View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4927_low_12 (Length: 309)
Name: NF4927_low_12
Description: NF4927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4927_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 28580316 - 28580559
Alignment:
| Q |
18 |
agtcccatgctcgcacaatagtcgtcaacagattgtcactaaaccccccagcaatctacaacacaaacaccatgtctcaaaatagttaagatcggcaagg |
117 |
Q |
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| T |
28580316 |
agtcccatgctcgcacaatagtcgtcaacagattgtcactaaaccccccagcaatctacaacacaaacaccatgtctcaaaatagttaagatcggcaatg |
28580415 |
T |
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| Q |
118 |
ttgtaaaatcaagagtccaaactcatttcatctatgtgaattcaactcgtaatatgtacacgacatttatactataataaaggcatcaactaatcaactg |
217 |
Q |
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| T |
28580416 |
ttgtaaaatcaagagtccaaactcatttcatctatgtgaattcaactcgtaatatgtacacgacatttatactataataaaggc--------atcaactg |
28580507 |
T |
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| Q |
218 |
atcaaaaactcaatatagtttaaattaacaatgaaatgtataaactatatat |
269 |
Q |
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| T |
28580508 |
atcaaaaactcaatatagtttaaattaacaatgaaatgtataaactatatat |
28580559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 28404483 - 28404395
Alignment:
| Q |
18 |
agtcccatgctcgcacaatagtcgtcaacagattgtcactaaaccccccagcaatctacaacacaaacaccatgtctcaaaatagttaag |
107 |
Q |
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| T |
28404483 |
agtcccatgctctcacaatgcttgtcaacagattgtcacacaaccctccagcaatctacaacac-aacaccattcctcaaaacagttaag |
28404395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 28417918 - 28417828
Alignment:
| Q |
18 |
agtcccatgctcgcacaatagtcgtcaacagattgtcactaaaccccccagcaatctacaacacaaacaccatgtctcaaaatagttaagat |
109 |
Q |
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| T |
28417918 |
agtcccatgctctcacaatgcttgtcaatagattgtcacacaaccctccagcaatctacaacacaaacaagatgtctc-taatagttaagat |
28417828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 28585316 - 28585404
Alignment:
| Q |
18 |
agtcccatgctcgcacaatagtcgtcaacagattgtcactaaaccccccagcaatctacaacacaaacaccatgtctcaaaatagttaag |
107 |
Q |
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| T |
28585316 |
agtcccatgctctcacaatgcttgtcaacagattgtcacacaaccctccagaaatctacaacac-aacaccattcctcaaaacagttaag |
28585404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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