View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4927_low_10 (Length: 345)
Name: NF4927_low_10
Description: NF4927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4927_low_10 |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold0303 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 24171521 - 24171850
Alignment:
| Q |
1 |
agttttgctctcaaagttaaggatcaatgaaataatttccttcaatccaggttgctacaagtgtggtaaaaatggtcacataaaatccaattgtccacta |
100 |
Q |
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| T |
24171521 |
agttttgctctcaaagtta-ggatcaatgaaagaatttccttcaatccaagttgctacaagtgtggtaaaaatggtcacataaaatccaattgtccacta |
24171619 |
T |
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| Q |
101 |
agtcaaaagacatatacaaaatgaaagaggacttatatcgattgggatgaaaaagacacaaacttatatgatgaatcagaaaatgaagtagcatgtttat |
200 |
Q |
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| T |
24171620 |
agtcaaaagatatatacaaaatgaaagagggcttatatcgcttgggatgacaaagacacaaacttatatgatgaatcagaaaatgaagtagcatgtttat |
24171719 |
T |
|
| Q |
201 |
gtttcatggcaaaccataaggaagatgggatcaattcttttgaatttgaatgtgaattaacttatgatgagttatttaatatctgtaaagaattaaatga |
300 |
Q |
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| T |
24171720 |
gtttcatggcaaaccataaggaagatgagatcaattcttttgaatttgaatgtgaattaacttatgatgagttatttaatatctgtaaagaattaaatga |
24171819 |
T |
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| Q |
301 |
tgaattaactaagcttagaaaaatagtttct |
331 |
Q |
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| T |
24171820 |
tgaattaactaagcttagaaaaattgtttct |
24171850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 240 - 330
Target Start/End: Original strand, 14859489 - 14859579
Alignment:
| Q |
240 |
ttgaatttgaatgtgaattaacttatgatgagttatttaatatctgtaaagaattaaatgatgaattaactaagcttagaaaaatagtttc |
330 |
Q |
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| T |
14859489 |
ttgaatttgaatatgacttaacttatgatgagttgtttactatttgtaaagaattaaaagatgagtcaactacgcttagaaaaattgtttc |
14859579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 34 - 330
Target Start/End: Complemental strand, 115055 - 114759
Alignment:
| Q |
34 |
aatttccttcaatccaggttgctacaagtgtggtaaaaatggtcacataaaatccaattgtccactaagtcaaaagacatatacaaaatgaaagaggact |
133 |
Q |
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|||||||||| ||||| |||| ||||||||||| |||| |||||||||| |||||||| || ||||||||||||| |||||||||| |||||||| || |
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| T |
115055 |
aatttccttccatccaaattgcaacaagtgtggtgaaaagggtcacataacatccaattttcttctaagtcaaaagagatatacaaaaggaaagagggct |
114956 |
T |
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| Q |
134 |
tatatcgattgggatgaaaaagacacaaacttatatgatgaatcagaaaatgaagtagcatgtttatgtttcatggcaaaccataaggaagatgggatca |
233 |
Q |
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||||||| || |||||| ||| | ||||||| || |||||||||||||||||||||||| || ||||||||||||||||||| | ||||||| | | | |
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| T |
114955 |
tatatcgcttcggatgacaaatatacaaactcatccaatgaatcagaaaatgaagtagcatattcatgtttcatggcaaaccatgatgaagatgaggtaa |
114856 |
T |
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| Q |
234 |
attcttttgaatttgaatgtgaattaacttatgatgagttatttaatatctgtaaagaattaaatgatgaattaactaagcttagaaaaatagtttc |
330 |
Q |
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| T |
114855 |
actctattgaatctgaatatgacttaacttatgatgagttgtttactatttgtaaagaattaaatgatgagtcaactaagcttagaaaaattgtttc |
114759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0303 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 132 - 331
Target Start/End: Original strand, 19185 - 19384
Alignment:
| Q |
132 |
cttatatcgattgggatgaaaaagacacaaacttatatgatgaatcagaaaatgaagtagcatgtttatgtttcatggcaaaccataaggaagatgggat |
231 |
Q |
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||||||||| |||| |||| ||| || |||||| || |||||||||||||||||||||||| || |||||||||||||||| || ||||||||| | | |
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| T |
19185 |
cttatatcgcttggaatgacaaaaactcaaactcatccaatgaatcagaaaatgaagtagcatattcatgtttcatggcaaactatgaggaagatgaggt |
19284 |
T |
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| Q |
232 |
caattcttttgaatttgaatgtgaattaacttatgatgagttatttaatatctgtaaagaattaaatgatgaattaactaagcttagaaaaatagtttct |
331 |
Q |
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| T |
19285 |
aaactctattgaatctgaatatgacttaacttatgatgagttgtttactatttgtaaagaattaaatgatgagtcaactaagcttagaaaaattgtttct |
19384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 132 - 331
Target Start/End: Original strand, 3275498 - 3275697
Alignment:
| Q |
132 |
cttatatcgattgggatgaaaaagacacaaacttatatgatgaatcagaaaatgaagtagcatgtttatgtttcatggcaaaccataaggaagatgggat |
231 |
Q |
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||||||||| |||| |||| ||| || |||||| || |||||||||||||||||||||||| || |||||||||||||||| || ||||||||| | | |
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| T |
3275498 |
cttatatcgcttggaatgacaaaaactcaaactcatccaatgaatcagaaaatgaagtagcatattcatgtttcatggcaaactatgaggaagatgaggt |
3275597 |
T |
|
| Q |
232 |
caattcttttgaatttgaatgtgaattaacttatgatgagttatttaatatctgtaaagaattaaatgatgaattaactaagcttagaaaaatagtttct |
331 |
Q |
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|| ||| |||||| ||||| ||| ||||||||||||||||| |||| ||| |||||||||||||||||||| | |||||||||||||||||| |||||| |
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| T |
3275598 |
aaactctattgaatctgaatatgacttaacttatgatgagttgtttactatttgtaaagaattaaatgatgagtcaactaagcttagaaaaattgtttct |
3275697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 331
Target Start/End: Original strand, 8825064 - 8825153
Alignment:
| Q |
242 |
gaatttgaatgtgaattaacttatgatgagttatttaatatctgtaaagaattaaatgatgaattaactaagcttagaaaaatagtttct |
331 |
Q |
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|||| ||||| ||| ||||||||| | ||||| |||| ||| ||||||||||||||| |||| | ||| |||||||||||||| |||||| |
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| T |
8825064 |
gaatctgaatatgacttaacttattacgagttgtttactatttgtaaagaattaaataatgagtcaacaaagcttagaaaaattgtttct |
8825153 |
T |
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