgaggtattcaatcatgattttaaaagattataaataaatc 24296636  T
Q  108 cggtggtattgaattaggattttaatgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttgg 207  Q
     |||||||||  | ||||||||| |||| |||||||||||| ||| ||||||||  |||||||| |         | | |||||||| ||  |||||||     
T  24296635 tggtggtattccactaggattttcatgattttttaaagagttcaataaaatctgatggtattcaataaaaaaatttcataacttaaaaatagtctcttga 24296536  T
Q  208 tattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagaca 307  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  24296535 tattcaaaaatgtatagattttaatggattctttggtagaatggattttgtaagactttttagttgaaaattttaaaactaacaatctcatgcaaagaca 24296436  T
Q  308 tgagatttcttaagactctttttactcctattacatgttctttc 351  Q
    ||||||||||| |||  ||||||||| |||||| || |||||||    
T  24296435 tgagatttcttgaga--ctttttacttctattatattttctttc 24296394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 33 - 333
Target Start/End: Complemental strand, 14724010 - 14723726
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||  |  ||||  ||| ||||||||||||||    
T  14724010 gattttaaaagacttttttgttatagaaaaatcttgaagtattcaatcaagattttaaaagattagaaatatttatggtgacattcaattaggattttaa 14723911  T
Q  133 tgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttggtattcaaaaatgtatagatttcaat 232  Q
    | | |||||||||||||||||||||||| | | |                |||||||  ||| ||| |||||||||||| |||||  |||||| ||||||    
T  14723910 ttattttttaaagagtccaacaaaatctcgtgtt----------------ttacaacagaaaaattgtctcttggtattaaaaaaaatatagacttcaat 14723827  T
Q  233 ggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagacatgagatttcttaagactctttttac 332  Q
    |||||||||||||||| ||| ||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||| ||||||||    
T  14723826 ggattacttggtagaagggaatttgtaagactttttagttaaaatttttaaaactaacaatctcatacaaacacatgagatttcttgagaccctttttac 14723727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 187 - 335
Target Start/End: Complemental strand, 38806834 - 38806686
Alignment:
Q  187 aacttaaagattatctcttggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaattttaaaac 286  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||| |||  || ||||||| || |||||| |||||||| |||||||||||||    
T  38806834 aacttaaaaattatctgttggtattcaaaaatgtatagatttcaatggattccttactataatggatattgtgagacattttagttgaaaattttaaaac 38806735  T
Q  287 taacaatctcatacaaagacatgagatttcttaagactctttttactcc 335  Q
    ||||||||||||| |||||| |||||||| || ||| | ||||||||||    
T  38806734 taacaatctcatataaagacttgagattttttgagattttttttactcc 38806686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 35 - 256
Target Start/End: Original strand, 23185725 - 23185946
Alignment:
Q  35 ttttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaatg 134  Q
    ||||||||||||||||  ||||| |||||||| ||||||||||||||||||||||| | ||||||||||| |||| ||||||| |||||||||||| |      
T  23185725 ttttaaaagactttttacttataaaaaaatctcgaggtattcaatcaagattttaatatattagaaataatttcgttggtattcaattaggattttcaaa 23185824  T
Q  135 aatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttggtattcaaaaatgtatagatttcaatgg 234  Q
    || ||||| ||  ||||| ||||||||| |||||||| |         | |||||||||| ||| |||| ||||||| |||||||||||||| ||||| |    
T  23185825 aaattttataggatccaataaaatctggtggtattcaatcaaaatttttcacaacttaaaaattgtctcctggtattaaaaaatgtatagatctcaatag 23185924  T
Q  235 attacttggtagaatggatttt 256  Q
    |||| |||||| |||| |||||    
T  23185925 attagttggtataatgaatttt 23185946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 38806963 - 38806840
Alignment:
Q  7 aggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagt 106  Q
    |||||||||  |||| ||| | ||| ||||||| |||||||||  |||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  38806963 aggtgtattcaattgggattttgatagattttagaagacttttaagttataaaaaaatcttgaggtattcaatcaagattttaacagattagaaataagt 38806864  T
Q  107 tcggtggtattgaattaggatttt 130  Q
      ||||||||| ||| | ||||||    
T  38806863 ctggtggtattcaatcaagatttt 38806840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 35142043 - 35142251
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagtt 107  Q
    |||||||||||||||||| |  || |||||||||||||||||| ||| || |||| ||||| ||||||||||||| ||||| || || |  |||  | ||    
T  35142043 ggtgtattggattgagattttaatggattttaaaagactttttcgttttaaaaaagtcttgtggtattcaatcaaaatttttaaggaatgtaaaacattt 35142142  T
Q  108 cggtggtattgaattaggattttaatgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttgg 207  Q
      |||||||| |||||||||||| | || ||||||| |||||||| |||||| ||  ||||||| ||         ||||||||||| ||| ||| ||||    
T  35142143 ttgtggtattcaattaggattttcaagattttttaatgagtccaataaaatccggtcgtattcaattaagattttgtacaacttaaaaattgtctattgg 35142242  T
Q  208 tattcaaaa 216  Q
    |||||||||    
T  35142243 tattcaaaa 35142251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 1606096 - 1606016
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||||||| |  |  |||||||||||||||||| ||| || |||| ||||| |||||||||||||||||||    
T  1606096 ggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttt 1606016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 2112792 - 2112872
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||||||| |  |  |||||||||||||||||| ||| || |||| ||||| |||||||||||||||||||    
T  2112792 ggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttt 2112872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 29260359 - 29260279
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||||||| |  |  |||||||||||||||||| ||| || |||| ||||| |||||||||||||||||||    
T  29260359 ggtgtattggattgagattttaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttt 29260279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 39039010 - 39038937
Alignment:
Q  204 ttggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaa 277  Q
    ||||||||||||||| |||| |||| ||||||||  || ||| |||| ||||| ||||||||||||||||||||    
T  39039010 ttggtattcaaaaatctataaattttaatggattcttttgtataatgaattttgtgagactttttagttaaaaa 39038937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 43605444 - 43605367
Alignment:
Q  11 gtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    ||||||||||||||| |  |  |||||||||||||||||| ||| || |||| ||||| |||||||||||||||||||    
T  43605444 gtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttt 43605367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 42274973 - 42275053
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||||||| |  |  |||||||||||| ||||| ||| || |||| ||||| |||||||||||||||||||    
T  42274973 ggtgtattggattgagatttcaaaggattttaaaagatttttttgttttataaaagtcttgtggtattcaatcaagatttt 42275053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 9457544 - 9457624
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||| ||||||||| |  |  ||||||||||||| |||| ||| || |||| ||||| |||||||||||||||||||    
T  9457544 ggtgtattcgattgagatttcaaaggattttaaaagacatttttgttttataaaagtcttgtggtattcaatcaagatttt 9457624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 28619844 - 28619924
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||||||| |  |  |||||||||||||||||| ||| || |||| | ||| |||||||||| ||||||||    
T  28619844 ggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagttttgtggtattcaattaagatttt 28619924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 40265364 - 40265284
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    ||||||||||||||| || |  |  |||||||||||||||||| ||| || |||| ||||| | |||||||||||||||||    
T  40265364 ggtgtattggattgaaatttcaaaggattttaaaagacttttttgttttataaaagtcttgtgatattcaatcaagatttt 40265284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 4302866 - 4302815
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    |||||||||||||||||| ||| || |||| |||| ||||||||||||||||    
T  4302866 gattttaaaagacttttttgttttaaaaaagtctttaggtattcaatcaaga 4302815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 7148050 - 7148121
Alignment:
Q  11 gtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaa 82  Q
    ||||||||||||||| |  |  |||||||||||||||||| ||| || |||| ||||| |||||||||||||    
T  7148050 gtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaa 7148121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 17790437 - 17790510
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatca 81  Q
    |||||||||||||||||| |  |  ||||||||||||||||||| | |||  ||||| ||| ||||||||||||    
T  17790437 ggtgtattggattgagatttcaagagattttaaaagactttttgatgataataaaattttgtggtattcaatca 17790510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 41386954 - 41386873
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttg-gttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||||||| |  |  |||||||||||| |||||  ||| || |||| ||||| |||||||||||||||||||    
T  41386954 ggtgtattggattgagatttcaaaagattttaaaagattttttttgttttataaaagtcttgtggtattcaatcaagatttt 41386873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 10802854 - 10802774
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    ||||||||| |||||||| |  | | |||||||||||||||||  || || |||| ||||  |||||||||||||||||||    
T  10802854 ggtgtattgaattgagatttcaaataattttaaaagacttttttattttataaaagtcttctggtattcaatcaagatttt 10802774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 24318115 - 24318187
Alignment:
Q  206 ggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaat 278  Q
    |||||||||||||  ||||||||  |||||||  ||  | ||||||||||| ||||||||||| |||||||||    
T  24318115 ggtattcaaaaattgatagattttgatggattcttttatggaatggattttgtgagactttttggttaaaaat 24318187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 33 - 331
Target Start/End: Original strand, 35164830 - 35165128
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    ||||||||| ||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| ||| |||||||| ||||| |||||| |    
T  35164830 gattttaaatgactttttggttataaaaaaatcttgagttattcaatcatgattttaaaagattagaaataatttcagtggtattcaattaagattttca 35164929  T
Q  133 tgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttggtattcaaaaatgtatagatttcaat 232  Q
     | ||||||||||||||||||||||| ||| |||||| | |         |  ||||||||| ||||||  ||| ||||||||||| ||||||||| |||    
T  35164930 ggcatttttaaagagtccaacaaaatttggtggtattaaatcaagatttttctcaacttaaaaattatcctttgttattcaaaaatatatagattttaat 35165029  T
Q  233 ggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagacatgagatttcttaagactcttttta 331  Q
    | ||| |||  || ||| |||||| ||||||||||||||| |||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  35165030 gaattccttaatataatagattttgtgagactttttagttgaaaattttaaaactaacaatctcatataaggacttgagatttcttaagactcttttta 35165128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 7100361 - 7100435
Alignment:
Q  204 ttggtattcaaaaatgtatagatttcaatggattacttgg-tagaatggattttttgagactttttagttaaaaat 278  Q
    ||||||||||||| | |||||||||  ||||||| ||||| | ||||||||||| |||||||||||||||||||||    
T  7100361 ttggtattcaaaagtctatagattttgatggatt-cttggatggaatggattttgtgagactttttagttaaaaat 7100435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 8794269 - 8794195
Alignment:
Q  204 ttggtattcaaaaatgtatagatttcaatggattacttgg-tagaatggattttttgagactttttagttaaaaat 278  Q
    ||||||||||||| | |||||||||  ||||||| ||||| | ||||||||||| |||||||||||||||||||||    
T  8794269 ttggtattcaaaagtctatagattttgatggatt-cttggatggaatggattttgtgagactttttagttaaaaat 8794195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 14262723 - 14262668
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    ||||||||||||||||||  ||||  |||||||||| |||||||||||||||||||    
T  14262723 gattttaaaagactttttaattatgaaaaaatcttgtggtattcaatcaagatttt 14262668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 31609750 - 31609699
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    ||||||||||||||||||  ||||| |||||||||| |||||||||||||||    
T  31609750 gattttaaaagactttttaattataaaaaaatcttgtggtattcaatcaaga 31609699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 5957326 - 5957400
Alignment:
Q  204 ttggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaat 278  Q
    ||||||||||||| | ||||||||| |||  |||  || ||| |||||||||| |||||||||||||||||||||    
T  5957326 ttggtattcaaaagtctatagattttaatatattttttcgtataatggattttgtgagactttttagttaaaaat 5957400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 171
Target Start/End: Original strand, 30877878 - 30878016
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    |||||||||||||||||| ||| || |||| |||| |||||||||||||||| ||| || || |  |||  | |   ||| |||| |||||||||||| |    
T  30877878 gattttaaaagacttttttgttttaaaaaagtctttaggtattcaatcaagacttttaaggaatctaaaatattcttgtgatattcaattaggattttca 30877977  T
Q  133 tgaatttttaaagagtccaacaaaatctggcggtattca 171  Q
     || ||||||| |||||||| ||||||| | ||||||||    
T  30877978 agattttttaatgagtccaataaaatctagtggtattca 30878016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 10644071 - 10643946
Alignment:
Q  34 attttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaat 133  Q
    ||||||||||||||||| ||| || |||| |||| |||||||||||||||| ||| || || |  |||  | |   |||||||| |||||||||||| |     
T  10644071 attttaaaagacttttttgttttaaaaaagtctttaggtattcaatcaagacttttaaggaatctaaaacattcttgtggtattcaattaggattttcag 10643972  T
Q  134 gaatttttaaagagtccaacaaaatc 159  Q
    || ||||||| |||||||| ||||||    
T  10643971 gattttttaatgagtccaataaaatc 10643946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 29834368 - 29834288
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||| ||||||||| |  |  ||||||||||||| |||| ||| || |||| ||||| |||||||||||||||||||    
T  29834368 ggtgtattcgattgagatttcaaaggattttaaaagacatttttgttttataaaagtcttgtggtattcaatcaagatttt 29834288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 29865802 - 29865722
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||| ||||||||| |  |  ||||||||||||| |||| ||| || |||| ||||| |||||||||||||||||||    
T  29865802 ggtgtattcgattgagatttcaaaggattttaaaagacatttttgttttataaaagtcttgtggtattcaatcaagatttt 29865722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 709111 - 709185
Alignment:
Q  204 ttggtattcaaaaatgtatagatttcaatggattacttggtag-aatggattttttgagactttttagttaaaaat 278  Q
    ||||||||||||| | |||||||||  ||||||| |||||  | |||||||||| |||||||||||||||||||||    
T  709111 ttggtattcaaaagtctatagattttgatggatt-cttggatgtaatggattttgtgagactttttagttaaaaat 709185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 6476796 - 6476645
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagtt 107  Q
    ||||||||||||||| || |  || |||||||||||||| ||| ||| || |||| |||||  ||||||||| |||||||| ||  | |  |||  | ||    
T  6476796 ggtgtattggattgaaatttcaatggattttaaaagactgttttgttttataaaagtcttgcagtattcaattaagatttttaagaaatgtaaaacattt 6476697  T
Q  108 cggtggtattgaattaggattttaatgaatttttaaagagtccaacaaaatc 159  Q
      |||||||| |||||||||||| | || ||||||| |||||||| ||||||    
T  6476696 ttgtggtattcaattaggattttcaagattttttaatgagtccaataaaatc 6476645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 33 - 336
Target Start/End: Complemental strand, 6784159 - 6783857
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    ||||||| |||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||| |  ||||||||| ||||| |||||| |    
T  6784159 gattttataagactttttagttatacaaaaatcttgagatattcaatcaagattttaaaagattagaaataattctggtggtattaaattaagattttca 6784060  T
Q  133 tgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttggtattcaaaaatgtatagatttcaat 232  Q
     || ||||||||||||||||| ||||  || |||||||  |           |||||||||| ||| ||||||| |||||||||||||||||||||||||    
T  6784059 ggattttttaaagagtccaaccaaattcggtggtattccatcaagattttccacaacttaaaaattgtctcttgatattcaaaaatgtatagatttcaat 6783960  T
Q  233 ggat-tacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagacatgagatttcttaagactcttttta 331  Q
    |||| |||||  ||||||||||||| ||| ||||||||||| |||| || |||| ||||||||||||||||||| ||||||||||||||||  |||||||    
T  6783959 ggatatacttaatagaatggattttgtgaaactttttagttgaaaaattcaaaattaacaatctcatacaaagatatgagatttcttaaga--cttttta 6783862  T
Q  332 ctcct 336  Q
    |||||    
T  6783861 ctcct 6783857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 72 - 335
Target Start/End: Original strand, 43151223 - 43151486
Alignment:
Q  72 tattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaatgaatttttaaagagtccaacaaaatctggcggtattca 171  Q
    ||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| |  ||||||||||||||| |  ||| |  || ||||||||    
T  43151223 tattcaatcaagattttaaaagattagaaataattccggtggtattcaattaggattttcaaaaatttttaaagagtctactaaatttcggtggtattca 43151322  T
Q  172 gttnnnnnnnnttacaacttaaagattatctcttggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagt 271  Q
     |          ||||||||||| ||| ||  |||||||| |||||| ||||||||| ||||||||||||||| | ||| ||||| ||||||||||||||    
T  43151323 atcaaaaatttatacaacttaaaaattgtcctttggtatttaaaaatatatagattttaatggattacttggtgggatgaattttgtgagactttttagt 43151422  T
Q  272 taaaaattttaaaactaacaatctcatacaaagacatgagatttcttaagactctttttactcc 335  Q
    | ||||||||||||||||||||||  ||||||||||||||||||| | ||||||||||||||||    
T  43151423 tgaaaattttaaaactaacaatcttgtacaaagacatgagatttcatgagactctttttactcc 43151486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 206 - 353
Target Start/End: Complemental strand, 25712392 - 25712245
Alignment:
Q  206 ggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaaga 305  Q
    ||||||||||||  || |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| |    
T  25712392 ggtattcaaaaacttaaagatttcaatggattacttggtagaatggattttgtgagactttttagttgaaaattttaaaactaacaatctcacacaaata 25712293  T
Q  306 catgagatttcttaagactctttttactcctattacatgttctttcat 353  Q
    | ||| ||||| ||||||| |||||||||  |||| ||||||||||||    
T  25712292 cctgatatttcgtaagactttttttactctcattatatgttctttcat 25712245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 25713522 - 25713370
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagtt 107  Q
    ||||||||| |||| ||| | ||  |||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |     
T  25713522 ggtgtattgaattgggatttcgaaggattttaaaagagtttttagttatagaaaaatcttgaggtattccatcaagattttaaaagattagaaataaatc 25713423  T
Q  108 cggtggtattgaattaggattttaatga-atttttaaagagtccaacaaaatc 159  Q
    |||||||||| |||||||||||| ||||  |||||||||| ||||||||||||    
T  25713422 cggtggtattcaattaggattttcatgatttttttaaagaatccaacaaaatc 25713370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 24574976 - 24574852
Alignment:
Q  34 attttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaat 133  Q
    ||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| |     
T  24574976 attttaaaagactttttagttataaaaaaatcttgagatattcaatcaagattttaaaagattagaaataattccggtggtattcaattaggattttcaa 24574877  T
Q  134 gaatttttaaagagtccaacaaaat 158  Q
     | |||||||||| |||||||||||    
T  24574876 aattttttaaagaatccaacaaaat 24574852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 33119721 - 33119571
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagtt 107  Q
    ||||||||| |||| ||| | ||  ||||||||||||  |||| |||||| |||||| | ||||||||||||||||||||||||||||||||||||| ||    
T  33119721 ggtgtattgaattgggatattgaaggattttaaaagatattttagttataaaaaaatttcgaggtattcaatcaagattttaaaagattagaaataattt 33119622  T
Q  108 cggtggtattgaattaggattttaatgaatttttaaagagtccaacaaaat 158  Q
    |||||||||| |||||||||||| | || |||||||||| ||||| |||||    
T  33119621 cggtggtattcaattaggattttcaagattttttaaagaatccaataaaat 33119571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 4272110 - 4272204
Alignment:
Q  10 tgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataa 104  Q
    |||||||||||| ||| | ||  |||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  4272110 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatttttaaagattagaaataa 4272204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 24574723 - 24574647
Alignment:
Q  213 aaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaa 289  Q
    |||||||||||||||||||||||||||||| || |||||||||| ||||||||||||| | ||||||||||||||||    
T  24574723 aaaaatgtatagatttcaatggattacttgctataatggattttgtgagactttttaggtgaaaattttaaaactaa 24574647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 36055090 - 36054946
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagtt 107  Q
    |||||||||||||||||| |  |  |||||||||||||||||| ||| || |||| ||||| ||||||||||||||||||| || || |  |||  | ||    
T  36055090 ggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaaggaatgtaaaacattt 36054991  T
Q  108 cggtggtattgaattaggattttaatgaatttttaaagagtccaa 152  Q
      |||||||| |||||||||||| | || ||||||| ||||||||    
T  36054990 ttgtggtattcaattaggattttcaagattttttaatgagtccaa 36054946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 24574290 - 24574241
Alignment:
Q  286 ctaacaatctcatacaaagacatgagatttcttaagactctttttactcc 335  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  24574290 ctaacaatctcatacaaagacctgagatttcttgagactctttttactcc 24574241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 26555815 - 26555895
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||||||| |  |  |||||||||||||||||| ||| || |||| ||||| |||||||||||||||||||    
T  26555815 ggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttt 26555895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 38682427 - 38682507
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    ||||||||| |||||||| |  |  |||||||||||||||||| ||| || |||||||||| |||||||||||||||||||    
T  38682427 ggtgtattgtattgagatttcaaaggattttaaaagacttttttgttttaaaaaaatcttgtggtattcaatcaagatttt 38682507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 152
Target Start/End: Original strand, 30588865 - 30588984
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    |||||||||||||||||| ||| || |||| ||||| ||||||||||||||||||| ||||| |  |||  | |   |||||||| |||||||||||| |    
T  30588865 gattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaaagaatgtaaaacattcttgtggtattcaattaggattttca 30588964  T
Q  133 tgaatttttaaagagtccaa 152  Q
     || ||||||| ||||||||    
T  30588965 agattttttaatgagtccaa 30588984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 50900530 - 50900444
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaaga 94  Q
    ||||||||||||| |||| |  |  |||||||||||||||||| ||| || |||| ||||| ||||||||||||||||||| |||||    
T  50900530 ggtgtattggattaagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaaaga 50900444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 24150911 - 24150835
Alignment:
Q  12 tattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||| |  |  |||||||||||| ||||| ||| || |||||||||| |||||||||||||||||||    
T  24150911 tattggattgagatttcaaaggattttaaaagatttttttgttttataaaaatcttgtggtattcaatcaagatttt 24150835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 38629883 - 38629803
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    ||||||||||||| |||| |  | | ||||||||||||||||| ||| || |||| ||||| |||||||||||||||||||    
T  38629883 ggtgtattggattaagatttcaaataattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttt 38629803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 10105072 - 10105021
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    ||||||||||||||||||  ||||| |||||||||| |||||||||||||||    
T  10105072 gattttaaaagacttttttattataaaaaaatcttgtggtattcaatcaaga 10105021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 44701739 - 44701813
Alignment:
Q  204 ttggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaat 278  Q
    ||||||||||||| | |||||||||  |||||||  | | | ||||||||||| |||||||||||||||||||||    
T  44701739 ttggtattcaaaagtctatagattttgatggattcatggatggaatggattttatgagactttttagttaaaaat 44701813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 158
Target Start/End: Original strand, 27593178 - 27593303
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    |||||||||||| ||||| ||| || |||| |||| |||||||||||||||| ||| || || |  |||  | |   |||||||| |||||||||||| |    
T  27593178 gattttaaaagatttttttgttttaaaaaagtctttaggtattcaatcaagacttttaaggaatctaaaacattcttgtggtattcaattaggattttca 27593277  T
Q  133 tgaatttttaaagagtccaacaaaat 158  Q
    ||| ||||||| |||||||| |||||    
T  27593278 tgattttttaatgagtccaataaaat 27593303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 35730932 - 35731013
Alignment:
Q  7 aggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    ||||||||||||||||||| |  |  |||||||||||| ||||| ||| || |||| ||||| | |||||||||||||||||    
T  35730932 aggtgtattggattgagatttcaaaggattttaaaagatttttttgttttataaaagtcttgtgatattcaatcaagatttt 35731013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 52024283 - 52024202
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaa-tcttgaggtattcaatcaagatttt 88  Q
    |||| ||||||||||||| |  |  |||||||||||||||||| ||| || ||||| ||||| |||||||||||||||||||    
T  52024283 ggtgcattggattgagatttcaaaggattttaaaagacttttttgttttaaaaaaagtcttgtggtattcaatcaagatttt 52024202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 19552231 - 19552151
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||||||| |  |  |||||||||||| |||||  || || |||| ||||| |||||||||||||||||||    
T  19552231 ggtgtattggattgagattttaaaggattttaaaagatttttttattttataaaagtcttgtggtattcaatcaagatttt 19552151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 6035343 - 6035288
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    ||||||||||||||||||  ||||  |||||||||| |||||||||||||| ||||    
T  6035343 gattttaaaagactttttaattatgaaaaaatcttgtggtattcaatcaagttttt 6035288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 13662549 - 13662628
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattt 87  Q
    |||||||||||||||||| |  |   ||||||||||||||||| ||| || |||| ||| | ||||||||||||||||||    
T  13662549 ggtgtattggattgagatttcaaagaattttaaaagacttttttgttttacaaaagtctcgtggtattcaatcaagattt 13662628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 26293625 - 26293570
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||||||| ||| || |||| | ||| |||||||||||||||||||    
T  26293625 gattttaaaagacttttttgttttataaaagttttgtggtattcaatcaagatttt 26293570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 36785997 - 36786048
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    |||||||||||||||||| ||| || |||| |||| ||||||||||||||||    
T  36785997 gattttaaaagacttttttgttttaaaaaagtctttaggtattcaatcaaga 36786048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 53184152 - 53183993
Alignment:
Q  12 tattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggt 111  Q
    ||||| |||||||| |  || |||||||||||| ||||| ||| || |||| ||| | ||||||||||||||||||| || ||    |||  | |   ||    
T  53184152 tattgaattgagatttcaatggattttaaaagatttttttgttttaaaaaagtctcgtggtattcaatcaagatttttaaggaaggtaaaacattcttgt 53184053  T
Q  112 ggtattgaattaggattttaatgaatttttaaagagtccaacaaaatctggcggtattca 171  Q
    | |||| |||||||||||| | || ||||||| |||||||| ||||||||| ||||||||    
T  53184052 gctattcaattaggattttcaagattttttaatgagtccaataaaatctggtggtattca 53183993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 10225726 - 10225676
Alignment:
Q  34 attttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    ||||||||| |||||||| ||||| |||| ||||| |||||||||||||||    
T  10225726 attttaaaaaactttttgattataaaaaagtcttgtggtattcaatcaaga 10225676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 45215288 - 45215214
Alignment:
Q  204 ttggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaat 278  Q
    ||||||||||||||| |  |||||| ||| ||||   | ||||| |||||||| |||||||||||||||||||||    
T  45215288 ttggtattcaaaaatcttgagattttaatagattcaattgtagagtggattttgtgagactttttagttaaaaat 45215214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 29449151 - 29449102
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaa 82  Q
    ||||||||||||||||||  ||||  |||||||||| |||||||||||||    
T  29449151 gattttaaaagacttttttattatgaaaaaatcttgtggtattcaatcaa 29449102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 38772292 - 38772345
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatt 86  Q
    ||||||||||||||||||  ||||  |||| ||||| |||||||||||||||||    
T  38772292 gattttaaaagactttttatttatgaaaaagtcttgtggtattcaatcaagatt 38772345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 45215459 - 45215410
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaa 82  Q
    ||||||||||||||||||  | ||| |||||||||| |||||||||||||    
T  45215459 gattttaaaagactttttaataataaaaaaatcttgtggtattcaatcaa 45215410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 10104950 - 10104902
Alignment:
Q  34 attttaaaagactttttggttatagaaaaatcttgaggtattcaatcaa 82  Q
    ||||||||| |||||||| ||||| |||| ||||| |||||||||||||    
T  10104950 attttaaaaaactttttgattataaaaaagtcttgtggtattcaatcaa 10104902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 10216097 - 10216049
Alignment:
Q  34 attttaaaagactttttggttatagaaaaatcttgaggtattcaatcaa 82  Q
    ||||||||| |||||||| ||||| |||| ||||| |||||||||||||    
T  10216097 attttaaaaaactttttgattataaaaaagtcttgtggtattcaatcaa 10216049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 33119538 - 33119498
Alignment:
Q  295 tcatacaaagacatgagatttcttaagactctttttactcc 335  Q
    |||||||||||  ||||||||||| ||||||||||||||||    
T  33119538 tcatacaaagaattgagatttcttgagactctttttactcc 33119498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 40897058 - 40897114
Alignment:
Q  33 gattttaaaagactttttggttat-agaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||| |||||||  |||| | |||||||||| |||||||||||||||||||    
T  40897058 gattttaaaacactttttaattatgaaaaaaatcttgtggtattcaatcaagatttt 40897114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 45927032 - 45926972
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttg 68  Q
    |||||||||||||||||| |  |  ||||||||||||||||||| ||||| |||| |||||    
T  45927032 ggtgtattggattgagattttaaaggattttaaaagactttttgattataaaaaagtcttg 45926972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 33 - 334
Target Start/End: Original strand, 5116987 - 5117288
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    ||||||||||||| ||||  ||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |   |||||||| ||||| |||||| |    
T  5116987 gattttaaaagaccttttaattataaaaaaatcttaaggtattcaatcaagattttaagagattagaaataattcaagtggtattcaattaagattttca 5117086  T
Q  133 tgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttggtattcaaaa-atgtatagatttcaa 231  Q
     || |||||||||||| |||  ||||| || |||||||  |         |  ||||||||| ||| |||||| ||||| |||| |||||||||||||||    
T  5117087 ggactttttaaagagttcaatgaaatccggtggtattccatcaagatttttcgcaacttaaaaattgtctcttagtattaaaaaaatgtatagatttcaa 5117186  T
Q  232 tggattacttggtagaatggattttttgagactttttagttaaaaattttaaaactaacaatctcatacaaagacatgagatttcttaagactcttttta 331  Q
    |||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| ||||||    
T  5117187 tggattccttagtagaatggattttgtgagactttttagttaaaaattttaaaactaacaatctcatacaaagacttaagatttcttgagact-ttttta 5117285  T
Q  332 ctc 334  Q
    |||    
T  5117286 ctc 5117288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 52109433 - 52109551
Alignment:
Q  34 attttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaat 133  Q
    ||||||||||||||||| ||| || |||||||||| ||||||||||||||||||| || || |  |||  | |   |||||||| |||||||||||| ||    
T  52109433 attttaaaagacttttttgttttataaaaatcttgtggtattcaatcaagatttttaaggaatgtaaaacattcttgtggtattcaattaggattttcat 52109532  T
Q  134 gaatttttaaagagtccaa 152  Q
    || ||||||| ||||||||    
T  52109533 gattttttaatgagtccaa 52109551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 33 - 158
Target Start/End: Original strand, 47685170 - 47685295
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    |||||||||||||||||| ||| || ||||||||| |||||||||||||||| ||| || || |  |||  | ||  |||||||| |||||||||||| |    
T  47685170 gattttaaaagacttttttgttttaaaaaaatctttaggtattcaatcaagacttttaaggaatctaaaacatttttgtggtattcaattaggattttca 47685269  T
Q  133 tgaatttttaaagagtccaacaaaat 158  Q
     || ||||||| |||||||| |||||    
T  47685270 agattttttaatgagtccaataaaat 47685295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 8584088 - 8584008
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||||||| |  |  ||||||||||||||||||  || || |||| ||||| |||||||||||||||||||    
T  8584088 ggtgtattggattgagatttcaaaggattttaaaagacttttttattttataaaagtcttgtggtattcaatcaagatttt 8584008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 44929878 - 44929958
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||||||| |  |  |||||||||| ||||||| ||| || |||| ||||| |||||||||||||||||||    
T  44929878 ggtgtattggattgagattttaaaagattttaaaatacttttttgttttataaaagtcttgtggtattcaatcaagatttt 44929958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 38230969 - 38231043
Alignment:
Q  204 ttggtattcaaaaatgtatagatttcaatggattacttgg-tagaatggattttttgagactttttagttaaaaat 278  Q
    ||||||||||||| | |||||||||  ||||||| ||||| | ||||||||||| |||||||||||||||||||||    
T  38230969 ttggtattcaaaagtctatagattttgatggatt-cttggatggaatggattttgtgagactttttagttaaaaat 38231043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 271
Target Start/End: Original strand, 54509740 - 54509975
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    |||||||||||||||||| ||| || |||| |||| |||||||||||||||| ||| || || |  |||  | |   ||| |||| |||||||||||| |    
T  54509740 gattttaaaagacttttttgttttaaaaaagtctttaggtattcaatcaagacttttaaggaatctaaaatattcttgtgatattcaattaggattttca 54509839  T
Q  133 tgaatttttaaagagtccaacaaaatctggcggtattcagttnnnnnnnnttacaacttaaagattatctcttggtattcaaaaatgtatagatttcaat 232  Q
    | | ||||||| |||||||| ||||||  | |||||||| ||          |||||||||| ||| ||| ||||||||||||| ||||  ||||| |||    
T  54509840 taattttttaatgagtccaataaaatccagtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaat 54509939  T
Q  233 ggattacttggta-gaatggattttttgagactttttagt 271  Q
    |||    ||| || ||||||||||| ||||||||||||||    
T  54509940 gga----ttgttatgaatggattttgtgagactttttagt 54509975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 158
Target Start/End: Original strand, 40143802 - 40143927
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataagttcggtggtattgaattaggattttaa 132  Q
    |||||||||||||||||| ||| || |||| |||| |||||||||||||||| ||| || || |  |||  | |   |||||||| |||||||||||| |    
T  40143802 gattttaaaagacttttttgttttaaaaaagtctttaggtattcaatcaagacttttaaggaatctaaaacattcttgtggtattcaattaggattttca 40143901  T
Q  133 tgaatttttaaagagtccaacaaaat 158  Q
    ||| |||||||  ||||||| |||||    
T  40143902 tgattttttaataagtccaataaaat 40143927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 37370772 - 37370700
Alignment:
Q  206 ggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaat 278  Q
    |||||||||||||  |||||||| ||||||||  ||  | ||||||||||| ||||||||| |||||||||||    
T  37370772 ggtattcaaaaattgatagattttaatggattcttttatggaatggattttgtgagactttatagttaaaaat 37370700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 41761980 - 41762056
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    |||||||||||||||||| |  |  |||||||||||||||| || ||||| |||| ||||| |||||| ||||||||    
T  41761980 ggtgtattggattgagattttaaaggattttaaaagactttgtgattataaaaaagtcttgtggtattgaatcaaga 41762056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 27767971 - 27768026
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    ||||||||||||||||||  ||||  |||| ||||| |||||||||||||||||||    
T  27767971 gattttaaaagactttttaattatgaaaaagtcttgtggtattcaatcaagatttt 27768026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 28483898 - 28483949
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    ||||||||||||||||||  ||||  |||| |||||||||||||||||||||    
T  28483898 gattttaaaagactttttaattatgaaaaagtcttgaggtattcaatcaaga 28483949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 44646747 - 44646798
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaaga 84  Q
    ||||||||||||||||||  | ||| |||||||||| |||||||||||||||    
T  44646747 gattttaaaagactttttaatgataaaaaaatcttgtggtattcaatcaaga 44646798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 8880469 - 8880525
Alignment:
Q  33 gattttaaaagactttttggttatagaaaaatcttgaggtatt-caatcaagatttt 88  Q
    |||||||||||||||||| ||| || |||||||||| |||||| |||| ||||||||    
T  8880469 gattttaaaagacttttttgttttataaaaatcttgtggtattccaattaagatttt 8880525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 33450220 - 33450140
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||||||| |  || |||||||||||||||||| ||| || |||| || ||  ||||||||| | ||||||    
T  33450220 ggtgtattggattgagatttcaatggattttaaaagactttttcgttttaaaaaagtcgtgtagtattcaattaggatttt 33450140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 42218487 - 42218407
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||||||| |  |  |||||||||| ||||||| ||| || |||| ||||| |||||||||| | ||||||    
T  42218487 ggtgtattggattgagatttcaaaggattttaaaaaacttttttgttttataaaagtcttgtggtattcaattaggatttt 42218407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 53594113 - 53594161
Alignment:
Q  34 attttaaaagactttttggttatagaaaaatcttgaggtattcaatcaa 82  Q
    |||||||||||||||||  |||||||||| ||||| || ||||||||||    
T  53594113 attttaaaagacttttttattatagaaaagtcttgtggcattcaatcaa 53594161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 1772 - 1698
Alignment:
Q  204 ttggtattcaaaaatgtatagatttcaatggattacttggtagaatggattttttgagactttttagttaaaaat 278  Q
    ||||||||||||||| |  |||||| ||||||||  || |||||||||||||| |||||||||||||||||||||    
T  1772 ttggtattcaaaaatctgcagattttaatggattcttttgtagaatggattttgtgagactttttagttaaaaat 1698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 81865 - 81785
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||||||||||||| |  |  |||||||||||||||||| ||| || |||| ||||| |||||||||||||||||||    
T  81865 ggtgtattggattgagattttaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttt 81785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 21496 - 21416
Alignment:
Q  8 ggtgtattggattgagatctagattgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    |||||||| ||||||||| |  |  ||||||||||||| |||| ||| || |||| ||||| |||||||||||||||||||    
T  21496 ggtgtattcgattgagatttcaaaggattttaaaagacatttttgttttataaaagtcttgtggtattcaatcaagatttt 21416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 16603 - 16547
Alignment:
Q  32 tgattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagatttt 88  Q
    ||||||| ||||||||||| ||| || |||| ||||| |||||| ||||||||||||    
T  16603 tgattttgaaagacttttttgttttaaaaaagtcttgtggtatttaatcaagatttt 16547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University