View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4927-Insertion-7 (Length: 344)
Name: NF4927-Insertion-7
Description: NF4927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4927-Insertion-7 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 55262933 - 55262597
Alignment:
| Q |
8 |
acaagagcttggtggggagatcactctgcaaccagggccaattcctggccttaacacaaaggtcacttcctttttagatccagatggatggaaaactgta |
107 |
Q |
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| T |
55262933 |
acaagagcttggaggggagatcactctgcaaccagggccaattcctggccttaacacaaaggtcacttcctttttagatccagatggatggaaaactgta |
55262834 |
T |
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| Q |
108 |
agtttgtgtttcctccaaacttccgtacaaaatcttagtggtcgg----tcggtgaacgaccacattacaaatgcatcaatgcctataggtttctaatat |
203 |
Q |
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| T |
55262833 |
agtttgtgtttcctccaaactcccgtacaaaaccttagtggtcggtcgttcggtgaacgaccacattacaaatgcatcaatgcctataggtttctaatat |
55262734 |
T |
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| Q |
204 |
catgtttaannnnnnngtgtaggcgttggttgac-atgaggatttcctgaaggaactggaatgaagagcgagctaataacaagaaataaggagcagtcct |
302 |
Q |
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| T |
55262733 |
catgtttaatttttttgtgtaggcgttggttgacaatgaagatttcctgaaggaactggagtgaagagcgagc---taacaagaaataagtagcagtcct |
55262637 |
T |
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| Q |
303 |
aggtagcgacactagggtagtgcttttgtgtgaacaataaaa |
344 |
Q |
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| T |
55262636 |
aggtagtgacactagggtagtgc--ttgtgtgaacaataaaa |
55262597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 116 - 344
Target Start/End: Complemental strand, 55269524 - 55269300
Alignment:
| Q |
116 |
tttcctccaaacttccgtacaaaatcttagtggtcggtcggtgaacgaccacattacaaatgcatcaatgcctataggtttctaatatcatgtttaannn |
215 |
Q |
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| T |
55269524 |
tttcctccaaactctcgtacaaaaccttagtgttcggtcagtgaatgaccacatgacaaatgcatcaatgcctagaggtttctaacatcatgttaatttt |
55269425 |
T |
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| Q |
216 |
nnnngtgtaggcgttggttgaca-tgaggatttcctgaaggaactggaatgaagagcgagctaataacaagaaataaggagcagtcctaggtagcgacac |
314 |
Q |
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| T |
55269424 |
ttgtgtgtaggtgttagttgacaatgaagatttcctgaaggaactggagtgaagagcgagctaa---caagaaataagtagcagtcctaggtagtgacac |
55269328 |
T |
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| Q |
315 |
tagggtagtgcttttgtgtgaacaataaaa |
344 |
Q |
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| T |
55269327 |
tagggtagtgc--ttgtgtgaacaataaaa |
55269300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 55269796 - 55269694
Alignment:
| Q |
9 |
caagagcttggtggggagatcactctgcaaccagggccaattcctggccttaacacaaaggtcacttcctttttagatccagatggatggaaaactgtaa |
108 |
Q |
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| T |
55269796 |
caagagcttggagggaagatcactcggcaaccagggccaattcccggccttaacacaaaagtcgtttcttttttagatccagatggatggaaaactgtaa |
55269697 |
T |
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| Q |
109 |
gtt |
111 |
Q |
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| T |
55269696 |
gtt |
55269694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 8300933 - 8300857
Alignment:
| Q |
35 |
gcaaccagggccaattcctggccttaacacaaaggtcacttcctttttagatccagatggatggaaaactgtaagtt |
111 |
Q |
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| T |
8300933 |
gcaaccagggccaatccctggcctcaacacaaagatcacttctttcttagatccagatggatggaaaactgtgagtt |
8300857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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