View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4927-Insertion-6 (Length: 148)

Name: NF4927-Insertion-6
Description: NF4927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4927-Insertion-6
NF4927-Insertion-6
[»] chr5 (7 HSPs)
chr5 (11-50)||(36501434-36501473)
chr5 (11-50)||(22408787-22408826)
chr5 (12-49)||(10169050-10169087)
chr5 (12-49)||(16039742-16039779)
chr5 (12-55)||(34969139-34969182)
chr5 (15-50)||(36628671-36628706)
chr5 (12-55)||(38163657-38163700)
[»] chr3 (17 HSPs)
chr3 (11-50)||(3354926-3354965)
chr3 (15-55)||(1807645-1807685)
chr3 (11-79)||(50420862-50420929)
chr3 (11-49)||(49579153-49579191)
chr3 (11-54)||(26465997-26466041)
chr3 (11-54)||(15311869-15311911)
chr3 (12-79)||(53255266-53255332)
chr3 (12-50)||(17258172-17258210)
chr3 (11-49)||(33687639-33687677)
chr3 (12-50)||(40988632-40988670)
chr3 (12-49)||(47284533-47284570)
chr3 (12-49)||(54716748-54716785)
chr3 (7-50)||(2181349-2181392)
chr3 (11-82)||(3354752-3354822)
chr3 (11-50)||(43902565-43902604)
chr3 (12-55)||(51226492-51226535)
chr3 (12-55)||(55228048-55228091)
[»] chr2 (13 HSPs)
chr2 (11-52)||(14289297-14289338)
chr2 (11-86)||(23993900-23993974)
chr2 (8-87)||(31227126-31227204)
chr2 (12-50)||(35500333-35500371)
chr2 (12-55)||(14983942-14983985)
chr2 (12-55)||(29370745-29370788)
chr2 (12-49)||(35180527-35180564)
chr2 (12-49)||(37343687-37343724)
chr2 (7-35)||(13491526-13491554)
chr2 (11-50)||(10522677-10522716)
chr2 (12-55)||(10857606-10857649)
chr2 (12-55)||(23048319-23048362)
chr2 (12-55)||(28719346-28719389)
[»] chr7 (12 HSPs)
chr7 (11-79)||(27756271-27756338)
chr7 (12-49)||(9477432-9477469)
chr7 (8-49)||(47030310-47030351)
chr7 (11-90)||(24432636-24432713)
chr7 (11-55)||(35793404-35793448)
chr7 (11-50)||(43657836-43657875)
chr7 (17-79)||(9500149-9500210)
chr7 (12-46)||(24679086-24679120)
chr7 (12-50)||(30283440-30283478)
chr7 (12-87)||(9477131-9477205)
chr7 (11-50)||(28960681-28960719)
chr7 (12-55)||(46199082-46199125)
[»] chr8 (12 HSPs)
chr8 (12-55)||(8409807-8409850)
chr8 (12-55)||(29196604-29196647)
chr8 (12-55)||(45522433-45522476)
chr8 (12-50)||(5645767-5645805)
chr8 (12-86)||(8951039-8951112)
chr8 (12-49)||(7477372-7477409)
chr8 (6-50)||(9498943-9498987)
chr8 (11-86)||(2044674-2044747)
chr8 (11-50)||(5899244-5899283)
chr8 (11-50)||(9234721-9234760)
chr8 (11-50)||(29219110-29219149)
chr8 (11-50)||(29219364-29219403)
[»] chr4 (14 HSPs)
chr4 (11-50)||(3369881-3369920)
chr4 (22-96)||(37831581-37831654)
chr4 (11-55)||(33122859-33122903)
chr4 (13-88)||(52865377-52865451)
chr4 (12-55)||(53831181-53831224)
chr4 (12-50)||(49804338-49804376)
chr4 (12-49)||(26858379-26858416)
chr4 (17-85)||(13825881-13825947)
chr4 (11-75)||(16322987-16323050)
chr4 (7-47)||(19938563-19938603)
chr4 (12-55)||(3901688-3901731)
chr4 (12-55)||(8143062-8143105)
chr4 (12-55)||(30064031-30064074)
chr4 (12-55)||(33168114-33168157)
[»] scaffold1088 (1 HSPs)
scaffold1088 (11-49)||(2111-2149)
[»] chr6 (10 HSPs)
chr6 (12-50)||(12799034-12799072)
chr6 (9-55)||(30369813-30369858)
chr6 (11-75)||(1615039-1615103)
chr6 (12-49)||(2840824-2840861)
chr6 (12-49)||(12730577-12730614)
chr6 (12-44)||(499346-499378)
chr6 (11-55)||(1894477-1894521)
chr6 (11-50)||(1614848-1614887)
chr6 (11-50)||(2164698-2164737)
chr6 (11-50)||(2176331-2176370)
[»] chr1 (11 HSPs)
chr1 (8-50)||(29816410-29816451)
chr1 (12-50)||(37008251-37008289)
chr1 (12-47)||(367161-367196)
chr1 (12-49)||(13344417-13344454)
chr1 (11-75)||(10231117-10231180)
chr1 (11-79)||(13575143-13575209)
chr1 (15-50)||(1484404-1484439)
chr1 (11-50)||(22347551-22347590)
chr1 (12-55)||(46573069-46573112)
chr1 (12-55)||(50503730-50503773)
chr1 (12-55)||(50504792-50504835)
[»] scaffold0006 (1 HSPs)
scaffold0006 (8-79)||(162281-162351)
[»] scaffold0092 (1 HSPs)
scaffold0092 (11-77)||(37792-37856)
[»] scaffold0047 (2 HSPs)
scaffold0047 (12-49)||(63070-63107)
scaffold0047 (12-49)||(63305-63342)
[»] scaffold0854 (1 HSPs)
scaffold0854 (12-55)||(3369-3412)
[»] scaffold0286 (1 HSPs)
scaffold0286 (11-50)||(17672-17711)


Alignment Details
Target: chr5 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 36501473 - 36501434
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36501473 attgtattttattttgttaggggaccaaaatcgcaacttc 36501434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 22408787 - 22408826
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  22408787 attgtattttattttgttagggggtcaaaatcgcaacttc 22408826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 10169087 - 10169050
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  10169087 ttgtattttaattagttaggggaccaaaatcgcaactt 10169050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 16039742 - 16039779
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  16039742 ttgtattttaattagttaggggaccaaaatcgcaactt 16039779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 34969139 - 34969182
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    ||||||| |||||||||| ||| |||||||||||||||| ||||    
T  34969139 ttgtattatattttgttatgggtccaaaatcgcaacttcttaaa 34969182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 36628671 - 36628706
Alignment:
Q  15 tattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||| ||||||||||||||| ||||||||    
T  36628671 tattttattttattaggggaccaaaattgcaacttc 36628706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 38163657 - 38163700
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    |||||||||| || |||||||| |||||||||||||||| ||||    
T  38163657 ttgtattttaattagttagggggccaaaatcgcaacttcttaaa 38163700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 3354926 - 3354965
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3354926 attgtattttattttgttaggggaccaaaatcgcaacttc 3354965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 1807645 - 1807685
Alignment:
Q  15 tattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  1807645 tattttattttgttaggggaccaaaatcgcaacttcttaaa 1807685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 50420862 - 50420929
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcataaatacttacgaggctaaaactgctat 79  Q
    ||||| ||||||||||||| |||  ||||||||||||||||| |||||||| ||||| |||||||||||    
T  50420862 attgtgttttattttgttaaggggtcaaaatcgcaacttcat-aatacttaggaggccaaaactgctat 50420929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 49579153 - 49579191
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  49579153 attgtattttattttgttaggggactaaaatcgcaactt 49579191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 26466041 - 26465997
Alignment:
Q  11 attgtattttattttgtta-ggggaccaaaatcgcaacttcataa 54  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||    
T  26466041 attgtattttattttgttaggggggccaaaatcgcaacttcataa 26465997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 15311911 - 15311869
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcataa 54  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||    
T  15311911 attgtattttattttgttagggg-ccaaaattgcaacttcataa 15311869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 53255266 - 53255332
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaatacttacgaggctaaaactgctat 79  Q
    ||||| ||||||| |||||||| |||||||||||||||| |||| || || ||||| |||||||||||    
T  53255266 ttgtagtttatttagttagggggccaaaatcgcaacttcttaaa-acataggaggccaaaactgctat 53255332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 17258172 - 17258210
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  17258172 ttgtattttaatttgttaggggtccaaaatcgcaacttc 17258210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 33687677 - 33687639
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  33687677 attgtattttattttgttagggggctaaaatcgcaactt 33687639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 40988670 - 40988632
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||||||||| || |||||||||||||||||||||||||    
T  40988670 ttgtattttaattagttaggggaccaaaatcgcaacttc 40988632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 47284533 - 47284570
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  47284533 ttgtattttaattagttaggggaccaaaatcgcaactt 47284570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 54716748 - 54716785
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  54716748 ttgtattttaattagttaggggaccaaaatcgcaactt 54716785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 2181392 - 2181349
Alignment:
Q  7 atgtattgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||| |||||||||| || |||||||| ||||||||||||||||    
T  2181392 atgttttgtattttaattcgttaggggtccaaaatcgcaacttc 2181349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 3354822 - 3354752
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcataaatacttacgaggctaaaactgctataaa 82  Q
    ||||||||||||||| ||||| | |||||||||||| ||| |  ||||||| | ||| ||||||||||||||    
T  3354822 attgtattttattttcttaggaggccaaaatcgcaatttcct-gatacttagggggccaaaactgctataaa 3354752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 43902604 - 43902565
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||||||| ||| |||||||| |||||||    
T  43902604 attgtattttattttgttaaggggccaaaatcacaacttc 43902565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 51226492 - 51226535
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    |||||||||| || |||||||| |||||||||||||||| ||||    
T  51226492 ttgtattttaattagttaggggtccaaaatcgcaacttcttaaa 51226535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 55228048 - 55228091
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    |||||||||| || |||||||| |||||||||||||||| ||||    
T  55228048 ttgtattttaattagttaggggtccaaaatcgcaacttcttaaa 55228091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 14289338 - 14289297
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcat 52  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  14289338 attgtattttattttgttagggggccaaaatcgcaacttcat 14289297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 23993900 - 23993974
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcataaatacttacgaggctaaaactgctataaaacct 86  Q
    ||||||||||||||||||||||| ||||||| |||||||| | |||||||| |  || ||||||||||| ||||||    
T  23993900 attgtattttattttgttagggggccaaaattgcaacttc-ttaatacttagggagccaaaactgctattaaacct 23993974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 31227126 - 31227204
Alignment:
Q  8 tgtattgtattttattttgttaggggaccaaaatcgcaacttcataaatacttacgaggctaaaactgctataaaacctt 87  Q
    ||||||||||||||||||||||| ||  ||||||||||||||| |  ||| ||| ||||| ||||||||||| |||||||    
T  31227126 tgtattgtattttattttgttagagggtcaaaatcgcaacttcct-gatatttaggaggccaaaactgctattaaacctt 31227204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 35500333 - 35500371
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  35500333 ttgtattttattttgttagggggccaaaatcgcaacttc 35500371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 14983942 - 14983985
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    |||||||||| || ||||||||||||||||||||||||| ||||    
T  14983942 ttgtattttaattagttaggggaccaaaatcgcaacttcttaaa 14983985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 29370788 - 29370745
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    |||||||||||||||| |||||| ||||||||||||||| ||||    
T  29370788 ttgtattttattttgtcaggggatcaaaatcgcaacttcttaaa 29370745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 35180527 - 35180564
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  35180527 ttgtattttaatttgttagggggccaaaatcgcaactt 35180564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 37343724 - 37343687
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  37343724 ttgtattttaattagttaggggaccaaaatcgcaactt 37343687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 13491554 - 13491526
Alignment:
Q  7 atgtattgtattttattttgttaggggac 35  Q
    |||||||||||||||||||||||||||||    
T  13491554 atgtattgtattttattttgttaggggac 13491526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 10522716 - 10522677
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||| |||| ||||||||||| |||||||    
T  10522716 attgtattttattttattagtggaccaaaatcacaacttc 10522677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 10857606 - 10857649
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    |||||||||| || |||||||| ||||||||||||||| |||||    
T  10857606 ttgtattttaattagttagggggccaaaatcgcaactttataaa 10857649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 23048362 - 23048319
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    |||||||||| || |||||||| |||||||||||||||| ||||    
T  23048362 ttgtattttaattagttagggggccaaaatcgcaacttcttaaa 23048319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 28719389 - 28719346
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    |||||||||| || |||||||| |||||||||||||||| ||||    
T  28719389 ttgtattttaattagttagggggccaaaatcgcaacttcttaaa 28719346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 27756338 - 27756271
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcataaatacttacgaggctaaaactgctat 79  Q
    ||||||||||||||||||||||| |||||||||||||| | | |||||||| | ||| |||||||||||    
T  27756338 attgtattttattttgttagggggccaaaatcgcaactacct-aatacttaaggggccaaaactgctat 27756271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 9477432 - 9477469
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||||||||||||||| |||||||||||||||    
T  9477432 ttgtattttattttgttagggggccaaaatcgcaactt 9477469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 47030351 - 47030310
Alignment:
Q  8 tgtattgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  47030351 tgtattgtattttattttgttatgggatcaaaatcgcaactt 47030310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 24432636 - 24432713
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcataaatacttacgaggctaaaactgctataaaaccttatt 90  Q
    |||||||||||||||||||| |  |||||||||||||| |   |||||||| | ||| ||||||||||| ||||||||||    
T  24432636 attgtattttattttgttagtgagccaaaatcgcaactcc--taatacttaaggggccaaaactgctattaaaccttatt 24432713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 35793448 - 35793404
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    ||||||||||||||||||||||| | |||||||||||||| ||||    
T  35793448 attgtattttattttgttaggggcctaaaatcgcaacttcctaaa 35793404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 43657836 - 43657875
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  43657836 attgtattttattttgttagggtgccaaaatcgcaacttc 43657875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 9500149 - 9500210
Alignment:
Q  17 ttttattttgttaggggaccaaaatcgcaacttcataaatacttacgaggctaaaactgctat 79  Q
    |||| |||| |||||||||||||||||||||||| | || ||||| | |||||||||||||||    
T  9500149 tttttttttcttaggggaccaaaatcgcaacttcttgaa-acttagggggctaaaactgctat 9500210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 24679086 - 24679120
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaa 46  Q
    |||||||||||||||||||||| ||||||||||||    
T  24679086 ttgtattttattttgttagggggccaaaatcgcaa 24679120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 30283478 - 30283440
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  30283478 ttgtattttattttgttatggggccaaaatcgcaacttc 30283440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 9477205 - 9477131
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaatacttacgaggctaaaactgctataaaacctt 87  Q
    |||||||||||||||||| ||| | |||||||||||||  |||| || || | ||| ||||||||||| |||||||    
T  9477205 ttgtattttattttgttaaggggctaaaatcgcaactttttaaa-acatagggggccaaaactgctattaaacctt 9477131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 28960719 - 28960681
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  28960719 attgtattttattttgtta-gggaccaaaatcacaacttc 28960681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 46199125 - 46199082
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    ||||| |||||||  |||||||||||||||||||||||| ||||    
T  46199125 ttgtagtttatttatttaggggaccaaaatcgcaacttcttaaa 46199082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 8409807 - 8409850
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    |||||||||||||||||||||| |||||||||||||||| ||||    
T  8409807 ttgtattttattttgttaggggcccaaaatcgcaacttcttaaa 8409850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 29196604 - 29196647
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    ||||||||||||||||||| |||||| |||||||||||| ||||    
T  29196604 ttgtattttattttgttagaggaccataatcgcaacttcttaaa 29196647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 45522433 - 45522476
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    |||||||||||||||||||||| | |||||||||||||| ||||    
T  45522433 ttgtattttattttgttagggggctaaaatcgcaacttcttaaa 45522476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 5645767 - 5645805
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  5645767 ttgtattttattttgttagggggccaaaatcacaacttc 5645805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 8951112 - 8951039
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaatacttacgaggctaaaactgctataaaacct 86  Q
    |||||||||| || ||||||||||||||||| ||||||| |||| || || |||||||||| ||| || ||||||    
T  8951112 ttgtattttaattggttaggggaccaaaatcacaacttcttaaa-acataggaggctaaaagtgcaattaaacct 8951039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 7477409 - 7477372
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  7477409 ttgtattttaattagttaggggaccaaaatcgcaactt 7477372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 9498987 - 9498943
Alignment:
Q  6 catgtattgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||| ||||||||||||||||||| |||  |||||||||||||||    
T  9498987 catgaattgtattttattttgttatggggtcaaaatcgcaacttc 9498943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 2044747 - 2044674
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcataaatacttacgaggctaaaactgctataaaacct 86  Q
    ||||||||||||||||||| ||| || ||||||||| |||||  ||||||| | ||| ||||||||||| ||||||    
T  2044747 attgtattttattttgttatggggccgaaatcgcaatttcat-gatactta-ggggccaaaactgctattaaacct 2044674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 5899283 - 5899244
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||||||||||  || |||||||||||||    
T  5899283 attgtattttattttgttagggagccgaaatcgcaacttc 5899244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 9234721 - 9234760
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||| |||||||| || ||||||||||||||||    
T  9234721 attgtattttaatttgttagagggccaaaatcgcaacttc 9234760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 29219149 - 29219110
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||| ||||||||| |||||| |||||||    
T  29219149 attgtattttattttattaggggactaaaatcacaacttc 29219110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 29219364 - 29219403
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||| ||||||||||||||| | ||||||||||||||    
T  29219364 attgtatattattttgttagggggctaaaatcgcaacttc 29219403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 3369920 - 3369881
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  3369920 attgtattttattttgttagggggccaaaatcgcaacttc 3369881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 37831654 - 37831581
Alignment:
Q  22 ttttgttaggggaccaaaatcgcaacttcataaatacttacgaggctaaaactgctataaaaccttattaatatt 96  Q
    |||| ||||||| |||||||||||||||| |||| ||||| | ||||||||||||||| ||||| |||| |||||    
T  37831654 ttttcttagggggccaaaatcgcaacttcttaaa-acttagggggctaaaactgctattaaaccatatttatatt 37831581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 33122859 - 33122903
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||||    
T  33122859 attgtattttattttgtttggggatcaaaatcgcaacttcctaaa 33122903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 52865451 - 52865377
Alignment:
Q  13 tgtattttattttgttaggggaccaaaatcgcaacttcataaatacttacgaggctaaaactgctataaaacctta 88  Q
    |||| ||| |||| |||| ||||||||||||||||||| |||| ||||| | |||| |||||||||| ||||||||    
T  52865451 tgtagttttttttcttagaggaccaaaatcgcaacttcttaaa-acttatggggctgaaactgctattaaacctta 52865377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 53831224 - 53831181
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||    
T  53831224 ttgtagtttatttagttaggggaccaaaatcgcaacttcttaaa 53831181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 49804338 - 49804376
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  49804338 ttgtattttatttttttaggggatcaaaatcgcaacttc 49804376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 26858416 - 26858379
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  26858416 ttgtattttaattagttaggggaccaaaatcgcaactt 26858379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 13825947 - 13825881
Alignment:
Q  17 ttttattttgttaggggaccaaaatcgcaacttcataaatacttacgaggctaaaactgctataaaacc 85  Q
    |||| |||| ||||||| |||||||||||||||| |||| ||||| | ||||||||||||||| |||||    
T  13825947 tttttttttcttaggggcccaaaatcgcaacttcttaaa-actta-ggggctaaaactgctattaaacc 13825881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 16323050 - 16322987
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcataaatacttacgaggctaaaactg 75  Q
    ||||||||||||||||||| |||  ||||||||||||||| | |||||||| | ||| |||||||    
T  16323050 attgtattttattttgttatggggtcaaaatcgcaacttc-ttaatacttaaggggccaaaactg 16322987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 19938563 - 19938603
Alignment:
Q  7 atgtattgtattttattttgttaggggaccaaaatcgcaac 47  Q
    |||| ||||||||||||| |||||||| |||||||||||||    
T  19938563 atgttttgtattttatttagttagggggccaaaatcgcaac 19938603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 3901688 - 3901731
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    |||||||||||||| ||||||| | |||||||||||||| ||||    
T  3901688 ttgtattttattttattagggggctaaaatcgcaacttcttaaa 3901731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 8143105 - 8143062
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    |||||||||| || |||||||| |||||||||||||||| ||||    
T  8143105 ttgtattttaattagttaggggtccaaaatcgcaacttcttaaa 8143062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 30064074 - 30064031
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    ||||| |||| || ||||||||||||||||||||||||| ||||    
T  30064074 ttgtagtttacttagttaggggaccaaaatcgcaacttcttaaa 30064031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 33168114 - 33168157
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    |||||||||| || |||||||||||||||||| |||||| ||||    
T  33168114 ttgtattttaattagttaggggaccaaaatcgaaacttcttaaa 33168157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1088 (Bit Score: 35; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1088
Description:

Target: scaffold1088; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 2111 - 2149
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  2111 attgtattttattttgttagggggccaaaatcgcaactt 2149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 12799034 - 12799072
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  12799034 ttgtattttattttgttaggtgaccaaaatcgcaacttc 12799072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 30369858 - 30369813
Alignment:
Q  9 gtattgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    |||| ||||||||||||||||||||| ||||||||||||||| ||||    
T  30369858 gtatagtattttattttgttagggga-caaaatcgcaacttcttaaa 30369813  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 1615039 - 1615103
Alignment:
Q  11 attgtattttattttgtta-ggggaccaaaatcgcaacttcataaatacttacgaggctaaaactg 75  Q
    ||||||||||||||||||| |||| |||||||||||||||  | |||||||| | |||||||||||    
T  1615039 attgtattttattttgttaggggggccaaaatcgcaactttct-aatacttagggggctaaaactg 1615103  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 2840861 - 2840824
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  2840861 ttgtattttttttttttaggggaccaaaatcgcaactt 2840824  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 12730577 - 12730614
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  12730577 ttgtattttaattagttaggggaccaaaatcgcaactt 12730614  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 499346 - 499378
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgc 44  Q
    ||||| |||||||||||||||||||||||||||    
T  499346 ttgtaatttattttgttaggggaccaaaatcgc 499378  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 1894521 - 1894477
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    ||||||||||||||| ||||| |||||||||| |||||| |||||    
T  1894521 attgtattttattttattaggtgaccaaaatcacaactttataaa 1894477  T

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Target: chr6; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 1614887 - 1614848
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||||||||| | ||| ||||||||||||    
T  1614887 attgtattttattttgttaggaggccacaatcgcaacttc 1614848  T

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Target: chr6; HSP #9
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 2164698 - 2164737
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||||||||||   |||||||||||||||    
T  2164698 attgtattttattttgttagggtgtcaaaatcgcaacttc 2164737  T

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Target: chr6; HSP #10
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 2176331 - 2176370
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||||||||||   |||||||||||||||    
T  2176331 attgtattttattttgttagggtgtcaaaatcgcaacttc 2176370  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 29816410 - 29816451
Alignment:
Q  8 tgtattgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  29816410 tgtattgtattttattttgtt-ggggaccaaaatcgcaacttc 29816451  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 37008289 - 37008251
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  37008289 ttgtattttattttgttagggggccaaaatcgcaacttc 37008251  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 367161 - 367196
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaac 47  Q
    |||||||||||||||||||||| |||||||||||||    
T  367161 ttgtattttattttgttagggggccaaaatcgcaac 367196  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 13344417 - 13344454
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  13344417 ttgtattttaattagttaggggaccaaaatcgcaactt 13344454  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 10231117 - 10231180
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcataaatacttacgaggctaaaactg 75  Q
    |||||||||||||||||||| || ||||||||| |||||| | |||||||| | ||| |||||||    
T  10231117 attgtattttattttgttagagggccaaaatcgaaacttc-ttaatacttagggggccaaaactg 10231180  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 13575143 - 13575209
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcataaatacttacgaggctaaaactgctat 79  Q
    ||||||||||||||||||| ||| ||||||||||| |||| |  ||||||| | |||||||||||||||    
T  13575143 attgtattttattttgttatggg-ccaaaatcgcatcttcct-gatacttagggggctaaaactgctat 13575209  T

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Target: chr1; HSP #7
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 1484439 - 1484404
Alignment:
Q  15 tattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||||||||||||||| || ||||||||||||||||    
T  1484439 tattttattttgttagagggccaaaatcgcaacttc 1484404  T

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Target: chr1; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 22347590 - 22347551
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||||||||||||  |||| |||||||||    
T  22347590 attgtattttattttgttaggggagtaaaagcgcaacttc 22347551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 46573069 - 46573112
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    ||||| ||| |||| |||||||||||||||||||||||| ||||    
T  46573069 ttgtagttttttttcttaggggaccaaaatcgcaacttcgtaaa 46573112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 50503773 - 50503730
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    |||||||||| || |||||||| |||||||||||||||| ||||    
T  50503773 ttgtattttaattagttagggggccaaaatcgcaacttcttaaa 50503730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 50504792 - 50504835
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    |||||||||| || |||||||| |||||||||||||||| ||||    
T  50504792 ttgtattttaattagttaggggtccaaaatcgcaacttcttaaa 50504835  T

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Target: scaffold0006 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 162281 - 162351
Alignment:
Q  8 tgtattgtattttattttgttaggggaccaaaatcgcaacttcataaatacttacgaggctaaaactgctat 79  Q
    |||||||||||||||||||||||||| |||||||| || ||||   |||||||| | ||| |||||||||||    
T  162281 tgtattgtattttattttgttagggggccaaaatcacatcttc-ccaatacttaaggggccaaaactgctat 162351  T

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Target: scaffold0092 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 37856 - 37792
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcataaatacttacgaggctaaaactgct 77  Q
    |||||||||||||||||||||||  ||||||||||||||| |  ||||||| | |||||||||||||    
T  37856 attgtattttattttgttagggg-tcaaaatcgcaacttcct-gatacttagggggctaaaactgct 37792  T

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Target: scaffold0047 (Bit Score: 30; Significance: 0.00000005; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 63107 - 63070
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  63107 ttgtattttaattagttaggggaccaaaatcgcaactt 63070  T

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Target: scaffold0047; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 63305 - 63342
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  63305 ttgtattttaattagttaggggaccaaaatcgcaactt 63342  T

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Target: scaffold0854 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 3369 - 3412
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcataaa 55  Q
    |||||||||| || |||||||| |||||||||||||||| ||||    
T  3369 ttgtattttaattagttagggggccaaaatcgcaacttcttaaa 3412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 17711 - 17672
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||||||||||   |||||||||||||||    
T  17711 attgtattttattttgttagggtgtcaaaatcgcaacttc 17672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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