View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4927_low_20 (Length: 209)
Name: NF4927_low_20
Description: NF4927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4927_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 6e-73; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 14819230 - 14819425
Alignment:
| Q |
1 |
acatacaaattaaatggcctattatgaaactttctagttgtctgcatggatgtcattttagcattacctccaagttacaagcggtaaaaacaaatgaagc |
100 |
Q |
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| T |
14819230 |
acatacaaattaaatggcctattgcgaaactttctagttgtctgtatggatgtcattttagaattacctccaagttacaagcggtaaaaacaaatgaagc |
14819329 |
T |
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| Q |
101 |
taaaactatatacatatcttt----aatttcaatgaaagagtacaaacattt-ggcactagaatattcatcatgaatatgatttaacatcaaacat |
191 |
Q |
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| T |
14819330 |
taaaactatatatatatatatcatgaatttcaatgaaagagtacaaacattttggctctagaatattcatcatgaatatgatttaacatcaaacat |
14819425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 61 - 177
Target Start/End: Original strand, 6393678 - 6393796
Alignment:
| Q |
61 |
gcattacctccaagttacaagcggtaaaaacaaatgaagctaaaactatatacatatctttaat-ttcaatgaaagagtacaaacatt-tggcactagaa |
158 |
Q |
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| T |
6393678 |
gcattacctccaagtaccaagcggtaaaaacaaatgaaactaaaaccatatacatatcatgaatgttcaatggaagattacaaacattctggctctaaaa |
6393777 |
T |
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| Q |
159 |
tattcatcatgaatatgat |
177 |
Q |
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| T |
6393778 |
tattcatcatcaatatgat |
6393796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 191
Target Start/End: Complemental strand, 6621690 - 6621585
Alignment:
| Q |
88 |
aaacaaatgaagctaaaactatatacatatctttaat-ttcaatgaaagagtacaaacatt-tggcactagaatattcatcatgaatatgatttaacatc |
185 |
Q |
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||||||||||| |||||| |||||||||||| | ||| ||| |||||||| |||||||||| ||| ||| ||||||||||| ||||||||| | |||| |
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| T |
6621690 |
aaacaaatgaaactaaaattatatacatatcatgaatattctatgaaagattacaaacattctggttctaaaatattcatcaagaatatgatctgacata |
6621591 |
T |
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| Q |
186 |
aaacat |
191 |
Q |
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|||||| |
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| T |
6621590 |
aaacat |
6621585 |
T |
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