View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4927_low_15 (Length: 240)
Name: NF4927_low_15
Description: NF4927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4927_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 45348556 - 45348796
Alignment:
| Q |
1 |
atgaaccaaattagaagacttttttgtgcgttgacactacccatagacgaagaccaaagaatgttgtttccttcattttttatgtataaatccattacat |
100 |
Q |
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| T |
45348556 |
atgaaccaaattagaagacttttttgtgcgttgacactacccatagacgaagaccaaagaatgtt---tacttcattttttatgtataaatccattacat |
45348652 |
T |
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| Q |
101 |
tctctttagaaatacctcattagatgacctatctctcttccatttctttattaaaagccagcacaactcaatttttcaggtatactata----tagtatt |
196 |
Q |
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| T |
45348653 |
tctctttagaaatacctcattagatgacctatctctcttccatttctttattgaaagccagcacaactcaatttttcaggtatactatataagtagtatt |
45348752 |
T |
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| Q |
197 |
caattattcatgcatgcttcccatgcattttcaattatttattt |
240 |
Q |
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| T |
45348753 |
caattattcatgcatgcttcccatgcattttcaattatttattt |
45348796 |
T |
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