View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4927-Insertion-9 (Length: 135)
Name: NF4927-Insertion-9
Description: NF4927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4927-Insertion-9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 1e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 1e-66
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 33675453 - 33675326
Alignment:
| Q |
8 |
cttttacctcatctggtgtacagagatacattgaattttactattttaggttaatccttcaaatgaagaaggaacaatttttcctcaaatttcaaaattg |
107 |
Q |
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| T |
33675453 |
cttttacctcatctggtgtacagagatacattgaattttactattttaggttaatccttcaaatgaagaaggaacaatttttcctcaaatttcaaaattg |
33675354 |
T |
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| Q |
108 |
aagcatatatacaaggtgttgattttcg |
135 |
Q |
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| T |
33675353 |
aagcatatatacaaggtgttgattttcg |
33675326 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 33737239 - 33737183
Alignment:
| Q |
50 |
attttaggttaatccttcaaatgaagaaggaacaatttttcctcaaatttcaaaatt |
106 |
Q |
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| T |
33737239 |
attttcggttgatccttcaaatgaagaaggaactagttttccccaaatttcataatt |
33737183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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