View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4927_low_4 (Length: 365)
Name: NF4927_low_4
Description: NF4927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4927_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 28580586 - 28580700
Alignment:
| Q |
8 |
caacaatatctgctgataagggagcaatgtccatgatgtcagcccaactagcaagctcaataggaagcacagaatcacctatcttttcccactcaaaatc |
107 |
Q |
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| T |
28580586 |
caacaatatctgctgataagggagcaatgtccatgatgtcagcccaacttgcaagctcaatgggaagcacagaatcacctatcttttcccactcaagatc |
28580685 |
T |
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| Q |
108 |
atcatcagtatatat |
122 |
Q |
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| T |
28580686 |
atcatcagtatatat |
28580700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 28404125 - 28403843
Alignment:
| Q |
18 |
tgctgataagggagcaatgtccatgatgtcagcccaactagcaagctcaataggaagcacagaatcacctatcttttccca---------ctcaaaatca |
108 |
Q |
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| T |
28404125 |
tgctgataagggagcaatgaccatgatgtcagcccaattagcaagttcaatgtgaagcacagaatcacctatctttttccaatttttccactcagaatcg |
28404026 |
T |
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| Q |
109 |
tcatcagtatatatgtcataactgtgtgtcaacattaatgattctgctttctcattagcaagaaattgcaaacatgtttctgtggcaactgcttttactt |
208 |
Q |
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| T |
28404025 |
tctt---tatatatgtcatgcctgtgtgtgaaca---atgattctgctttctcatgaacaagaaattgcaaagatgtttctgtaacaactgctcttactt |
28403932 |
T |
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| Q |
209 |
cagcccattctaaaaaagtattaacaacaa---cttgttccatagtagctacacctctgcaacaaccaagtagaatccaaggcttcctc |
294 |
Q |
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| T |
28403931 |
ctgcccattctgaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaaccaagtagaattcgaggcttcctc |
28403843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 28585671 - 28585953
Alignment:
| Q |
18 |
tgctgataagggagcaatgtccatgatgtcagcccaactagcaagctcaataggaagcacagaatcacctatcttttccca---------ctcaaaatca |
108 |
Q |
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| T |
28585671 |
tgctgataagggagaaatgaccatgatgtcagcccaattagcaagttcaatgtgaagcacagaatcacctatctttttccaatttttccactcagaatcg |
28585770 |
T |
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| Q |
109 |
tcatcagtatatatgtcataactgtgtgtcaacattaatgattctgctttctcattagcaagaaattgcaaacatgtttctgtggcaactgcttttactt |
208 |
Q |
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|| | |||||||||||| |||||||| |||| |||||||||||||||||| | |||||||||||||| |||||||||| |||||||| |||||| |
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| T |
28585771 |
tctt---tatatatgtcatgcctgtgtgtgaaca---atgattctgctttctcatgaacaagaaattgcaaagatgtttctgtaacaactgctcttactt |
28585864 |
T |
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| Q |
209 |
cagcccattctaaaaaagtattaacaacaa---cttgttccatagtagctacacctctgcaacaaccaagtagaatccaaggcttcctc |
294 |
Q |
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| T |
28585865 |
ctgcccattctgaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaaccaagtagaattcgaggcttcctc |
28585953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 28417673 - 28417597
Alignment:
| Q |
18 |
tgctgataagggagcaatgtccatgatgtcagcccaactagcaagctcaataggaagcacagaatcacctatctttt |
94 |
Q |
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| T |
28417673 |
tgctgataagggagcaatgacgatgatatcagcccacttagcaagctcaatgtgaagcacagaatcacctatctttt |
28417597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 28417550 - 28417478
Alignment:
| Q |
147 |
tgattctgctttctcattagcaagaaattgcaaacatgtttctgtggcaactgcttttacttcagcccattct |
219 |
Q |
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| T |
28417550 |
tgattctgctttctcattagcaagaaattgtaaagctgtttttgtgacaacagcttttacttctgcccattct |
28417478 |
T |
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