View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4927_low_6 (Length: 351)
Name: NF4927_low_6
Description: NF4927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4927_low_6 |
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| [»] scaffold0274 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 4520405 - 4520732
Alignment:
| Q |
1 |
atacttacaccattatgcataaactcagtctacacaggtgtagaaaaattgaaaacagagaaagtaacgacagtaaaacagagaaagttgtgcacaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4520405 |
atacttacaccattatgcataaactcagtctacacaggtgtagaaaaattgaaaacagagaaagtaacgacagtaaaacagagaaagttgtgcacaaata |
4520504 |
T |
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| Q |
101 |
cagtttagtatgaacaccacctccccattcgatatgagttgttggacagatggggatttctgcatnnnnnnngatgccttctacgtcttgcagatgggaa |
200 |
Q |
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| T |
4520505 |
cagtttagtatgaacaccacctccccattcgatatgagttgttggacagatggggatttctgcatccccccggatgccttctacgtcttgcagatgggaa |
4520604 |
T |
|
| Q |
201 |
tattctcttaaccttcaataaaagggaacaatgactagcaaggaaggcacgaagaaaattgaagaaattaaaagtctccttctccctttggtactcttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| || |
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| T |
4520605 |
tattctcttaaccttcaataaaagggaacaatgactagcaaggaaggcacgaagaaaactgaagaaattaaaagtctccttcttcctttggtactctcct |
4520704 |
T |
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| Q |
301 |
tcagagtaatgacttaagtctttgaact |
328 |
Q |
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| ||| |||||||||||||||||||||| |
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| T |
4520705 |
tgagaataatgacttaagtctttgaact |
4520732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 323
Target Start/End: Complemental strand, 5465 - 5346
Alignment:
| Q |
199 |
aatattctcttaaccttcaataaaagggaacaatgactagcaaggaa-ggcacgaagaaaattgaagaaattaaaagtctccttctccctttggtactct |
297 |
Q |
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| T |
5465 |
aatattctcttaaccttctataaaagggaccaatga-tgggaagcaaaggcatgaagattattgaagaaa-----agtctccatctccctttggtactct |
5372 |
T |
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| Q |
298 |
tcttcagagtaatgacttaagtcttt |
323 |
Q |
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| T |
5371 |
ccttgagagtaatggcttaggtcttt |
5346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 323
Target Start/End: Original strand, 3825 - 3944
Alignment:
| Q |
199 |
aatattctcttaaccttcaataaaagggaacaatgactagcaaggaa-ggcacgaagaaaattgaagaaattaaaagtctccttctccctttggtactct |
297 |
Q |
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| T |
3825 |
aatattctcttaaccttctataaaagggaccaatga-tgggaagcaaaggcatgaagattattgaagaaa-----agtctccatctccctttggtactct |
3918 |
T |
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| Q |
298 |
tcttcagagtaatgacttaagtcttt |
323 |
Q |
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||| ||||||||| |||| |||||| |
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| T |
3919 |
ccttgagagtaatggcttaggtcttt |
3944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 39773327 - 39773380
Alignment:
| Q |
270 |
aaaagtctccttctccctttggtactcttcttcagagtaatgacttaagtcttt |
323 |
Q |
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||||||||| |||||||||||||||||| ||| ||||||||| |||| |||||| |
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| T |
39773327 |
aaaagtctctttctccctttggtactctccttgagagtaatggcttaggtcttt |
39773380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 29346851 - 29346807
Alignment:
| Q |
280 |
ttctccctttggtactcttcttcagagtaatgacttaagtctttg |
324 |
Q |
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| T |
29346851 |
ttctccctttggtactctctttgagggtaatgacttaagtctttg |
29346807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 32471205 - 32471157
Alignment:
| Q |
281 |
tctccctttggtactcttcttcagagtaatgacttaagtctttgaactt |
329 |
Q |
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| T |
32471205 |
tctccctttggtactctccttgcgagtaataacttatgtctttgaactt |
32471157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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