View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4927_high_7 (Length: 350)
Name: NF4927_high_7
Description: NF4927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4927_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 339
Target Start/End: Original strand, 33051664 - 33051989
Alignment:
| Q |
15 |
atcattttaagactgttttaataagttcaatcatgctaggaaccttcatgaccgagtctgaaagaactctttaannnnnnngtggctcaaatttcctaaa |
114 |
Q |
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| T |
33051664 |
atcattttaagactgttttaataagttcaatcatgctaggaaccttcatgaccgagtctgaaagaactcttcaatttttttgtggctcaaatttcctaaa |
33051763 |
T |
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| Q |
115 |
tcattgattgtcaaattaagtctagacccttcacccctttttgtttcgtcctggctagtctagttaatt-accagaaacaaagtttctaaatctcttggg |
213 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33051764 |
tcattgattgtcaaattaagtctagaaccttcacccctttttgtttcgtcctggctagtctagttaatttaccagaaacaaagtttctaaatctcttggg |
33051863 |
T |
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| Q |
214 |
ggtaaccataaaaactccaagttatttgcacactttataccaaatattattccaaacttcgcacaaagaataaatgttgttccaattcttgattccaaga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33051864 |
ggtaaccataaaaactccaagttatttgcacactttatacaaaatattaatccaaacttcgcacaaagaataaatgttgttccaattcttgattccaaga |
33051963 |
T |
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| Q |
314 |
gcacaaacacaagtagtagcattcat |
339 |
Q |
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|||||||||||||||||||||||||| |
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| T |
33051964 |
gcacaaacacaagtagtagcattcat |
33051989 |
T |
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