View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4927_low_2 (Length: 414)
Name: NF4927_low_2
Description: NF4927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4927_low_2 |
 | |
|
| [»] scaffold0554 (1 HSPs) |
| | |
|
| [»] scaffold0059 (2 HSPs) |
| | |
|
| [»] scaffold1750 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0554 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 6374 - 6756
Alignment:
| Q |
19 |
agattgggcaatggcagaaatgataagggagccaagaataatgaagaaagcacaagctgaggtgagagaggtttttaaattgaatggaagggttgatgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||| ||||||||||| |||||||||| |
|
|
| T |
6374 |
agattgggcaatggcagaaatgataagggagccaagaataatgatgaaagcacaagctgaggtgcgagaagtttttacattgaatggaaaggttgatgaa |
6473 |
T |
|
| Q |
119 |
aattacattagcaaactcaattatttgaaatcagttgtcaaagaaacccttaggttacacccttcaggacctcttttgctaccaagagaatgtggtaaag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6474 |
aattacattagcaaactcaattatttgaaatcagtcgtcaaagaaacccttaggttacaccctccagcacctcttttgctaccaagagaatgtggtaaag |
6573 |
T |
|
| Q |
219 |
catgtgagataaatggttataacataccgtttaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactgggctgaaccagagag |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
6574 |
catgtgagataaatggttataacataccgtttaggagtaaggtgataatcaatgcttgggcaattgcaagagatccaaacttctggactgaaccagagag |
6673 |
T |
|
| Q |
319 |
gttttatccagagagattcactgacagcactattgactataaaggggataattttgagtacattccttttggtgctggaagaa |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6674 |
gttttatccagagagattcactgacagcactattgactataaagggggtaattttgagtacattccttttggtgctggaagaa |
6756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 23 - 401
Target Start/End: Complemental strand, 23039417 - 23039039
Alignment:
| Q |
23 |
tgggcaatggcagaaatgataagggagccaagaataatgaagaaagcacaagctgaggtgagagaggtttttaaattgaatggaagggttgatgaaaatt |
122 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||| ||| |||| ||||||||||||||||||| |
|
|
| T |
23039417 |
tgggcaatggtagaaatgataagggatccaagaataatgaagaaagcgcaagatgaggtgagagaggttttcaaaatgaaaggaagggttgatgaaaatt |
23039318 |
T |
|
| Q |
123 |
acattagcaaactcaattatttgaaatcagttgtcaaagaaacccttaggttacacccttcaggacctcttttgctaccaagagaatgtggtaaagcatg |
222 |
Q |
| |
|
||| | |||||||||||||||| |||||||||||||||||||| |||||||||||| || |||||||||||| |||||||||||| || || |||| |
|
|
| T |
23039317 |
gcatcaatgaactcaattatttgaagtcagttgtcaaagaaaccctgaggttacaccctccaacacctcttttgctgccaagagaatgtcgtcaaacatg |
23039218 |
T |
|
| Q |
223 |
tgagataaatggttataacataccgtttaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactgggctgaaccagagaggttt |
322 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| || ||||| ||| |
|
|
| T |
23039217 |
tgagataaatggttatcacatacctattaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaattactggactgagccggagagattt |
23039118 |
T |
|
| Q |
323 |
tatccagagagattcactgacagcactattgactataaaggggataattttgagtacattccttttggtgctggaagaa |
401 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||||||||| ||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
23039117 |
tatccagagagattccttgacagcgccattgactataaaggaagtaattatgagtacattccttttggtgccggaagaa |
23039039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 23146300 - 23145918
Alignment:
| Q |
19 |
agattgggcaatggcagaaatgataagggagccaagaataatgaagaaagcacaagctgaggtgagagaggtttttaaattgaatggaagggttgatgaa |
118 |
Q |
| |
|
|||||||||||||| |||| || ||| ||| |||||||| |||||||||||||||| |||||||||||||||||| ||| |||| ||||||||||||||| |
|
|
| T |
23146300 |
agattgggcaatggtagaattggtaaaggatccaagaatcatgaagaaagcacaagatgaggtgagagaggttttcaaaatgaaaggaagggttgatgaa |
23146201 |
T |
|
| Q |
119 |
aattacattagcaaactcaattatttgaaatcagttgtcaaagaaacccttaggttacacccttcaggacctcttttgctaccaagagaatgtggtaaag |
218 |
Q |
| |
|
|||| ||| | |||||||||||||||||| |||||||||||||||| | ||| |||||||| ||| |||||||||| |||| ||||||||| || ||| |
|
|
| T |
23146200 |
aattgcatcaatgaactcaattatttgaaattagttgtcaaagaaaccttaaggctacaccctccagcacctcttttgttaccgagagaatgtagtcaag |
23146101 |
T |
|
| Q |
219 |
catgtgagataaatggttataacataccgtttaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactgggctgaaccagagag |
318 |
Q |
| |
|
|||||| |||||||||||| |||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23146100 |
aatgtgatataaatggttatcacataccgattaagactaaggtgttagtcaatgcttgggcagttgcaagagatccaaactactggactgaaccagagag |
23146001 |
T |
|
| Q |
319 |
gttttatccagagagattcactgacagcactattgactataaaggggataattttgagtacattccttttggtgctggaagaa |
401 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23146000 |
gttttatccagagagattcatcgacagcgatattgactataaagggagtaactttgagtacattccttttggtgctggaagaa |
23145918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 23036550 - 23036168
Alignment:
| Q |
19 |
agattgggcaatggcagaaatgataagggagccaagaataatgaagaaagcacaagctgaggtgagagaggtttttaaattgaatggaagggttgatgaa |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||| || || |
|
|
| T |
23036550 |
agattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagag |
23036451 |
T |
|
| Q |
119 |
aattacattagcaaactcaattatttgaaatcagttgtcaaagaaacccttaggttacacccttcaggacctcttttgctaccaagagaatgtggtaaag |
218 |
Q |
| |
|
|||| || | | |||||| ||||||||||||||| |||||||||||||| |||||||||||| || ||||||||||||||||||||| |||| | ||| |
|
|
| T |
23036450 |
aattgtatcaacgaactcatttatttgaaatcagtcgtcaaagaaaccctgaggttacaccctccaacacctcttttgctaccaagagagtgtgttcaag |
23036351 |
T |
|
| Q |
219 |
catgtgagataaatggttataacataccgtttaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactgggctgaaccagagag |
318 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||||||| | | | ||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
23036350 |
catgtgtgataaatggttatcacatacctattaagagtaaggtaacaataaatgcttgggcaattgcaagagatccaaattactggactgaaccagagag |
23036251 |
T |
|
| Q |
319 |
gttttatccagagagattcactgacagcactattgactataaaggggataattttgagtacattccttttggtgctggaagaa |
401 |
Q |
| |
|
|||||||| |||||||||| |||||| |||||||||| |||||| ||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
23036250 |
attttatcccgagagattcatcgacagcgctattgactacaaagggagtaactttgagtacattccttttggtgccggaagaa |
23036168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 23017442 - 23017060
Alignment:
| Q |
19 |
agattgggcaatggcagaaatgataagggagccaagaataatgaagaaagcacaagctgaggtgagagaggtttttaaattgaatggaagggttgatgaa |
118 |
Q |
| |
|
||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| ||| ||||| || ||| | ||| |||| ||| ||||||||||| |
|
|
| T |
23017442 |
agattgggcaatgatagaaatgataaggaatccaagaataatgaagaaagcacaagatgaagtgagggatgttataaaaatgaaaggacgggttgatgaa |
23017343 |
T |
|
| Q |
119 |
aattacattagcaaactcaattatttgaaatcagttgtcaaagaaacccttaggttacacccttcaggacctcttttgctaccaagagaatgtggtaaag |
218 |
Q |
| |
|
|| | ||| | |||||| |||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23017342 |
aaatgcataaatgaactcagttatctgaaatcagttgtcaaagaaacccttagattacatccttcagtacctcttttgctaccaagagaatgtggtaaag |
23017243 |
T |
|
| Q |
219 |
catgtgagataaatggttataacataccgtttaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactgggctgaaccagagag |
318 |
Q |
| |
|
||||||||||| |||||||| ||||||| |||||| |||||||||| | |||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
23017242 |
catgtgagatacatggttatcacataccagttaagactaaggtgataattaatgcttgggcaatcgcaagagatccaaactactggactgaaccagagaa |
23017143 |
T |
|
| Q |
319 |
gttttatccagagagattcactgacagcactattgactataaaggggataattttgagtacattccttttggtgctggaagaa |
401 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||||||||||||||| ||| || || |||||||||||||||| |||||||| |
|
|
| T |
23017142 |
gttttatccagagagattcattgacaacggtattgactataaagggagtaacttcgaatacattccttttggtggtggaagaa |
23017060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 23149138 - 23148756
Alignment:
| Q |
19 |
agattgggcaatggcagaaatgataagggagccaagaataatgaagaaagcacaagctgaggtgagagaggtttttaaattgaatggaagggttgatgaa |
118 |
Q |
| |
|
|||||||||||||| ||| ||| ||| ||| ||||||||||||||||||||||||| |||||||||||||||||| ||| |||| |||| |||||||||| |
|
|
| T |
23149138 |
agattgggcaatggtagagatggtaaaggatccaagaataatgaagaaagcacaagatgaggtgagagaggttttcaaaatgaaaggaaaggttgatgaa |
23149039 |
T |
|
| Q |
119 |
aattacattagcaaactcaattatttgaaatcagttgtcaaagaaacccttaggttacacccttcaggacctcttttgctaccaagagaatgtggtaaag |
218 |
Q |
| |
|
|||| ||| | |||||||||||||||||| |||||||||||||||| | ||| |||||||| | | |||||||||| |||| ||||||||| || ||| |
|
|
| T |
23149038 |
aattgcatcaatgaactcaattatttgaaattagttgtcaaagaaaccttaaggctacaccctccggcacctcttttgttaccgagagaatgtagtcaag |
23148939 |
T |
|
| Q |
219 |
catgtgagataaatggttataacataccgtttaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactgggctgaaccagagag |
318 |
Q |
| |
|
| ||||| |||||||||||| |||| ||| |||||| ||| |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
23148938 |
cgtgtgatataaatggttatcacattccgattaagactaaagtgataatcaatgcttgggcaattgcaagagattcaaactactggactgaaccagagag |
23148839 |
T |
|
| Q |
319 |
gttttatccagagagattcactgacagcactattgactataaaggggataattttgagtacattccttttggtgctggaagaa |
401 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||||||||||||||| ||| || |||||||||||||||||||| ||||||| |
|
|
| T |
23148838 |
gttttatccagagagattcattgaaagcgatattgactataaagggagtaacttcgagtacattccttttggtgccggaagaa |
23148756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 23033079 - 23032712
Alignment:
| Q |
19 |
agattgggcaatggcagaaatgataagggagccaagaataatgaagaaagcacaagctgaggtgagagaggtttttaaattgaatggaagggttgatgaa |
118 |
Q |
| |
|
||||||||| ||| ||||||||||||| || | | |||||||||||||||||||||||||||||||||||||||| ||| |||| |||| |||||||||| |
|
|
| T |
23033079 |
agattgggcgatgacagaaatgataagagatcaacgaataatgaagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaaaggttgatgaa |
23032980 |
T |
|
| Q |
119 |
aattacattagcaaactcaattatttgaaatcagttgtcaaagaaacccttaggttacacccttcaggacctcttttgctaccaagagaatgtggtaaag |
218 |
Q |
| |
|
|||||||| | | |||||||||||||||||||| |||||||||||||||||||| |||||| ||| |||||||||||||||||||||||| ||| ||| |
|
|
| T |
23032979 |
aattacatccccgatctcaattatttgaaatcagtcgtcaaagaaacccttaggttccaccctacagtacctcttttgctaccaagagaatgcggtcaag |
23032880 |
T |
|
| Q |
219 |
catgtgagataaatggttataacataccgtttaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactgggctgaaccagagag |
318 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23032879 |
catgtgagataaatggttatcacataccaattaaaagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactggactgaaccag---- |
23032784 |
T |
|
| Q |
319 |
gttttatccagagagattcactgacagcactattgactataaaggggataattttgagtacattccttttggtgctggaagaa |
401 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| |||||||||||||||||| |||||||| ||||||| |
|
|
| T |
23032783 |
-----------agagattcatcgacagcgctattgactataaaggaagtaattttgagtacattccctttggtgccggaagaa |
23032712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 23140426 - 23140052
Alignment:
| Q |
19 |
agattgggcaatggcagaaatgataagggagccaagaataatgaagaaagcacaagctgaggtgagagaggtttttaaattgaatggaagggttgatgaa |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||| ||| |||| ||||||||||||||| |
|
|
| T |
23140426 |
agattgggcaatggtagaaatgataagggatccaagaataatgaagaaagtgcaagatgaggtgagagaggttttcaaaatgaaaggaagggttgatgaa |
23140327 |
T |
|
| Q |
119 |
aattacattagcaaactcaattatttgaaatcagttgtcaaagaaacccttaggttacacccttcaggacctcttttgctaccaagagaatgtggtaaag |
218 |
Q |
| |
|
|||| ||| | | | ||| |||||||||||||| | |||||||||||| | ||||||||| || | | |||||||||||||||||||| |||||| ||| |
|
|
| T |
23140326 |
aattgcatcaacgagctccattatttgaaatcaatcgtcaaagaaaccttgaggttacacactccggtgcctcttttgctaccaagagagtgtggtcaag |
23140227 |
T |
|
| Q |
219 |
catgtgagataaatggttataacataccgtttaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactgggctgaaccagagag |
318 |
Q |
| |
|
||||||||||| |||||||| ||||||| ||||||| ||||||| | |||||||| |||||||| || |||||||||||||||||| |||||||||||| |
|
|
| T |
23140226 |
catgtgagatacatggttatcacataccatttaagactaaggtggtcgtcaatgcatgggcaatcgcgagagatccaaactactggactgaaccagagaa |
23140127 |
T |
|
| Q |
319 |
gttttatccagagagattcactgacagcactattgactataaaggggataattttgagtacattccttttggtgc |
393 |
Q |
| |
|
||||||||||||||||||| | | ||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
23140126 |
attttatccagagagattcatgggaaacactattgactataaagggagtgattttgagtacattccttttggtgc |
23140052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 23024652 - 23024278
Alignment:
| Q |
19 |
agattgggcaatggcagaaatgataagggagccaagaataatgaagaaagcacaagctgaggtgagagaggtttttaaattgaatggaagggttgatgaa |
118 |
Q |
| |
|
|||||||||||||||||||||| ||| | | ||||||||||||||||||||||||||||||||| ||||| |||| || |||| ||||||||||| || |
|
|
| T |
23024652 |
agattgggcaatggcagaaatggtaaagaatccaagaataatgaagaaagcacaagctgaggtgcgagagattttcaatatgaaaggaagggttgaagag |
23024553 |
T |
|
| Q |
119 |
aattacattagcaaactcaattatttgaaatcagttgtcaaagaaacccttaggttacacccttcaggacctcttttgctaccaagagaatgtggtaaag |
218 |
Q |
| |
|
|||| || | |||| ||||||||||||||| |||||||||||||||| |||||||||||| | | ||| ||||| |||| |||||||||| | || |
|
|
| T |
23024552 |
aattgtatcaatgaacttaattatttgaaatcaattgtcaaagaaaccctgaggttacaccctccggcaccacttttaataccgagagaatgtgctcaat |
23024453 |
T |
|
| Q |
219 |
catgtgagataaatggttataacataccgtttaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactgggctgaaccagagag |
318 |
Q |
| |
|
||||| ||||| | |||||| |||| || ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| |
|
|
| T |
23024452 |
catgtaagatagacggttatgacattccaactaagactaaggtgatagtcaatgcttgggcaattgcaagagatccaaattactggaccgaaccagagag |
23024353 |
T |
|
| Q |
319 |
gttttatccagagagattcactgacagcactattgactataaaggggataattttgagtacattccttttggtgc |
393 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||||||| ||| |||||||| |||||||||||||| |
|
|
| T |
23024352 |
gttttatccagagagattcatcgatagtgatattgactataaagggagtaactttgagtatattccttttggtgc |
23024278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 192 - 401
Target Start/End: Complemental strand, 22832042 - 22831833
Alignment:
| Q |
192 |
ttttgctaccaagagaatgtggtaaagcatgtgagataaatggttataacataccgtttaagagtaaggtgatagtcaatgcttgggcaattgcaagaga |
291 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||| ||| | ||||| ||||| || || |||||||| ||||||||||| |||| |||||| |
|
|
| T |
22832042 |
ttttgcttccaagagaatgtggaaaagcatgtgagataaatgggtatgatataccttttaaaagcaaagtgatagtgaatgcttgggctattggaagaga |
22831943 |
T |
|
| Q |
292 |
tccaaactactgggctgaaccagagaggttttatccagagagattcactgacagcactattgactataaaggggataattttgagtacattccttttggt |
391 |
Q |
| |
|
|||||| | |||| || ||||| || |||||||| || ||||||| ||| || | | |||||||| || |||||||||||| ||||||||||||| |
|
|
| T |
22831942 |
tccaaatcattgggacgacccagaaagattttatcctgaaagattcattgatagttgtgtggactataagggtaataattttgagttcattccttttggt |
22831843 |
T |
|
| Q |
392 |
gctggaagaa |
401 |
Q |
| |
|
||||| |||| |
|
|
| T |
22831842 |
gctggtagaa |
22831833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 192 - 401
Target Start/End: Original strand, 22941367 - 22941576
Alignment:
| Q |
192 |
ttttgctaccaagagaatgtggtaaagcatgtgagataaatggttataacataccgtttaagagtaaggtgatagtcaatgcttgggcaattgcaagaga |
291 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| |||||||| ||| | ||||| ||||| || || |||||||| ||||||||||| |||| |||||| |
|
|
| T |
22941367 |
ttttgcttccaagagaatgtggacaagcatgtgaaataaatgggtatgatataccttttaaaagcaaagtgatagtgaatgcttgggccattggaagaga |
22941466 |
T |
|
| Q |
292 |
tccaaactactgggctgaaccagagaggttttatccagagagattcactgacagcactattgactataaaggggataattttgagtacattccttttggt |
391 |
Q |
| |
|
|||||| | |||| ||| |||||||| |||||||| || || || | ||| || | | || ||||| || |||||||||||| |||||| |||||| |
|
|
| T |
22941467 |
tccaaatcattgggatgacccagagagattttatcctgaaaggtttattgaaagttgtgtagattataagggaaataattttgagttcattccatttggt |
22941566 |
T |
|
| Q |
392 |
gctggaagaa |
401 |
Q |
| |
|
|||||||||| |
|
|
| T |
22941567 |
gctggaagaa |
22941576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 401
Target Start/End: Complemental strand, 22972134 - 22971949
Alignment:
| Q |
216 |
aagcatgtgagataaatggttataacataccgtttaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactgggctgaaccaga |
315 |
Q |
| |
|
|||| |||||||| |||||||| ||||||| | || |||| ||||||| |||||||||||||||||| ||| |||||||| || ||| |||| ||||| |
|
|
| T |
22972134 |
aagcttgtgagattgatggttatcacataccaatcaaaagtagggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccaga |
22972035 |
T |
|
| Q |
316 |
gaggttttatccagagagattcactgacagcactattgactataaaggggataattttgagtacattccttttggtgctggaagaa |
401 |
Q |
| |
|
| ||||||||| || ||||| | ||| || || |||| | ||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
22972034 |
taagttttatcctgaaagatttattgatagttctcttgatttcaaaggaacaaattttgagtacattccatttggtgctggaagaa |
22971949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 399
Target Start/End: Complemental strand, 22946587 - 22946404
Alignment:
| Q |
216 |
aagcatgtgagataaatggttataacataccgtttaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactgggctgaaccaga |
315 |
Q |
| |
|
||||||||||||| |||||||| ||||||| | || |||| ||||||| |||||||||||||||||| ||| |||||||| || ||| |||| ||||| |
|
|
| T |
22946587 |
aagcatgtgagattgatggttatcacataccaatcaatagtagggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccaga |
22946488 |
T |
|
| Q |
316 |
gaggttttatccagagagattcactgacagcactattgactataaaggggataattttgagtacattccttttggtgctggaag |
399 |
Q |
| |
|
| ||||||||| || ||||| | ||| || || |||| | ||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
22946487 |
taagttttatcctgaaagatttattgatagttctgttgatttcaaaggaacaaattttgagtacattccatttggtgccggaag |
22946404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 327
Target Start/End: Original strand, 22916688 - 22916799
Alignment:
| Q |
216 |
aagcatgtgagataaatggttataacataccgtttaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactgggctgaaccaga |
315 |
Q |
| |
|
|||||||||| |||||||| ||| ||||| ||||| || || |||||||| ||||||||||| |||| |||||||||||| | |||| ||| ||||| |
|
|
| T |
22916688 |
aagcatgtgaaataaatgggtatggtataccatttaaaagcaaagtgatagtgaatgcttgggccattggaagagatccaaataattgggatgatccaga |
22916787 |
T |
|
| Q |
316 |
gaggttttatcc |
327 |
Q |
| |
|
|| |||||||| |
|
|
| T |
22916788 |
aagattttatcc |
22916799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 399
Target Start/End: Complemental strand, 22986309 - 22986277
Alignment:
| Q |
367 |
taattttgagtacattccttttggtgctggaag |
399 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
22986309 |
taattttgagtacattccatttggtgctggaag |
22986277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 21780193 - 21779811
Alignment:
| Q |
19 |
agattgggcaatggcagaaatgataagggagccaagaataatgaagaaagcacaagctgaggtgagagaggtttttaaattgaatggaagggttgatgaa |
118 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| ||| |||||||| ||||| ||| |||| ||||||||||||||| |
|
|
| T |
21780193 |
agattgggcaatggtagaaatggtaagggatccaagaataatgaagaaagcacaagatgaagtgagagaagttttcaaaatgaaaggaagggttgatgaa |
21780094 |
T |
|
| Q |
119 |
aattacattagcaaactcaattatttgaaatcagttgtcaaagaaacccttaggttacacccttcaggacctcttttgctaccaagagaatgtggtaaag |
218 |
Q |
| |
|
|||| ||| | ||||||||||||||||||||||||||||||||||| | ||| |||||||| ||| |||||||||| |||| ||||||||| || ||| |
|
|
| T |
21780093 |
aattgcatcaatgaactcaattatttgaaatcagttgtcaaagaaaccttaaggctacaccctccagcacctcttttgttaccgagagaatgtagtcaag |
21779994 |
T |
|
| Q |
219 |
catgtgagataaatggttataacataccgtttaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactgggctgaaccagagag |
318 |
Q |
| |
|
||||||| ||||||||||| |||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21779993 |
catgtgatataaatggttaccacattccgattaagactaaggtgataatcaatgcttgggcaattgcaagagatccaaactactggactgaaccagagat |
21779894 |
T |
|
| Q |
319 |
gttttatccagagagattcactgacagcactattgactataaaggggataattttgagtacattccttttggtgctggaagaa |
401 |
Q |
| |
|
|||||||||||||||||||| || ||| |||||||| ||||||| |||||||||||||||||| |||||||| ||||||| |
|
|
| T |
21779893 |
gttttatccagagagattcatcgatagcgatattgactttaaagggagtaattttgagtacattccatttggtgccggaagaa |
21779811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 134 - 401
Target Start/End: Original strand, 15885697 - 15885964
Alignment:
| Q |
134 |
ctcaattatttgaaatcagttgtcaaagaaacccttaggttacacccttcaggacctcttttgctaccaagagaatgtggtaaagcatgtgagataaatg |
233 |
Q |
| |
|
|||| ||||||||| |||||||| ||||| ||| | |||||||||||| ||| |||||||| || ||||||||||||| ||||||||||||| ||| |
|
|
| T |
15885697 |
ctcacttatttgaagtcagttgtgaaagagaccttaaggttacaccctccagctcctcttttacttccaagagaatgtgaacaagcatgtgagattgatg |
15885796 |
T |
|
| Q |
234 |
gttataacataccgtttaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactgggctgaaccagagaggttttatccagagag |
333 |
Q |
| |
|
||||| | ||||| || || ||||||||||||||||| ||||| |||| |||||||||||| || ||| |||||||||||||||||||||||||||| |
|
|
| T |
15885797 |
gttatcatataccaaccaaaagcaaggtgatagtcaatgcatgggcgattggaagagatccaaagtattggactgaaccagagaggttttatccagagag |
15885896 |
T |
|
| Q |
334 |
attcactgacagcactattgactataaaggggataattttgagtacattccttttggtgctggaagaa |
401 |
Q |
| |
|
||||| || ||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15885897 |
attcattggtagctctattgactataaagggaataattttgagtacattccttttggttctggaagaa |
15885964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 22 - 401
Target Start/End: Complemental strand, 12610282 - 12609903
Alignment:
| Q |
22 |
ttgggcaatggcagaaatgataagggagccaagaataatgaagaaagcacaagctgaggtgagagaggtttttaaattgaatggaagggttgatgaaaat |
121 |
Q |
| |
|
|||||||||| |||| || ||||||| |||| | |||||||||||||||| |||||| ||||| | || || |||| |||| ||||| |||||| |
|
|
| T |
12610282 |
ttgggcaatgtcagagttggtaagggataaaagagtgatgaagaaagcacaagatgaggtaagagatatattcaacatgaaaggaaatgttgaagaaaat |
12610183 |
T |
|
| Q |
122 |
tacattagcaaactcaattatttgaaatcagttgtcaaagaaacccttaggttacacccttcaggacctcttttgctaccaagagaatgtggtaaagcat |
221 |
Q |
| |
|
| || | |||||| |||||| || |||||||| ||||| ||| | |||||||| ||| |||| |||||||| || |||||||||||||| |||||| |
|
|
| T |
12610182 |
tgtataaatgaactcacttatttaaagtcagttgtgaaagagaccttaaggttacatcctccaggtcctcttttacttccaagagaatgtggacaagcat |
12610083 |
T |
|
| Q |
222 |
gtgagataaatggttataacataccgtttaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactgggctgaaccagagaggtt |
321 |
Q |
| |
|
||||||| |||| ||| ||||| | || || ||||||||||||||||| ||||| |||| |||||||||||| |||||| |||||||||||| ||| |
|
|
| T |
12610082 |
gtgagattgatgggtatcgtataccaatcaaaagcaaggtgatagtcaatgcatgggcgattggaagagatccaaagtactggactgaaccagagaagtt |
12609983 |
T |
|
| Q |
322 |
ttatccagagagattcactgacagcactattgactataaaggggataattttgagtacattccttttggtgctggaagaa |
401 |
Q |
| |
|
|||||| |||||||||| | ||| |||||||||| |||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12609982 |
ttatccggagagattcatcggtagctctattgactacaaagggaataattttgagtacattccctttggtgctggaagaa |
12609903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 254 - 401
Target Start/End: Complemental strand, 12637146 - 12636999
Alignment:
| Q |
254 |
agtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactgggctgaaccagagaggttttatccagagagattcactgacagcactattg |
353 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||| ||||||||||| |||||| ||||||||||||||||| ||||||||||||||| || ||| |||||| |
|
|
| T |
12637146 |
agtaaggtgatagtaaatgcatggacaattggtagagatccaaagtactggactgaaccagagaggtttcatccagagagattcattggtagctctattg |
12637047 |
T |
|
| Q |
354 |
actataaaggggataattttgagtacattccttttggtgctggaagaa |
401 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12637046 |
actacaaaggaaataattttgagtacattccttttggtgcaggaagaa |
12636999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 144 - 398
Target Start/End: Complemental strand, 62408 - 62154
Alignment:
| Q |
144 |
tgaaatcagttgtcaaagaaacccttaggttacacccttcaggacctcttttgctaccaagagaatgtggtaaagcatgtgagataaatggttataacat |
243 |
Q |
| |
|
|||| ||| |||| ||||| ||||| ||||||||||| |||| ||||||| || |||||||||||| | ||||||||||||| |||| ||| | || |
|
|
| T |
62408 |
tgaagtcaattgtgaaagagaccctgaggttacaccccccaggtgctcttttacttccaagagaatgtagagaagcatgtgagattgatgggtatcatat |
62309 |
T |
|
| Q |
244 |
accgtttaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactgggctgaaccagagaggttttatccagagagattcactgac |
343 |
Q |
| |
|
||| | || | ||| ||||||| ||||| |||||||| | ||||||||||| |||||| | ||||||||||||||||||||||||||||||| || |
|
|
| T |
62308 |
accaatgaaaacaaagctgatagttaatgcatgggcaatcggaagagatccaaggtactggacggaaccagagaggttttatccagagagattcattggt |
62209 |
T |
|
| Q |
344 |
agcactattgactataaaggggataattttgagtacattccttttggtgctggaa |
398 |
Q |
| |
|
|| |||||||||| || ||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
62208 |
agttctattgactacaacgggaataatttcgagtacattccttttggtgctggaa |
62154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 62530 - 62465
Alignment:
| Q |
22 |
ttgggcaatggcagaaatgataagggagccaagaataatgaagaaagcacaagctgaggtgagaga |
87 |
Q |
| |
|
||||||||||||||| || |||| || |||||| | |||||||||||||||| ||| |||||||| |
|
|
| T |
62530 |
ttgggcaatggcagagttggtaagagatccaagagtgatgaagaaagcacaagatgaagtgagaga |
62465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 192 - 401
Target Start/End: Original strand, 5594023 - 5594232
Alignment:
| Q |
192 |
ttttgctaccaagagaatgtggtaaagcatgtgagataaatggttataacataccgtttaagagtaaggtgatagtcaatgcttgggcaattgcaagaga |
291 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||| ||| | ||||| ||||| || || |||||||| ||||||||||| |||| |||||| |
|
|
| T |
5594023 |
ttttgcttccaagagaatgtggaaaagcatgtgagataaatgggtatgatataccttttaaaagcaaagtgatagtgaatgcttgggctattggaagaga |
5594122 |
T |
|
| Q |
292 |
tccaaactactgggctgaaccagagaggttttatccagagagattcactgacagcactattgactataaaggggataattttgagtacattccttttggt |
391 |
Q |
| |
|
|||||| | |||| || ||||| || |||||||| || ||||||| ||| || | | |||||||| || |||||||||||| ||||||||||||| |
|
|
| T |
5594123 |
tccaaatcattgggacgacccagaaagattttatcctgaaagattcattgatagttgtgtggactataagggtaataattttgagttcattccttttggt |
5594222 |
T |
|
| Q |
392 |
gctggaagaa |
401 |
Q |
| |
|
||||| |||| |
|
|
| T |
5594223 |
gctggtagaa |
5594232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 23610595 - 23610538
Alignment:
| Q |
21 |
attgggcaatggcagaaatgataagggagccaagaataatgaagaaagcacaagctga |
78 |
Q |
| |
|
||||||||||||| || ||||||| ||| |||||||| ||||||||||||||||||| |
|
|
| T |
23610595 |
attgggcaatggctgagatgataaaggatccaagaattttgaagaaagcacaagctga |
23610538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1750 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1750
Description:
Target: scaffold1750; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 1173 - 1209
Alignment:
| Q |
258 |
aggtgatagtcaatgcttgggcaattgcaagagatcc |
294 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1173 |
aggtaatagtcaatgcttgggcaattgcaagagatcc |
1209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 35650187 - 35650223
Alignment:
| Q |
258 |
aggtgatagtcaatgcttgggcaattgcaagagatcc |
294 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35650187 |
aggtaatagtcaatgcttgggcaattgcaagagatcc |
35650223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 35678267 - 35678300
Alignment:
| Q |
258 |
aggtgatagtcaatgcttgggcaattgcaagaga |
291 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
35678267 |
aggtaatagtcaatgcttgggcaattgcaagaga |
35678300 |
T |
|
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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 366 - 401
Target Start/End: Original strand, 7154500 - 7154535
Alignment:
| Q |
366 |
ataattttgagtacattccttttggtgctggaagaa |
401 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7154500 |
ataattttgagtatattccttttggtgctggaagaa |
7154535 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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