View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928-Insertion-11 (Length: 626)

Name: NF4928-Insertion-11
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928-Insertion-11
NF4928-Insertion-11
[»] chr8 (16 HSPs)
chr8 (97-503)||(33373055-33373461)
chr8 (97-505)||(45093298-45093707)
chr8 (101-478)||(42000138-42000513)
chr8 (97-479)||(9216080-9216463)
chr8 (217-504)||(35808180-35808468)
chr8 (212-504)||(14342785-14343077)
chr8 (371-505)||(31512240-31512376)
chr8 (571-625)||(38712129-38712183)
chr8 (418-505)||(44145977-44146064)
chr8 (571-625)||(32493091-32493145)
chr8 (402-478)||(14770165-14770240)
chr8 (403-502)||(14809635-14809735)
chr8 (571-626)||(1916485-1916540)
chr8 (97-155)||(14343098-14343156)
chr8 (415-473)||(38560489-38560547)
chr8 (298-354)||(38560607-38560663)
[»] chr4 (12 HSPs)
chr4 (97-505)||(28945210-28945618)
chr4 (97-488)||(1369291-1369682)
chr4 (97-505)||(44307381-44307790)
chr4 (219-488)||(1217139-1217407)
chr4 (97-505)||(36858648-36859058)
chr4 (7-99)||(7362412-7362504)
chr4 (514-626)||(7362261-7362377)
chr4 (172-430)||(44072965-44073208)
chr4 (298-505)||(4228325-4228531)
chr4 (415-505)||(47597429-47597519)
chr4 (571-625)||(8132934-8132988)
chr4 (417-461)||(24246282-24246326)
[»] chr7 (19 HSPs)
chr7 (97-488)||(38110533-38110924)
chr7 (97-505)||(46045764-46046176)
chr7 (97-505)||(8035568-8035977)
chr7 (97-478)||(45033547-45033928)
chr7 (163-505)||(5349917-5350258)
chr7 (339-500)||(5791306-5791467)
chr7 (203-502)||(3782319-3782614)
chr7 (189-429)||(2037609-2037844)
chr7 (330-479)||(7431679-7431827)
chr7 (415-505)||(24468770-24468860)
chr7 (415-505)||(24473718-24473808)
chr7 (448-488)||(22938817-22938857)
chr7 (571-626)||(34191809-34191864)
chr7 (571-626)||(5419035-5419090)
chr7 (571-624)||(10992622-10992675)
chr7 (571-624)||(34259180-34259233)
chr7 (417-504)||(8019584-8019672)
chr7 (298-353)||(24468654-24468709)
chr7 (298-353)||(24473602-24473657)
[»] chr5 (11 HSPs)
chr5 (97-488)||(14024792-14025183)
chr5 (97-503)||(32386345-32386752)
chr5 (258-484)||(239834-240059)
chr5 (268-469)||(30046625-30046825)
chr5 (415-505)||(18934323-18934413)
chr5 (570-608)||(13957089-13957127)
chr5 (571-626)||(32383794-32383849)
chr5 (415-505)||(4560155-4560245)
chr5 (571-624)||(6459851-6459904)
chr5 (298-353)||(18934207-18934262)
chr5 (570-608)||(33112112-33112150)
[»] chr1 (17 HSPs)
chr1 (97-488)||(6293873-6294264)
chr1 (97-505)||(16854806-16855211)
chr1 (101-505)||(28705852-28706258)
chr1 (229-479)||(39476050-39476299)
chr1 (97-500)||(5555858-5556262)
chr1 (371-488)||(38168197-38168314)
chr1 (415-505)||(22065040-22065130)
chr1 (571-625)||(24638842-24638896)
chr1 (571-608)||(962401-962438)
chr1 (570-626)||(3014077-3014133)
chr1 (570-626)||(3794287-3794343)
chr1 (433-503)||(5308930-5309001)
chr1 (165-302)||(26370734-26370869)
chr1 (415-473)||(11531505-11531563)
chr1 (298-351)||(22065193-22065246)
chr1 (573-626)||(40960120-40960173)
chr1 (419-479)||(30902166-30902226)
[»] chr2 (14 HSPs)
chr2 (97-488)||(42865774-42866165)
chr2 (97-505)||(24126256-24126665)
chr2 (97-505)||(11995574-11995985)
chr2 (197-501)||(40614893-40615189)
chr2 (275-431)||(17526665-17526820)
chr2 (415-505)||(17290299-17290389)
chr2 (417-505)||(13187159-13187248)
chr2 (460-505)||(24125985-24126031)
chr2 (570-626)||(16106550-16106606)
chr2 (571-618)||(6065417-6065464)
chr2 (583-626)||(16106633-16106676)
chr2 (436-505)||(7304956-7305025)
chr2 (571-624)||(29781560-29781613)
chr2 (417-505)||(40426005-40426094)
[»] chr3 (22 HSPs)
chr3 (117-504)||(37502966-37503355)
chr3 (101-505)||(1182349-1182776)
chr3 (274-505)||(25905846-25906069)
chr3 (97-291)||(43328757-43328951)
chr3 (122-478)||(30775576-30775929)
chr3 (278-469)||(3461459-3461650)
chr3 (97-371)||(41420450-41420726)
chr3 (415-505)||(46428826-46428916)
chr3 (415-505)||(54812087-54812177)
chr3 (394-455)||(43329060-43329121)
chr3 (415-505)||(42794756-42794846)
chr3 (570-625)||(40918324-40918379)
chr3 (570-608)||(42907928-42907966)
chr3 (573-626)||(29727879-29727932)
chr3 (455-502)||(43329125-43329173)
chr3 (574-625)||(35054618-35054669)
chr3 (416-500)||(43912096-43912180)
chr3 (571-626)||(51537095-51537150)
chr3 (298-353)||(54812238-54812293)
chr3 (570-608)||(53351314-53351352)
chr3 (164-227)||(27156283-27156347)
chr3 (412-500)||(36275929-36276016)
[»] chr6 (3 HSPs)
chr6 (415-505)||(1222819-1222909)
chr6 (571-626)||(23595833-23595888)
chr6 (417-474)||(20679009-20679066)
[»] scaffold0712 (1 HSPs)
scaffold0712 (572-626)||(4835-4889)
[»] scaffold0709 (1 HSPs)
scaffold0709 (572-626)||(4855-4909)


Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 97 - 503
Target Start/End: Original strand, 33373055 - 33373461
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||  | |||||||||||||||||||||||||||||||||    
T  33373055 atgcttttcatgctgaaatgtggggcatgtacctaggtttggacatggcgtggagggagaatacaactcatcttatagtggagagtgactcaaagatctt 33373154  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 295  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33373155 ggtcgacatgattactgaaaattgcaattttagtggaacaactcctactttggttaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 33373254  T
Q  296 acccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttct 395  Q
    ||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||    
T  33373255 acccatacttggcgggaaggcaacaaaagtgcagattggattgctaatttcagcatttcgacggattttctaga-ttttcatattctggagactcctcct 33373353  T
Q  396 agtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctttgccct 495  Q
    ||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33373354 agtgagcttcagagtcttttgtttgatgatatttccggagcttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctttgccct 33373453  T
Q  496 cttttgta 503  Q
    ||||||||    
T  33373454 cttttgta 33373461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 97 - 505
Target Start/End: Original strand, 45093298 - 45093707
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||  | ||||||||||||||| |||||||||||||||||    
T  45093298 atgcttttcatgctgaaatgtggggcatgtacctaggtttggacatggcgtggagggagaataccactcatcttatagtggatagtgactcaaagatctt 45093397  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 295  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45093398 ggtcgacatgattactgaaaattgcaattttagtggaacgactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 45093497  T
Q  296 acccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttct 395  Q
    |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| || |||||||||||| ||||||||||||| |||||||  ||    
T  45093498 acccatacttggcgtgaaggcaacagaagtgcagattggcttgcaaatttcagcatttcgatggattttctaga-ttttcatattctgaagactccccct 45093596  T
Q  396 agtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttc-tttcctttgggctttgccc 494  Q
    ||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  45093597 agtgagcttcagagtcttttgtttgatgatatttccggggcttgcatgcctaggaacgtccgtttaatttcttagttttctttttctttgggctttgccc 45093696  T
Q  495 tcttttgtacc 505  Q
    |||||||||||    
T  45093697 tcttttgtacc 45093707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 101 - 478
Target Start/End: Original strand, 42000138 - 42000513
Alignment:
Q  101 ttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatcttg-tc 199  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||  | | ||||||||||||||  |||||||||||||||| ||    
T  42000138 ttttcatgctgaaatgtggggcatgtacctaggtttggacatggcgtggagggagaataccactaatcttatagtggag--tgactcaaagatcttggtc 42000235  T
Q  200 gacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattaccc 299  Q
    |||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42000236 gacaagattactgaaaattgcaattttagtggaacggctcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattaccc 42000335  T
Q  300 atacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttctagtg 399  Q
    |||||||||| |||||||||| |||| ||||||||||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||   ||||||    
T  42000336 atacttggcgtgaaggcaacaaaagtgcagattggcttgctaatttcagcatttcgatggaatttctaga-ttttcatattctggagactctccctagtg 42000434  T
Q  400 aacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttcttt 478  Q
    | ||||| |||||||||||||||||||||| |||| ||||||||| |||||| || |||||||||||||||||||||||    
T  42000435 agcttcaaagtcttttgtttgatgatatttccggggcttgcatgcataggaatgttcgtttaatttcttagttttcttt 42000513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 97 - 479
Target Start/End: Original strand, 9216080 - 9216463
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    ||||||||||| ||||||| || |  |||||||||||| ||||||||  |||||||||| | |  | | |||||||||| ||||||||||||||||| ||    
T  9216080 atgcttttcatactgaaatgtgagatatgtacctaggtctggacatggtgtggagggagaacaccacttatcttatagtagagagtgactcaaagatttt 9216179  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 295  Q
    | |||||||||||| |||||||||||||||||||||||| |||||||||||||||||  ||||| || | ||||||||||||||||||| ||||||||||    
T  9216180 ggtcgacatgattaatgaaaattgcaattttagtggaacgactcctactttggtcagatgtatttgaaagcttttgagtttgagttggaatgtcaaaatt 9216279  T
Q  296 acccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattc-tggagactccttc 394  Q
    || ||||||||  | |||||||||| |||| || |||||||| |||||||||||| || || ||||||| |||| ||||||||||| ||||||||||  |    
T  9216280 acgcatacttgatgtgaaggcaacaaaagtgcaaattggcttcctaatttcagcacttcgatggattttttaga-ttttcatattcttggagactccccc 9216378  T
Q  395 tagtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttc 479  Q
    |||||| ||||||||| ||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||    
T  9216379 tagtgagcttcagagttttttgtttgttgatattttcgggacttacatgcataggaacgtccgtttaatttattagttttctttc 9216463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 217 - 504
Target Start/End: Original strand, 35808180 - 35808468
Alignment:
Q  217 ttgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgggaaggc 316  Q
    |||||||||| ||||||| |||||||| ||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  35808180 ttgcaattttggtggaacgactcctaccttggtcaagcgtattcgacagcttttgagtttgagttggacggtcaaaattacccatacttggcgtgaaggc 35808279  T
Q  317 aacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttctagtgaacttcagagtcttttg 416  Q
    ||||||||| |||||||||||||||||| || ||||| || ||||| |||||| | |||||||| |||||| |||  ||||||| |||||||||||||||    
T  35808280 aacagaagtgcagattggcttgctaattacaacatttcgatggattctctaga-tcttcatattatggagaatccccctagtgagcttcagagtcttttg 35808378  T
Q  417 tttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttc-ctttgggctttg-ccctcttttgtac 504  Q
    |||||| |||||| |||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| |||||||||||||    
T  35808379 tttgattatatttccggggcttgcatgcctaggaacgtccttttaatttcttagttttctttctctttgggttttgaccctcttttgtac 35808468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 212 - 504
Target Start/End: Complemental strand, 14343077 - 14342785
Alignment:
Q  212 gaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcggg 311  Q
    |||||||||||||||||||| |||||||||||| || |   |||||||||| ||||||||| |||||| | ||| | ||||||||  ||||||||||| |    
T  14343077 gaaaattgcaattttagtgggacaactcctactctgattttgcgtattcgaaaacttttgaatttgagctagacagacaaaattattcatacttggcgtg 14342978  T
Q  312 aaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttctagtgaacttcagagtc 411  Q
    || |||||| |||  ||| ||| |||| |||||||| |||||  | | |||||||||||||| ||||||||| ||||||   ||| ||| ||||||||||    
T  14342977 aatgcaacataagcgcagtttgacttggtaatttcaacatttcaatgaattttctagatttt-catattctgaagactctccctaatgagcttcagagtc 14342879  T
Q  412 ttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttcttt--cctttgggctttgccctcttttgtac 504  Q
    ||| |||||||||||||||||||||||||||| ||| |||||||  ||||||||| |  |||| |||   |||||| || |||||||||||||||    
T  14342878 ttt-gtttgatgatattttcgggacttgcatgtctaagaacgtctctttaatttcgttcttttattttctctttggactatgccctcttttgtac 14342785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 371 - 505
Target Start/End: Complemental strand, 31512376 - 31512240
Alignment:
Q  371 ttttcatattctggagactccttctagtgaacttcagagtcttttgtttgatgata-ttttcgggacttgcatgcctaggaacgtccgtttaatttctta 469  Q
    ||||||||||||| |||||||  ||||||| ||||||| ||||||||||||||||| |||||||| ||||||| |||| |||||||||||||||||||||    
T  31512376 ttttcatattctgaagactccccctagtgagcttcagaatcttttgtttgatgatatttttcggggcttgcatacctaagaacgtccgtttaatttctta 31512277  T
Q  470 gttttc-tttcctttgggctttgccctcttttgtacc 505  Q
     ||||| ||| |||||  |||||||||||||||||||    
T  31512276 attttctttttctttgaactttgccctcttttgtacc 31512240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 571 - 625
Target Start/End: Original strand, 38712129 - 38712183
Alignment:
Q  571 cgagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaatc 625  Q
    ||||||||||||||||||||||||||||||||||||||  ||| |||||||||||    
T  38712129 cgagtcatcggttcaatccgatttaatctagttaaatacatataaaaatttaatc 38712183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 418 - 505
Target Start/End: Original strand, 44145977 - 44146064
Alignment:
Q  418 ttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctttgccctcttttgtacc 505  Q
    ||||||||||||||||| ||||||||||||  || ||||| |||||||| || |||  ||||  |||||||||||||||| |||||||    
T  44145977 ttgatgatattttcggggcttgcatgcctaaaaatgtccggttaatttcgtaatttcttttctcttgggctttgccctctattgtacc 44146064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 571 - 625
Target Start/End: Original strand, 32493091 - 32493145
Alignment:
Q  571 cgagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaatc 625  Q
    |||||||| |||||||||||||||||||||||||||||   || |||||||||||    
T  32493091 cgagtcatgggttcaatccgatttaatctagttaaatacacataaaaatttaatc 32493145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 478
Target Start/End: Original strand, 14770165 - 14770240
Alignment:
Q  402 cttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttcttt 478  Q
    ||||| ||||||||||||||||| ||||||| | ||| |||| |||| |||||  ||||||||| ||||||||||||    
T  14770165 cttcaaagtcttttgtttgatgacattttcgtgtcttacatg-ctagaaacgtatgtttaatttgttagttttcttt 14770240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 502
Target Start/End: Original strand, 14809635 - 14809735
Alignment:
Q  403 ttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttc-ctttgggctttgccctcttttg 501  Q
    |||| ||||||||||||||||| ||||| |   |||| ||| |||| |||||  ||||||||| ||||||||||||| |||| | ||||||| |||||||    
T  14809635 ttcaaagtcttttgtttgatgacatttttgaatcttgaatgtctagaaacgttagtttaatttgttagttttctttctctttcgactttgccatcttttg 14809734  T
Q  502 t 502  Q
    |    
T  14809735 t 14809735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 571 - 626
Target Start/End: Complemental strand, 1916540 - 1916485
Alignment:
Q  571 cgagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaatct 626  Q
    ||||||| ||||||||| |||||||||||  ||||||||||||  |||||||||||    
T  1916540 cgagtcaccggttcaattcgatttaatctgattaaatatctatacaaatttaatct 1916485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 14343156 - 14343098
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggag 155  Q
    |||||||||||||  |||| ||||||||||| || |||||||||||| | |||||||||    
T  14343156 atgcttttcatgccaaaatgtggggcatgtatcttggtttggacatggcatggagggag 14343098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 473
Target Start/End: Complemental strand, 38560547 - 38560489
Alignment:
Q  415 tgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttt 473  Q
    ||||||||||||||| |||||||||||||||||  ||  |||| |||||||| ||||||    
T  38560547 tgtttgatgatatttccgggacttgcatgcctatcaatatccggttaatttcgtagttt 38560489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 38560663 - 38560607
Alignment:
Q  298 ccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcatttt 354  Q
    |||||||||||  ||||| || |||||| | ||||||||||||||||| ||||||||    
T  38560663 ccatacttggcacgaaggaaatagaagtgccgattggcttgctaattttagcatttt 38560607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 97 - 505
Target Start/End: Complemental strand, 28945618 - 28945210
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| |||  | |||||||||||||||||||||||||||||| ||    
T  28945618 atgcttttcatgctgaaatgtggggcatgtaccttggtttggacatggcgtggagggagaataccactcatcttatagtggagagtgactcaaagatttt 28945519  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 295  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28945518 ggtcgacatgattactgaaaattgcaattttagtggaactactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 28945419  T
Q  296 acccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttct 395  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||| ||||||||| ||    
T  28945418 acccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcgacggattttttaga-ttttcatattctagagactcctcct 28945320  T
Q  396 agtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctttgccct 495  Q
    ||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28945319 agtgagcttcaaagtcttttgtttgatgatattttcgggacttacatgcctaggaacgtccgtttaatttcttagttttctttcctttaggctttgccct 28945220  T
Q  496 cttttgtacc 505  Q
    ||||||||||    
T  28945219 cttttgtacc 28945210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 97 - 488
Target Start/End: Original strand, 1369291 - 1369682
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| |||  | |||||||||||||||||||||||||||||| ||    
T  1369291 atgcttttcatgctgaaatgtggggcatgtaccttggtttggacatggcgtggagggagaataccactcatcttatagtggagagtgactcaaagatttt 1369390  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 295  Q
    | |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1369391 ggtcgacatgattactgaaaattgcaattttagtagaactactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 1369490  T
Q  296 acccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttct 395  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| ||    
T  1369491 acccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcgacggattttctaga-ttttcatattcttgagactcctcct 1369589  T
Q  396 agtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggct 488  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1369590 agtgagcttcagagtcttttgtttgatgatatttccggaacttgcatgcctaggaacgtccatttaatttcttagttttctttcctttgggct 1369682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 97 - 505
Target Start/End: Original strand, 44307381 - 44307790
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||  | |||| ||||||||||||||||||||||||||||    
T  44307381 atgcttttcatgctgaaatgtggggcatgtacctaggtttggacatggcgtggagggagaataccactcatattatagtggagagtgactcaaagatctt 44307480  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 295  Q
    | |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  44307481 ggtcgatatgattactgaaaattgcaattttagtggaacgactcctactttggtcgggcgtattcgacaacttttgagtttgagttggattgtcaaaatt 44307580  T
Q  296 acccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttct 395  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||  ||    
T  44307581 acccatacttggcgtgaaggcaacagaagtgcagattggcttgctaatttcagcatttcgatggattttctaga-ttttcatattctggagactccccct 44307679  T
Q  396 agtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttc-tttcctttgggctttgccc 494  Q
    ||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| ||| ||||| |||||||||    
T  44307680 agtgagcttcagagtcttttggttgatgatattatcggggcttgcatgcctaggaacgttcgtttaatttcttagttttctttttctttgtgctttgccc 44307779  T
Q  495 tcttttgtacc 505  Q
    |||||||||||    
T  44307780 tcttttgtacc 44307790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 219 - 488
Target Start/End: Original strand, 1217139 - 1217407
Alignment:
Q  219 gcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgggaaggcaa 318  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1217139 gcaattttagtggaactactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgggaaggcaa 1217238  T
Q  319 cagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttctagtgaacttcagagtcttttgtt 418  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||| ||||||| |||||||||||||||||    
T  1217239 cagaagtgcagattggcttgctaatttcagcatttcgacggattttttaga-ttttcatattctggagactcctcctagtgagcttcagagtcttttgtt 1217337  T
Q  419 tgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggct 488  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1217338 tgatgatatttccggggcttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggct 1217407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 97 - 505
Target Start/End: Complemental strand, 36859058 - 36858648
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    ||||||||||||||||||| |||||||||||||||||||||||| || ||||||||| | |||  | |||||| | ||||||||||||||||||||| ||    
T  36859058 atgcttttcatgctgaaatgtggggcatgtacctaggtttggacttggcgtggagggggaataccactcatctcacagtggagagtgactcaaagatttt 36858959  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 295  Q
    | |||| |||||||||||||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| ||| |||||||||    
T  36858958 ggtcgatatgattactgaaaattgcaattttggtggaacgactcctaccttggtcaagcgtattcgacaacttttgagtttgagttagacggtcaaaatt 36858859  T
Q  296 acccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttct 395  Q
    ||||||||| |||  |||||||||| |||| || |||| ||| |||||| |||||||| || ||||| |||||| | ||||||||||||||| |||  ||    
T  36858858 acccatactaggcatgaaggcaacaaaagtgcaaattgacttactaattacagcatttcgatggattctctaga-tcttcatattctggagaatccccct 36858760  T
Q  396 agtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttc-ctttgggcttt-gcc 493  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||| |||||| |||| |||    
T  36858759 agtgagcttcagagtcttttgtttgatgatatttccgggacttgcatgcgtaggaacgtccttttaatttcttagttttctttctctttggcctttggcc 36858660  T
Q  494 ctcttttgtacc 505  Q
    ||||||||||||    
T  36858659 ctcttttgtacc 36858648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 7362504 - 7362412
Alignment:
Q  7 accatgatcatcaaagtgaaacaatcgaaaatggaaacttaacaaccacaccagccacttctttatgtcaacaagtacattataatatatatg 99  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7362504 accatgatcatcaaagtgaaacaatggaaaatggaaacataacaaccacaccagccacttctttatgtcaacaagtacattataatatatatg 7362412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 514 - 626
Target Start/End: Complemental strand, 7362377 - 7362261
Alignment:
Q  514 gatcacacggtgtttttgtttttc---aaaaatagcacat-attattaaaatattgagtctc-gagtcatcggttcaatccgatttaatctagttaaata 608  Q
    |||||||| |||||||| ||||||   ||||||||||||| ||||||||| ||||||||  | |||||||||||||||||||||||||||| ||||||||    
T  7362377 gatcacaccgtgtttttttttttcttcaaaaatagcacatcattattaaa-tattgagtggccgagtcatcggttcaatccgatttaatctggttaaata 7362279  T
Q  609 tctattaaaatttaatct 626  Q
    |||||| |||||||||||    
T  7362278 tctattgaaatttaatct 7362261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 172 - 430
Target Start/End: Complemental strand, 44073208 - 44072965
Alignment:
Q  172 tagtggagagtgactcaaagatcttg-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaactttt 270  Q
    ||||||||| |||||||||||||||| || | ||||||| ||||||||| || ||||||| |||  |||||| |||| | ||  |||||| | | |||||    
T  44073208 tagtggagactgactcaaagatcttggtcaatatgattattgaaaattgtaaatttagtgtaacggctcctattttgattagatgtattcaaaagctttt 44073109  T
Q  271 gagtttgagttggactgtcaaaattacccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagat 370  Q
    |||||||||||||   ||||||||||| ||||||||| | ||||      | ||| ||||||||||||||||||||| ||||| ||         ||||     
T  44073108 gagtttgagttgggtagtcaaaattactcatacttggtgtgaag------gtagtgcagattggcttgctaatttcaacatttcga---------taga- 44073025  T
Q  371 ttttcatattctggagactccttctagtgaacttcagagtcttttgtttgatgatatttt 430  Q
    |||||||||| | ||||||| | ||| |||||||||||||||||||||| ||| ||||||    
T  44073024 ttttcatattttagagactcttcctaatgaacttcagagtcttttgtttaatgctatttt 44072965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 298 - 505
Target Start/End: Original strand, 4228325 - 4228531
Alignment:
Q  298 ccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttctag 397  Q
    |||||||||||| ||||| || |||||| | ||||||||||||||||| |||||||    | ||| | | || |||   |||| ||||||||||| |||     
T  4228325 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaattattt-gaatttgattattttggagactcctcctat 4228423  T
Q  398 tgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctttgccctct 497  Q
    ||| ||||  |  ||  ||||||||||||||| |||| |||||||||||| |||  |||| |||||||| ||||||  |||| |||| ||||||||||||    
T  4228424 tgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaagaatatccggttaatttcgtagtttcttttcttttgagctttgccctct 4228523  T
Q  498 tttgtacc 505  Q
     |||||||    
T  4228524 attgtacc 4228531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 415 - 505
Target Start/End: Complemental strand, 47597519 - 47597429
Alignment:
Q  415 tgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctttgccctcttttgtacc 505  Q
    |||||||| |||||| || | |||||||||||| ||| ||||| |||||||| ||||||  ||||  |||| |||||||||||||||||||    
T  47597519 tgtttgattatatttccgaggcttgcatgcctaagaatgtccggttaatttcgtagtttcttttctcttggactttgccctcttttgtacc 47597429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 625
Target Start/End: Complemental strand, 8132988 - 8132934
Alignment:
Q  571 cgagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaatc 625  Q
    |||||||| |||||||| ||||||||| | | ||||||||||| |||||||||||    
T  8132988 cgagtcattggttcaattcgatttaatatggataaatatctataaaaatttaatc 8132934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 24246326 - 24246282
Alignment:
Q  417 tttgatgatattttcgggacttgcatgcctaggaacgtccgttta 461  Q
    |||||||||||||||||| |||||||| ||||||| || ||||||    
T  24246326 tttgatgatattttcggggcttgcatgtctaggaatgttcgttta 24246282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 97 - 488
Target Start/End: Complemental strand, 38110924 - 38110533
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||  | |||||||||||||||||||||||||||||| ||    
T  38110924 atgcttttcatgctgaaatatggggcatgtacctaggtttgaacatggcgtggagggagaataccactcatcttatagtggagagtgactcaaagatatt 38110825  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 295  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38110824 ggtcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 38110725  T
Q  296 acccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttct 395  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||  ||    
T  38110724 acccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcgacggattttctaga-ttttcatattctggagactccacct 38110626  T
Q  396 agtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggct 488  Q
    ||||| ||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38110625 agtgagcttcagagtcttttgtttgatgatatttctggggcttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggct 38110533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 97 - 505
Target Start/End: Original strand, 46045764 - 46046176
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| |||  | |||||||||||||||||||||||||||||| ||    
T  46045764 atgcttttcatgctgaaatgtggggcatgtaccttggtttggacatggcgtggagggagaataccactcatcttatagtggagagtgactcaaagatttt 46045863  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 295  Q
    | ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  46045864 ggtcgacatgattactgaaaattgcaattttagcggaactactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaact 46045963  T
Q  296 acccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttct 395  Q
    || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||    
T  46045964 acacatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcgacggattttctaga-ttttcatattctggagactcctcct 46046062  T
Q  396 agtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggcttt----g 491  Q
    ||||| |||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    |    
T  46046063 agtgagcttcagagtcttttgtttgatgatatttccggggcttgcatgtctaggaacgtccgtttaatttcttagttttctttcctttgggctttgagag 46046162  T
Q  492 ccctcttttgtacc 505  Q
    ||||||||||||||    
T  46046163 ccctcttttgtacc 46046176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 97 - 505
Target Start/End: Original strand, 8035568 - 8035977
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  8035568 atgcttttcatgctgaaatgtggggcatgtacctaggtttggacatggtgtggagggagaataccattcatcttatagtggagagtgactcaaagatctt 8035667  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 295  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8035668 ggtcgacatgattactgaaaattgcaattttagtggaacgactcctactttggtcagacgtattcgacaacttttgagtttgagttggactgtcaaaatt 8035767  T
Q  296 acccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttct 395  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||  ||    
T  8035768 acccatacttggcgtgaaggcaacagaagtgcagattggcttgctaatttcagcatttcgatggattttctaga-ttttcatattctggagactccccct 8035866  T
Q  396 agtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttc-tttcctttgggctttgccc 494  Q
    ||| | |||||||||||||||||||||||||||| |||| ||||||||||||| |||||| ||||||||||||||||||| ||| ||||| |||||||||    
T  8035867 agttagcttcagagtcttttgtttgatgatatttccggggcttgcatgcctagaaacgtcagtttaatttcttagttttctttttctttgagctttgccc 8035966  T
Q  495 tcttttgtacc 505  Q
    |||||||||||    
T  8035967 tcttttgtacc 8035977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 97 - 478
Target Start/End: Complemental strand, 45033928 - 45033547
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| ||  |||  | | ||||||||||||||||||||||||| |||||    
T  45033928 atgcttttcatgctgaaatgtggggcatgtacctaggtttggacatggcatggagagaaaataccacttatcttatagtggagagtgactcaaatatctt 45033829  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 295  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  45033828 ggtcgacatgattactgaaaattgcaattttagtggaacgactcctactttagtcacgcgtattcgacaacttttgagtttgagttggactgtcaaaatt 45033729  T
Q  296 acccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttct 395  Q
    ||||||| |||||  |||| ||||| |||| ||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||  ||    
T  45033728 acccatatttggcttgaagacaacataagtgcagattggcttgctaatttcagcatttcgatggattttctaga-ttttcatattctggagactccccct 45033630  T
Q  396 agtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttcttt 478  Q
    | |||| ||||||||||||||||||||||||||| |||  ||| |||||| |||||| |||||||||||| ||||||||||||    
T  45033629 aatgaatttcagagtcttttgtttgatgatatttccggagcttacatgcccaggaacatccgtttaattttttagttttcttt 45033547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 163 - 505
Target Start/End: Original strand, 5349917 - 5350258
Alignment:
Q  163 ttcatcttatagtggagagtgactcaaagatcttg-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcg 261  Q
    ||||||||| |||||||| |||||||||||||||| |||||||||||||| ||||||| |||||||||||||| |||||||||||||| |||| ||| ||    
T  5349917 ttcatcttacagtggagaatgactcaaagatcttggtcgacatgattactaaaaattgaaattttagtggaacgactcctactttggttaggcctatacg 5350016  T
Q  262 acaacttttgagtttgagttggactgtcaaaattacccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggat 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||| || ||||    
T  5350017 acaacttttgagtttgagttggactgtcaaaattacccatacttggcgtgaaggcaacaaaagtgcagattggcttgctaatttcagcatttcgatggat 5350116  T
Q  362 tttctagatttttcatattctggagactccttctagtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgttta 461  Q
    ||||||   | |||||||||| ||||||||  ||||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||    
T  5350117 tttcta---tattcatattctagagactccccctagtgagcttcagagtcttttgtttgatgatatttccaggacttgtatgcctaggaacgtccgttta 5350213  T
Q  462 atttcttagttttc-tttcctttgggctttgccctcttttgtacc 505  Q
    ||| |||||||||| ||| ||||||||||||||||||||||||||    
T  5350214 attccttagttttctttttctttgggctttgccctcttttgtacc 5350258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 339 - 500
Target Start/End: Complemental strand, 5791467 - 5791306
Alignment:
Q  339 ctaatttcagcattttgacggattttctagatttttcatattctggagactccttctagtgaacttcagagtcttttgtttgatgatattttcgggactt 438  Q
    ||||||||||||||| || | |||||||||||||| ||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||    
T  5791467 ctaatttcagcatttagatgaattttctagatttt-catattccggagactccctctagtgagcttcagagtcttttgtttgatgatattttcggggctt 5791369  T
Q  439 gcatgcctaggaacgtccgtttaatttcttagttttctttc-ctttgggctttgccctctttt 500  Q
    ||||| ||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  5791368 gcatgtctaagaacgtccgtttaatttcttagttttctttctctttaggctttgccctctttt 5791306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 203 - 502
Target Start/End: Original strand, 3782319 - 3782614
Alignment:
Q  203 atgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacccata 302  Q
    ||||||| ||||||||||||||||||| |||| |||| |||||||||||| |||||| |  |||||||||||||||||||||| | ||||||||  ||||    
T  3782319 atgattattgaaaattgcaattttagtagaacgactcttactttggtcagacgtatttgggaacttttgagtttgagttggaccgacaaaattattcata 3782418  T
Q  303 cttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttctagtgaac 402  Q
     |||  | |||||||||| ||||  |||||| ||||||||||||||||||| || | ||||| || | |||||||||||||||||    | ||| |||||    
T  3782419 tttgaggtgaaggcaacaaaagtgtagattgacttgctaatttcagcatttcgatgaatttttta-aattttcatattctggaga----tcctaatgaac 3782513  T
Q  403 ttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttc-ctttgggctttgccctcttttg 501  Q
    |||||||||||  ||||||| ||||||   | | || ||||||||  ||||| |||||||||||||||||||||||| ||||   |||||||||||||||    
T  3782514 ttcagagtcttacgtttgataatatttctagaatttacatgcctaaaaacgttcgtttaatttcttagttttctttctctttaaactttgccctcttttg 3782613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 189 - 429
Target Start/End: Complemental strand, 2037844 - 2037609
Alignment:
Q  189 aagatcttg-tcgacatgattactgaaaattgcaattttagtgg---aacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttgga 284  Q
    ||||||||| |||| ||||||||||||||||  |||||||||||   ||| ||||| |||||| | | |||||||||||| |||||||||||||||| ||    
T  2037844 aagatcttggtcgatatgattactgaaaattataattttagtggtcgaacgactcccactttgattatgcgtattcgacatcttttgagtttgagttaga 2037745  T
Q  285 ctgtcaaaattacccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctgg 384  Q
    |||||||||||| |||||||||| | |||| |||||||||| || ||||||||||||||||||        |  |||||| |||| |||||||||| |||    
T  2037744 ctgtcaaaattaaccatacttggtgtgaagacaacagaagtgcaaattggcttgctaatttca--------atagattttttaga-ttttcatattttgg 2037654  T
Q  385 agactccttctagtgaacttcagagtcttttgtttgatgatattt 429  Q
    ||||||   ||| |||||||||||||| |||||||||||||||||    
T  2037653 agactctccctaatgaacttcagagtcatttgtttgatgatattt 2037609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 330 - 479
Target Start/End: Complemental strand, 7431827 - 7431679
Alignment:
Q  330 attggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttctagtgaacttcagagtcttttgtttgatgatattt 429  Q
    |||||||||||||||||| |||||  | ||||| | ||||||||| |||||||||||| |||| ||| ||| ||||||||| || | |||||||||||||    
T  7431827 attggcttgctaatttcaacatttcaatggattctttagattttt-atattctggagaatcctcctaatgagcttcagagtgttgtatttgatgatattt 7431729  T
Q  430 tcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttc 479  Q
    ||||  ||| |||| |||||||||||| ||||| || |||||||||||||    
T  7431728 tcggagcttacatgtctaggaacgtccatttaaatttttagttttctttc 7431679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 415 - 505
Target Start/End: Original strand, 24468770 - 24468860
Alignment:
Q  415 tgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctttgccctcttttgtacc 505  Q
    ||||||||||||||| |||| |||| ||||| ||||| ||||| |||||||| ||||||  ||||  ||||||||||||||||||||||||    
T  24468770 tgtttgatgatatttccggggcttgaatgccgaggaatgtccggttaatttcgtagtttcttttctcttgggctttgccctcttttgtacc 24468860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 415 - 505
Target Start/End: Original strand, 24473718 - 24473808
Alignment:
Q  415 tgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctttgccctcttttgtacc 505  Q
    ||||||||||||||| |||| |||| ||||| ||||| ||||| |||||||| ||||||  ||||  ||||||||||||||||||||||||    
T  24473718 tgtttgatgatatttccggggcttgaatgccgaggaatgtccggttaatttcgtagtttcttttctcttgggctttgccctcttttgtacc 24473808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 448 - 488
Target Start/End: Complemental strand, 22938857 - 22938817
Alignment:
Q  448 ggaacgtccgtttaatttcttagttttctttcctttgggct 488  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22938857 ggaacgtccgtttaatttcttagttttctttcctttgggct 22938817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 571 - 626
Target Start/End: Original strand, 34191809 - 34191864
Alignment:
Q  571 cgagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaatct 626  Q
    ||||||||||||||||||||||||||||||||||||||  ||| |||| |||||||    
T  34191809 cgagtcatcggttcaatccgatttaatctagttaaatacttataaaaaattaatct 34191864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 571 - 626
Target Start/End: Complemental strand, 5419090 - 5419035
Alignment:
Q  571 cgagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaatct 626  Q
    ||||||||||||||||||| || |||||| |||||||| |||| ||||||||||||    
T  5419090 cgagtcatcggttcaatccaatctaatctggttaaatacctataaaaatttaatct 5419035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 571 - 624
Target Start/End: Original strand, 10992622 - 10992675
Alignment:
Q  571 cgagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaat 624  Q
    |||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||    
T  10992622 cgagtcatcggttcgatccgatctaatctggttaaatacctataaaaatttaat 10992675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 571 - 624
Target Start/End: Original strand, 34259180 - 34259233
Alignment:
Q  571 cgagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaat 624  Q
    |||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||    
T  34259180 cgagtcatcggttcgatccgatctaatctggttaaatacctataaaaatttaat 34259233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 504
Target Start/End: Complemental strand, 8019672 - 8019584
Alignment:
Q  417 tttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagtttt-ctttcctttgggctttgccctcttttgtac 504  Q
    ||||||||| | | ||||||||||||||||| ||| || || |||| |||||| ||||  |||| ||||||||||||||||| ||||||    
T  8019672 tttgatgatttatccgggacttgcatgcctaagaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 8019584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 24468654 - 24468709
Alignment:
Q  298 ccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattt 353  Q
    |||||||||||| ||||| || |||||| | ||||||||||||||||| |||||||    
T  24468654 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 24468709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 24473602 - 24473657
Alignment:
Q  298 ccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattt 353  Q
    |||||||||||| ||||| || |||||| | ||||||||||||||||| |||||||    
T  24473602 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 24473657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 97 - 488
Target Start/End: Original strand, 14024792 - 14025183
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| |||  | |||||||||||||||||||||||||||||| ||    
T  14024792 atgcttttcatgctgaaatgtggggcatgtaccttggtttggacatggcgtggagggagaataccactcatcttatagtggagagtgactcaaagatttt 14024891  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 295  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14024892 ggtcgacatgattactgaaaattgcaattttagtggaactactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 14024991  T
Q  296 acccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttct 395  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||    
T  14024992 acccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcgacggattttctaga-ttttcatattctggagactcctcct 14025090  T
Q  396 agtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggct 488  Q
    ||||| |||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14025091 agtgagcttcagagtcttttgtttgatgatatttccggggcttgcatgcctaagaacgtccgtttaatttcttagttttctttcctttgggct 14025183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 97 - 503
Target Start/End: Original strand, 32386345 - 32386752
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| |||  | |||||||||| ||||||||||||||||||||||    
T  32386345 atgcttttcatgctgaaatgtggggcatgtacctaggtttggacatggcatggagggagaataacactcatcttatactggagagtgactcaaagatctt 32386444  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 295  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32386445 ggtcgacatgattactgaaaattgcaattttagtggaacgactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 32386544  T
Q  296 acccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttct 395  Q
    |||||||||||||| |||||||||| |||| | ||||| ||||||||||||||||||| || |||||||||||| |||||||||||||||||||||  ||    
T  32386545 acccatacttggcgtgaaggcaacataagtgctgattgacttgctaatttcagcatttcgatggattttctaga-ttttcatattctggagactccccct 32386643  T
Q  396 agtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttctt-agttttctttcctttgggctttgccc 494  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| |||||||| |||| |||||||||||||| | |||| ||| |||||| ||||||||    
T  32386644 agtgagcttcagagtcttttgtttgatgatatttccgggacttgtatgcctagaaacgcccgtttaatttcttaattttttttttctttggactttgccc 32386743  T
Q  495 tcttttgta 503  Q
    |||||||||    
T  32386744 tcttttgta 32386752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 258 - 484
Target Start/End: Complemental strand, 240059 - 239834
Alignment:
Q  258 ttcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgac 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |     
T  240059 ttcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcaat 239960  T
Q  358 ggattttctagatttttcatattctggagactccttctagtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccg 457  Q
    |||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  239959 ggattttctaga-ttttcatattctggagactcctcctagtgagcttcagagtcttttgtttgatgatatttccggagcttgcatgcctaggaacgtccg 239861  T
Q  458 tttaatttcttagttttctttcctttg 484  Q
    |||||||||||||||||||||||||||    
T  239860 tttaatttcttagttttctttcctttg 239834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 268 - 469
Target Start/End: Original strand, 30046625 - 30046825
Alignment:
Q  268 tttgagtttgagttggactgtcaaaattacccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttcta 367  Q
    ||||||||||||||||||||||||||||||| || |||| || ||||  || ||||||  ||||||||| |||||||||| |||||||| ||||||||||    
T  30046625 tttgagtttgagttggactgtcaaaattacctattcttgacgtgaagataaaagaagtgtagattggctcgctaatttcaacattttgatggattttcta 30046724  T
Q  368 gatttttcatattctggagactccttctagtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttct 467  Q
    || |||||||||| |||||| |||  |||||||  |||||||||||||||||||||||||||||    ||||||| ||||||||||||||||||||||||    
T  30046725 ga-ttttcatattatggagaatccccctagtgagtttcagagtcttttgtttgatgatattttcaaagcttgcatacctaggaacgtccgtttaatttct 30046823  T
Q  468 ta 469  Q
    ||    
T  30046824 ta 30046825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 415 - 505
Target Start/End: Original strand, 18934323 - 18934413
Alignment:
Q  415 tgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctttgccctcttttgtacc 505  Q
    ||||||||||||||| |||| |||||||||||||||| ||||| |||||||| ||||||  ||||  |||| ||||||||||| |||||||    
T  18934323 tgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagtttcttttctcttggactttgccctctattgtacc 18934413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 570 - 608
Target Start/End: Complemental strand, 13957127 - 13957089
Alignment:
Q  570 tcgagtcatcggttcaatccgatttaatctagttaaata 608  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13957127 tcgagtcatcggttcaatccgatttaatctagttaaata 13957089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 571 - 626
Target Start/End: Original strand, 32383794 - 32383849
Alignment:
Q  571 cgagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaatct 626  Q
    |||||||||||||||||| ||||||||||  ||||||| |||| ||||||||||||    
T  32383794 cgagtcatcggttcaatctgatttaatctgattaaatacctataaaaatttaatct 32383849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 505
Target Start/End: Complemental strand, 4560245 - 4560155
Alignment:
Q  415 tgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctttgccctcttttgtacc 505  Q
    |||||||||||||||  ||| ||| ||||||||| || || || |||||||| ||||||  ||||  ||||| ||||||||||||||||||    
T  4560245 tgtttgatgatatttctggggcttacatgcctagaaatgttcggttaatttcgtagtttcttttctcttgggatttgccctcttttgtacc 4560155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 571 - 624
Target Start/End: Complemental strand, 6459904 - 6459851
Alignment:
Q  571 cgagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaat 624  Q
    |||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||    
T  6459904 cgagtcatcggttcgatccgatctaatctggttaaatacctataaaaatttaat 6459851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 18934207 - 18934262
Alignment:
Q  298 ccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattt 353  Q
    |||||||||||| ||||| || |||||| | ||||||||||||||||| |||||||    
T  18934207 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 18934262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 570 - 608
Target Start/End: Original strand, 33112112 - 33112150
Alignment:
Q  570 tcgagtcatcggttcaatccgatttaatctagttaaata 608  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  33112112 tcgagtcatcgattcaatccgatttaatgtagttaaata 33112150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 97 - 488
Target Start/End: Original strand, 6293873 - 6294264
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| |||  | |||||||||||||||||||||||||||||| ||    
T  6293873 atgcttttcatgctgaaatgtggggcatgtaccttggtttggacatggcgtggagggagaataccactcatcttatagtggagagtgactcaaagatttt 6293972  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 295  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6293973 ggtcgacatgattactgaaaattgcaattttagtggaactactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 6294072  T
Q  296 acccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttct 395  Q
    || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||    
T  6294073 acacatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcgacggattttctaga-ttttcatattctggagactcctcct 6294171  T
Q  396 agtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggct 488  Q
    ||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6294172 agtgagcttcagagtcttttgtttgatgatatttccggggcttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggct 6294264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 97 - 505
Target Start/End: Original strand, 16854806 - 16855211
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| |||  | |||||||||||||||||||||||||||||||||    
T  16854806 atgcttttcatgctgaaatgtggggcatgtacctaggtttggacatggcgtggatggagaataccactcatcttatagtggagagtgactcaaagatctt 16854905  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 295  Q
    | |||||||||||||| |||||| |||||||    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16854906 ggtcgacatgattactaaaaatttcaatttt----gaacgactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 16855001  T
Q  296 acccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttct 395  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  | |||||||||||| ||||||||||||| |||||||  ||    
T  16855002 acccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcaatggattttctaga-ttttcatattctgaagactccccct 16855100  T
Q  396 agtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttc-tttcctttgggctttgccc 494  Q
    ||||| ||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  16855101 agtgagcttcagagtcttttgtttgataatattttcggggcttgcatgtcaaggaacgtccgtttaatttcttagttttctttttctttgggctttgccc 16855200  T
Q  495 tcttttgtacc 505  Q
    |||||||||||    
T  16855201 tcttttgtacc 16855211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 101 - 505
Target Start/End: Original strand, 28705852 - 28706258
Alignment:
Q  101 ttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatcttg-tc 199  Q
    |||||||| |||||| |||||||||||| | ||||||||| || ||||||||||| |||  | ||||||||||||||||||||| |||||||||||| ||    
T  28705852 ttttcatgttgaaatgtggggcatgtacatgggtttggacttggcgtggagggagaataccactcatcttatagtggagagtgaatcaaagatcttggtc 28705951  T
Q  200 gacatgattactgaaaa-ttgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacc 298  Q
    ||||||||||||||||| |||||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  28705952 gacatgattactgaaaaattgcaattttggtggaacgactcctaccttggtcaagcgtattcgacaacttttgagtttgagttggactgtcaaaataacc 28706051  T
Q  299 catacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttctagt 398  Q
    ||||||||||| |||||||||| ||||  | |||||||||||||||||||||||| || ||||||| |||| |||||||||| |||||| | |  |||||    
T  28706052 catacttggcgtgaaggcaacaaaagtgtatattggcttgctaatttcagcatttcgatggattttttaga-ttttcatattttggagaatacccctagt 28706150  T
Q  399 gaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttc-ctttgggctttg-ccctc 496  Q
     | ||||| ||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| |||||||||| || |||||| ||||| |||||    
T  28706151 aagcttcatagtcttttgtttgatgata-tttcggggcctgcatgcctaggaacgtccgtttaattttttagttttctatctctttggactttgaccctc 28706249  T
Q  497 ttttgtacc 505  Q
    |||||||||    
T  28706250 ttttgtacc 28706258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 229 - 479
Target Start/End: Original strand, 39476050 - 39476299
Alignment:
Q  229 tggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgggaaggcaacagaagtcca 328  Q
    |||||| ||||||||||||||||||  ||||||| | |||||||||||| ||||||| ||||||||||| ||||||||||| |||||||||| |||| ||    
T  39476050 tggaacgactcctactttggtcaggtatattcgatagcttttgagtttgggttggaccgtcaaaattactcatacttggcgtgaaggcaacaaaagtgca 39476149  T
Q  329 gattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttctagtgaacttcagagtcttttgtttgatgatatt 428  Q
    ||||| ||||||||||||||||||| || |||||||||||| ||||||||| ||| |||||||  ||||||||||||| | |||||||||||| ||||||    
T  39476150 gattgtcttgctaatttcagcatttcgatggattttctaga-ttttcatatcctgaagactccccctagtgaacttcaaaatcttttgtttgacgatatt 39476248  T
Q  429 ttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttc 479  Q
    |  |  ||||||||||||||||||||||||||||||||||| |||||||||    
T  39476249 tctgaaacttgcatgcctaggaacgtccgtttaatttcttacttttctttc 39476299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 97 - 500
Target Start/End: Original strand, 5555858 - 5556262
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    |||||||||||||||||||||||||| | ||  || ||||||| |||  ||  ||||||  ||  | | ||||||| |||||||| |||| |||||| ||    
T  5555858 atgcttttcatgctgaaatatggggcctctatttaagtttggatatggtgtaaagggagagtaccacttatcttattgtggagagagacttaaagatttt 5555957  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 295  Q
    | |||| |||||||||||||||| ||||||||||  |||  |||| | ||| ||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  5555958 ggtcgatatgattactgaaaattacaattttagtataacgcctccgatttttgtcagacgtattcgacaacttttgagtttgatttggactgtcaaaatt 5556057  T
Q  296 acccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttct 395  Q
    ||||||| |||||  ||||| |||| |||| |||| || ||||||||||||||||||| ||  |||||| |||| |||||||||||| |||||||| |||    
T  5556058 acccatatttggcatgaaggtaacataagtgcagaatgacttgctaatttcagcatttcgatagattttttaga-ttttcatattctagagactccctct 5556156  T
Q  396 agtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttc-ctttgggctttgccc 494  Q
    | ||| |||| || ||||||||||||||||||||   || ||||||||  ||| |||| || |||||||||||| ||| ||||| |||| |  |||||||    
T  5556157 aatgagcttctgattcttttgtttgatgatatttctagggcttgcatgtgtagaaacgcccatttaatttcttaatttcctttctctttagattttgccc 5556256  T
Q  495 tctttt 500  Q
    ||||||    
T  5556257 tctttt 5556262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 371 - 488
Target Start/End: Complemental strand, 38168314 - 38168197
Alignment:
Q  371 ttttcatattctggagactccttctagtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttag 470  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  38168314 ttttcatattctggagactcctcctagtgagcttcagagtcttttgtttgatgatatttccggggcttgcatgcctaggaacgtccgtttaatttcttag 38168215  T
Q  471 ttttctttcctttgggct 488  Q
    ||||||||||||||||||    
T  38168214 ttttctttcctttgggct 38168197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 415 - 505
Target Start/End: Complemental strand, 22065130 - 22065040
Alignment:
Q  415 tgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctttgccctcttttgtacc 505  Q
    ||||||||||||||| |||| |||||||||||||||| ||||| |||||||| ||||||  ||||  |||||||||||||||| |||||||    
T  22065130 tgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagtttcttttctcttgggctttgccctctattgtacc 22065040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 571 - 625
Target Start/End: Complemental strand, 24638896 - 24638842
Alignment:
Q  571 cgagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaatc 625  Q
    ||||||||||||||||||| ||||||||||||||||||  ||| |||||||||||    
T  24638896 cgagtcatcggttcaatcctatttaatctagttaaatacatataaaaatttaatc 24638842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 571 - 608
Target Start/End: Original strand, 962401 - 962438
Alignment:
Q  571 cgagtcatcggttcaatccgatttaatctagttaaata 608  Q
    ||||||||||||||||||||||||||||||||||||||    
T  962401 cgagtcatcggttcaatccgatttaatctagttaaata 962438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 570 - 626
Target Start/End: Original strand, 3014077 - 3014133
Alignment:
Q  570 tcgagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaatct 626  Q
    ||||||||  |||||||||||||||||| |||||||||| |||| ||||||||||||    
T  3014077 tcgagtcacgggttcaatccgatttaatatagttaaatacctataaaaatttaatct 3014133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 570 - 626
Target Start/End: Complemental strand, 3794343 - 3794287
Alignment:
Q  570 tcgagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaatct 626  Q
    |||||||||| ||||||||||||||||| |  ||||||| |||| ||||||||||||    
T  3794343 tcgagtcatcagttcaatccgatttaatatgattaaatacctataaaaatttaatct 3794287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 503
Target Start/End: Original strand, 5308930 - 5309001
Alignment:
Q  433 ggacttgcatgcctaggaacgtccgtttaatttcttagttttcttt-cctttgggctttgccctcttttgta 503  Q
    ||||||||||||||||||| || || |||| |||||| |||| ||| | ||||||||||||||||| |||||    
T  5308930 ggacttgcatgcctaggaatgttcgattaacttcttaattttgtttacttttgggctttgccctctcttgta 5309001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 302
Target Start/End: Complemental strand, 26370869 - 26370734
Alignment:
Q  165 catcttatagtggagagtgactcaaagatcttg-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgac 263  Q
    |||||||||||| ||||||||| |  |||| || | |||||||||||| |||| ||||| |||| ||  ||   | |||||||||| || ||||||| |     
T  26370869 catcttatagtgaagagtgactta--gatcatgatggacatgattacttaaaaatgcaaatttaatgagacgtttactactttggttagacgtattcaa- 26370773  T
Q  264 aacttttgagtttgagttggactgtcaaaattacccata 302  Q
    ||||||||||||||||||||||  ||||||||| |||||    
T  26370772 aacttttgagtttgagttggacaatcaaaattagccata 26370734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 473
Target Start/End: Original strand, 11531505 - 11531563
Alignment:
Q  415 tgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttt 473  Q
    |||||||||||||||||||  |||||||| ||| ||| ||||| |||||||| ||||||    
T  11531505 tgtttgatgatattttcggagcttgcatgtctaagaatgtccgattaatttcgtagttt 11531563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 22065246 - 22065193
Alignment:
Q  298 ccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcat 351  Q
    |||||||||||| ||||| || |||||| | ||||||||||||||||| |||||    
T  22065246 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcat 22065193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 573 - 626
Target Start/End: Original strand, 40960120 - 40960173
Alignment:
Q  573 agtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaatct 626  Q
    |||||||||||||||||||| ||| || |||||||| |||| |||| |||||||    
T  40960120 agtcatcggttcaatccgatctaacctggttaaatacctataaaaaattaatct 40960173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 419 - 479
Target Start/End: Original strand, 30902166 - 30902226
Alignment:
Q  419 tgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttc 479  Q
    ||||||||||||||||||||||||||| || || || |||||| ||  |||||||| ||||    
T  30902166 tgatgatattttcgggacttgcatgccaagcaatgttcgtttagttgtttagttttttttc 30902226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 97 - 488
Target Start/End: Original strand, 42865774 - 42866165
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| |||  | |||||||||||||||||||||||||||||| ||    
T  42865774 atgcttttcatgctgaaatgtggggcatgtaccttggtttggacatggcgtggagggagaataccactcatcttatagtggagagtgactcaaagatttt 42865873  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 295  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42865874 ggtcgacatgattactgaaaattgcaattttagtggaactactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 42865973  T
Q  296 acccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttct 395  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||    
T  42865974 acccatacttggcgggaaggcaacaaaagtgcagattggcttgctaatttcagcatttcgacggattttctaga-ttttcatattctggagactcctcct 42866072  T
Q  396 agtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggct 488  Q
    ||||| |||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42866073 agtgagcttcagagtcttttgtttgatgatatttccggagcttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggct 42866165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 97 - 505
Target Start/End: Complemental strand, 24126665 - 24126256
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||  | |||||||||||||||||||||||||||||||||    
T  24126665 atgcttttcatgctgaaatgtggggcatgtacctaggtttgaacatggcgtggagggagaataccactcatcttatagtggagagtgactcaaagatctt 24126566  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 295  Q
    | |||||||||||||||||||||||||||||||| |||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24126565 ggtcgacatgattactgaaaattgcaattttagttgaatgactcctactttggtcaagcgtattcgacaacttttgagtttgagttggactgtcaaaatt 24126466  T
Q  296 acccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttct 395  Q
    || ||||| ||||| |||||||||| |||| ||||||| ||||||||||||||||||| || |||||||||||| |||||||||||||||||||||  ||    
T  24126465 acacatacatggcgtgaaggcaacataagtgcagattgacttgctaatttcagcatttcgatggattttctaga-ttttcatattctggagactccccct 24126367  T
Q  396 agtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttc-tttcctttgggctttgccc 494  Q
    ||||| |||||||||||||||||||||||||||| | || ||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||    
T  24126366 agtgagcttcagagtcttttgtttgatgatatttccagggcttgcatgcctaggaacttccgtttaatttcttagttttctttttctttgggctttgccc 24126267  T
Q  495 tcttttgtacc 505  Q
    |||||||||||    
T  24126266 tcttttgtacc 24126256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 97 - 505
Target Start/End: Complemental strand, 11995985 - 11995574
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||  | ||||||||||||||| |||||||||||||||||    
T  11995985 atgcttttcatgctgaaatgtggggcatgtacctaggtttggacatggcgtggagggagaataccactcatcttatagtggatagtgactcaaagatctt 11995886  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcg--tattcgacaacttttgagtttgagttggactgtcaaaa 293  Q
    | ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  11995885 ggtcgacatgattactgaaaattgcaattttagtggaatgacttctactttggtcaggcgcgtattcgacaacttttgagtttgagttggactgtcaaaa 11995786  T
Q  294 ttacccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactcctt 393  Q
    ||||| |||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| || |||||||||| | |||||||||||||||||||||      
T  11995785 ttacctatacttggcgtgaaggcaacagaagtgcagattgtcttgctaatttcagcatttcgatggattttctata-ttttcatattctggagactcccc 11995687  T
Q  394 ctagtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttc-tttcctttgggctttgc 492  Q
    ||||||| || ||||||||||| ||| |||||||||   || |||||||| ||||||||||||||||||||||||||||||| ||| ||||||| |||||    
T  11995686 ctagtgagctccagagtcttttttttaatgatatttcaagggcttgcatgtctaggaacgtccgtttaatttcttagttttctttttctttgggatttgc 11995587  T
Q  493 cctcttttgtacc 505  Q
    |||||||||||||    
T  11995586 cctcttttgtacc 11995574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 197 - 501
Target Start/End: Complemental strand, 40615189 - 40614893
Alignment:
Q  197 gtcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatta 296  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  40615189 gtcgacatgattactaaaaattgcaattttggtggaacaactcctactttggtcaagcgtattcgacaacttttgagtttgagttggactgtcaatatta 40615090  T
Q  297 cccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttcta 396  Q
    | ||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||| || |||          |||||||||| |||||| |||   ||    
T  40615089 ctcatacttggcgtgaaggtaacagaagtgcagattggtttgctaatttcagcatttcgatgga----------ttttcatattatggagaatcccctta 40615000  T
Q  397 gtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttc-ctttgggctt-tgccc 494  Q
    |||| ||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||    
T  40614999 gtgagcttcagagtcttttgtttgatgatatttctggggcttgcatgcctaggaacgtccgtttaatttcttagttttctttctctttgggcttcggccc 40614900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 431
Target Start/End: Original strand, 17526665 - 17526820
Alignment:
Q  275 ttgagttggactgtcaaaattacccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagattttt 374  Q
    ||||||||||||||| |||||| |||||| | ||| || ||||||||||||  || ||| ||||||||||| ||||||| || ||||| | | || ||||    
T  17526665 ttgagttggactgtccaaattaaccatacattgcgtgagggcaacagaagtgtagtttgacttgctaattttagcatttcgatggattctat-gaatttt 17526763  T
Q  375 catattctggagactccttctagtgaacttcagagtcttttgtttgatgatattttc 431  Q
     || || ||||| ||||| ||  |||||||||||||||||| |||| |||| |||||    
T  17526764 aatcttttggagcctcctccttatgaacttcagagtcttttatttgttgatcttttc 17526820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 415 - 505
Target Start/End: Original strand, 17290299 - 17290389
Alignment:
Q  415 tgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctttgccctcttttgtacc 505  Q
    ||||||||||||||| |||| ||||||||||||| || ||||| |||||||| ||||||  ||||  |||| ||||||||||| |||||||    
T  17290299 tgtttgatgatatttccggggcttgcatgcctagaaatgtccggttaatttcgtagtttcttttctcttggactttgccctctattgtacc 17290389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 417 - 505
Target Start/End: Original strand, 13187159 - 13187248
Alignment:
Q  417 tttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagtttt-ctttcctttgggctttgccctcttttgtacc 505  Q
    ||||||||| | |||||| |||||||||||||||| || || |||| |||||| ||||  |||| ||||||||||||||||| |||||||    
T  13187159 tttgatgatttattcggggcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtacc 13187248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 505
Target Start/End: Complemental strand, 24126031 - 24125985
Alignment:
Q  460 taatttcttagttttctttc-ctttgggctttgccctcttttgtacc 505  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||    
T  24126031 taatttcttagttttctttttctttgggctttgccctcttttgtacc 24125985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 570 - 626
Target Start/End: Original strand, 16106550 - 16106606
Alignment:
Q  570 tcgagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaatct 626  Q
    |||||||| ||  ||||| |||||||||||||||||||| |||| ||||||||||||    
T  16106550 tcgagtcaccgagtcaattcgatttaatctagttaaatagctataaaaatttaatct 16106606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 571 - 618
Target Start/End: Original strand, 6065417 - 6065464
Alignment:
Q  571 cgagtcatcggttcaatccgatttaatctagttaaatatctattaaaa 618  Q
    |||||||||||||||||||||||||||||  ||||||| |||| ||||    
T  6065417 cgagtcatcggttcaatccgatttaatctgattaaatacctataaaaa 6065464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 583 - 626
Target Start/End: Original strand, 16106633 - 16106676
Alignment:
Q  583 tcaatccgatttaatctagttaaatatctattaaaatttaatct 626  Q
    ||||| |||||||||||||||||||| |||| ||||||||||||    
T  16106633 tcaattcgatttaatctagttaaatagctataaaaatttaatct 16106676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 505
Target Start/End: Complemental strand, 7305025 - 7304956
Alignment:
Q  436 cttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctttgccctcttttgtacc 505  Q
    |||||||||||| ||| || || |||  ||||||||||| |||  ||||||||||||||||| |||||||    
T  7305025 cttgcatgcctaagaatgttcgattagcttcttagttttgttttttttgggctttgccctctcttgtacc 7304956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 571 - 624
Target Start/End: Complemental strand, 29781613 - 29781560
Alignment:
Q  571 cgagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaat 624  Q
    ||||||| |||||||||||||||||||||  ||||||| ||||  |||||||||    
T  29781613 cgagtcaccggttcaatccgatttaatctgattaaatacctatacaaatttaat 29781560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 505
Target Start/End: Complemental strand, 40426094 - 40426005
Alignment:
Q  417 tttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttccttt-gggctttgccctcttttgtacc 505  Q
    ||||||||| | | |||| |||||||||||||||| || || |||| |||||| | || ||| |||| |||||||||||||| |||||||    
T  40426094 tttgatgatttatccggggcttgcatgcctaggaatgttcgattaacttcttaatcttgttttcttttgggctttgccctctcttgtacc 40426005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 117 - 504
Target Start/End: Original strand, 37502966 - 37503355
Alignment:
Q  117 tggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatcttg-tcgacatgattactgaaa 215  Q
    |||||||| ||||||||||||||| || || |||||||| |||| | |||| ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  37502966 tggggcatatacctaggtttggacttggcgaggagggagaatatcactcattttatagtggagagtgactcaaagattttggtcgacatgattactgaaa 37503065  T
Q  216 attgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgggaagg 315  Q
    |||||||| || ||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||    
T  37503066 attgcaatgttggtggaacgactcctaccttggtcaagcgtattcgacaacttttgagtttgagttggattgtcaaaattacccatacttgacgtgaagg 37503165  T
Q  316 caacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttctagtgaacttcagagtctttt 415  Q
    |||||||||| ||||||| ||||||||||| ||||||| || ||||| |||||| |||||||||||| |||| |||  ||||||| |||||||||| | |    
T  37503166 caacagaagtgcagattgacttgctaattttagcatttcgatggattctctaga-ttttcatattctagagaatccccctagtgagcttcagagtcctgt 37503264  T
Q  416 gtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttc-ctttgggcttt-gccctcttttgtac 504  Q
    |||||||||||||||||| ||||||||| |||| |||||||||||||| | ||||||||||||| ||||||||||| ||||||||||||||    
T  37503265 gtttgatgatattttcggaacttgcatgtctagaaacgtccgtttaatcttttagttttctttctctttgggctttggccctcttttgtac 37503355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 101 - 505
Target Start/End: Original strand, 1182349 - 1182776
Alignment:
Q  101 ttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatcttgt-c 199  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||| || | |  | |||||||| |||||||||||||| |||||| |||  |    
T  1182349 ttttcatgctgaaatgtggggcatgtacctaggtttggacatgtcgtggaggtagaacaccactcatcttacagtggagagtgactaaaagatattgggc 1182448  T
Q  200 gacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattaccc 299  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||||| |||| |||||| ||| | ||||||||||||||||||||| |||||||||||     
T  1182449 gacatgattactgaaaatcacaattttagtggaacgactcctacttttgtcaagcgtatccgaaatcttttgagtttgagttggactatcaaaattacca 1182548  T
Q  300 atacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcat--------------tttga--cggattttctagatttttcatattctg 383  Q
    |||||||||| |||||||||| |||| || |||| |||||||||||||||||              |||||   ||||||| |||| | |||||||| ||    
T  1182549 atacttggcgtgaaggcaacataagtgcatattgacttgctaatttcagcatttcggagtcttttgtttgagttggattttataga-tattcatattttg 1182647  T
Q  384 gagactccttctagtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttcttt----- 478  Q
    |||||||| |||||||| |||| |||| ||||||||||||||||||| ||| |||||||||||| |||||||| |||||||||||| |||| |||         
T  1182648 gagactccctctagtgagcttctgagtattttgtttgatgatatttttggggcttgcatgcctaagaacgtccatttaatttcttacttttttttttttt 1182747  T
Q  479 --cctttgggctttgccctcttttgtacc 505  Q
       ||||||||||||||||||||||||||    
T  1182748 tctctttgggctttgccctcttttgtacc 1182776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 274 - 505
Target Start/End: Original strand, 25905846 - 25906069
Alignment:
Q  274 tttgagttggactgtcaaaattacccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattttgacggattttctagatttt 373  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||||||||| ||||||| |||||||||||||||||||  | |||||||||||| |||    
T  25905846 tttgagttggactgtcaaaattactcatacttggtgtgaaggcaacagaagtgcagattgacttgctaatttcagcatttcaatggattttctaga-ttt 25905944  T
Q  374 tcatattctggagactccttctagtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttt 473  Q
     |||||||| ||||||||  ||||||| |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||        |||||||||    
T  25905945 acatattcttgagactccccctagtgagcttcagagtcttttgtttgatgatatttccggggtttgcatgcctaggaacgtcc--------tcttagttt 25906036  T
Q  474 tc-tttcctttgggctttgccctcttttgtacc 505  Q
    || ||| ||||||||||||||||||||||||||    
T  25906037 tctttttctttgggctttgccctcttttgtacc 25906069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 97 - 291
Target Start/End: Complemental strand, 43328951 - 43328757
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||| |||  | |||||||||||||||||||||||||||||||||    
T  43328951 atgcttttcatgctgaaatgtggggcatgtacctaggtttggacatagcgtggagggagaataccactcatcttatagtggagagtgactcaaagatctt 43328852  T
Q  197 -gtcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaa 291  Q
     |||||||| ||||||||||||||||||||||||||||| || | ||||||| | ||||||||||||||| |||||||||| | ||||||||||||    
T  43328851 ggtcgacataattactgaaaattgcaattttagtggaacgacacttactttgattaggcgtattcgacaa-ttttgagttttaattggactgtcaa 43328757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 122 - 478
Target Start/End: Complemental strand, 30775929 - 30775576
Alignment:
Q  122 catgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatcttg-tcgacatgattactgaaaattgc 220  Q
    |||||||||||||||| ||||| | ||||||||| | || ||  ||||||||| ||| ||||||||||| |||| | |||||||| |||  |||||||||    
T  30775929 catgtacctaggtttgtacatggcatggagggagaacatcata-atcttatagcggaaagtgactcaaatatctcggtcgacatgtttatagaaaattgc 30775831  T
Q  221 aattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaattacccatacttggcgggaaggcaaca 320  Q
    |  |||||| |||| |||  ||||||||| ||| || ||||| | ||||||||||| ||| |||| |||||||||||||||  |||||| ||| ||||||    
T  30775830 a--tttagtagaacgacttatactttggttaggtgtgttcgaaagcttttgagtttaagtcggacggtcaaaattacccatt-ttggcgtgaaagcaaca 30775734  T
Q  321 gaagtccagattggcttgctaatttcagcattttgacggattttctagatttttcatattctggagactccttctagtgaacttcagagtcttttgtttg 420  Q
     || ||||| ||| ||||||||||| |||||||||| ||||||| |||| |||||||||  || ||||||||  |||||||||||| |||||||||||||    
T  30775733 taaatccaggttgacttgctaatttaagcattttgatggattttttaga-ttttcatatcatgtagactcctcttagtgaacttcaaagtcttttgtttg 30775635  T
Q  421 atgatattt-tcgggacttgcatgcctaggaacgtccgtttaatttcttagttttcttt 478  Q
    | | ||||| | ||  |||| ||| |||||||| |||||||||||||||||||||||||    
T  30775634 acggtatttctaggagcttgtatgtctaggaacatccgtttaatttcttagttttcttt 30775576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 278 - 469
Target Start/End: Complemental strand, 3461650 - 3461459
Alignment:
Q  278 agttggactgtcaaaattacccatacttggcgggaaggcaacagaagtccagattggctt-gctaatttcagcattttgacggattttctagatttttca 376  Q
    |||||||| || |||||||| |||| |||||  |||||| ||| |||| || |||||||| |||||||| ||||| |  |  ||||||||||||||| ||    
T  3461650 agttggaccgttaaaattactcatatttggcatgaaggctacaaaagtgcatattggctttgctaatttgagcatatcaatagattttctagatttt-ca 3461552  T
Q  377 tattctggagactccttctagtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttctta 469  Q
    ||||||||||| |||  ||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||  ||||||||||||||    
T  3461551 tattctggagaatccccctaatgaacttcagagtcttttgtttgatgatatttttgaggcttgcatgcctaggaacgagcgtttaatttctta 3461459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 97 - 371
Target Start/End: Complemental strand, 41420726 - 41420450
Alignment:
Q  97 atgcttttcatgctgaaatatggggcatgtacctaggtttggacatgacgtggagggaggatattattcatcttatagtggagagtgactcaaagatctt 196  Q
    |||||||||||| |||||| || | ||  ||||||||||||||||||  |||||||||| |    | ||||||||||||| |||| |||||||| || ||    
T  41420726 atgcttttcatgttgaaatgtgagacacatacctaggtttggacatggagtggagggagaacgccactcatcttatagtgaagagcgactcaaatatttt 41420627  T
Q  197 g-tcgacatgattactgaaaattgcaattttagtggaacaactcctactttggtcaggcgtattcgacaacttttgagtttgagttggactgtcaaaatt 295  Q
      |||| ||||||| ||||||||||||||||||||   ||||| |||||||||| || | |||| || | ||||||||||||| |||||  |||||| ||    
T  41420626 tatcgatatgattagtgaaaattgcaattttagtgagtcaacttctactttggttagccatatttgaaagcttttgagtttgaattggatagtcaaagtt 41420527  T
Q  296 acccatacttggcgggaaggcaacagaagtccagattggcttgctaa-tttcagcattttgacggattttctagatt 371  Q
    | |||||| ||| | |||| ||||| || |  | | ||||||||||| ||||| ||||| || | ||||||||||||    
T  41420526 atccatacctggtgtgaagacaacaaaaatggatactggcttgctaattttcatcatttcgatgaattttctagatt 41420450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 415 - 505
Target Start/End: Original strand, 46428826 - 46428916
Alignment:
Q  415 tgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctttgccctcttttgtacc 505  Q
    ||||||||||||||| || | |||||||||||||||| |||||||||||||| ||||||  ||||  ||||||||||||||||||||||||    
T  46428826 tgtttgatgatatttccgaggcttgcatgcctaggaatgtccgtttaatttcgtagtttcttttctcttgggctttgccctcttttgtacc 46428916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 415 - 505
Target Start/End: Complemental strand, 54812177 - 54812087
Alignment:
Q  415 tgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctttgccctcttttgtacc 505  Q
    ||||||||||||||| | || |||||||||||||||| ||||| ||||||||  |||||  |||| ||||||||||||||||| |||||||    
T  54812177 tgtttgatgatatttcccgggcttgcatgcctaggaatgtccggttaatttcgcagtttcttttcttttgggctttgccctctattgtacc 54812087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 394 - 455
Target Start/End: Complemental strand, 43329121 - 43329060
Alignment:
Q  394 ctagtgaacttcagagtcttttgtttgatgatattttcgggacttgcatgcctaggaacgtc 455  Q
    ||||||| ||||||||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  43329121 ctagtgagcttcagagtcttttgtttgatgatatttttggagcttgcatgcctaggaacgtc 43329060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 415 - 505
Target Start/End: Original strand, 42794756 - 42794846
Alignment:
Q  415 tgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctttgccctcttttgtacc 505  Q
    ||||||||||||||| |||| |||||| ||||||||| || || |||||||| ||||||  ||||   |||||||||||||||||||||||    
T  42794756 tgtttgatgatatttccggggcttgcacgcctaggaatgtgcggttaatttcgtagtttcttttctcctgggctttgccctcttttgtacc 42794846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 570 - 625
Target Start/End: Complemental strand, 40918379 - 40918324
Alignment:
Q  570 tcgagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaatc 625  Q
    ||||||||||||||||||||||||||||||  |||||||||||| ||| |||||||    
T  40918379 tcgagtcatcggttcaatccgatttaatctgattaaatatctataaaattttaatc 40918324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 570 - 608
Target Start/End: Complemental strand, 42907966 - 42907928
Alignment:
Q  570 tcgagtcatcggttcaatccgatttaatctagttaaata 608  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42907966 tcgagtcatcggttcaatccgatttaatctagttaaata 42907928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 573 - 626
Target Start/End: Complemental strand, 29727932 - 29727879
Alignment:
Q  573 agtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaatct 626  Q
    ||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||    
T  29727932 agtcaccggttcaattcgatttaatctagttaaatagctataaaaatttaatct 29727879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 455 - 502
Target Start/End: Original strand, 43329125 - 43329173
Alignment:
Q  455 ccgtttaatttcttagttttc-tttcctttgggctttgccctcttttgt 502  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  43329125 ccgtttaatttcttagttttctttttctttgggctttgccctcttttgt 43329173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 574 - 625
Target Start/End: Original strand, 35054618 - 35054669
Alignment:
Q  574 gtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaatc 625  Q
    |||||||||||||||| ||||||||||||||||||  ||| |||||||||||    
T  35054618 gtcatcggttcaatccaatttaatctagttaaatacatataaaaatttaatc 35054669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 500
Target Start/End: Complemental strand, 43912180 - 43912096
Alignment:
Q  416 gtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctttgccctctttt 500  Q
    |||||||||||||| ||||  ||||||||||| ||| ||||  |||||||| ||||||  ||||  ||||| |||||||||||||    
T  43912180 gtttgatgatatttccggggtttgcatgcctaagaatgtccagttaatttcgtagtttcttttctcttgggttttgccctctttt 43912096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 571 - 626
Target Start/End: Original strand, 51537095 - 51537150
Alignment:
Q  571 cgagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaatct 626  Q
    ||||||| ||||||||| ||||||||||| ||||||||  ||| ||||||||||||    
T  51537095 cgagtcaccggttcaattcgatttaatctggttaaatagttataaaaatttaatct 51537150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 54812293 - 54812238
Alignment:
Q  298 ccatacttggcgggaaggcaacagaagtccagattggcttgctaatttcagcattt 353  Q
    |||||||||||| ||||| || |||||| | ||||||||||||||||| |||||||    
T  54812293 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 54812238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 570 - 608
Target Start/End: Complemental strand, 53351352 - 53351314
Alignment:
Q  570 tcgagtcatcggttcaatccgatttaatctagttaaata 608  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  53351352 tcgagtcatcgattcaatccgatttaatctagctaaata 53351314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 27156347 - 27156283
Alignment:
Q  164 tcatcttatagtggagagtgactcaaagatcttg-tcgacatgattactgaaaattgcaatttta 227  Q
    ||||||||||||||| ||||| |||||||| ||| ||||||||||| |||| |||| ||| ||||    
T  27156347 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttta 27156283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 412 - 500
Target Start/End: Original strand, 36275929 - 36276016
Alignment:
Q  412 ttttgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctttgccctctttt 500  Q
    ||||||| || ||||||| |||   |||||||| |||||| || ||||||||||| || |||| ||| |||||||||||||| ||||||    
T  36275929 ttttgttcgaggatatttccggagtttgcatgcttaggaatgttcgtttaatttcataatttt-ttttctttgggctttgccttctttt 36276016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 415 - 505
Target Start/End: Complemental strand, 1222909 - 1222819
Alignment:
Q  415 tgtttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagttttctttcctttgggctttgccctcttttgtacc 505  Q
    ||||||||||||||| |||| |||||||||||||||| ||||| |||||||| ||||||  ||||  |||||||||||||||| |||||||    
T  1222909 tgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagtttcttttctcttgggctttgccctctattgtacc 1222819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 571 - 626
Target Start/End: Complemental strand, 23595888 - 23595833
Alignment:
Q  571 cgagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaatct 626  Q
    ||||||||||||||||||||||||||||||||||||||  ||| |||| |||||||    
T  23595888 cgagtcatcggttcaatccgatttaatctagttaaatacttataaaaaattaatct 23595833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 474
Target Start/End: Complemental strand, 20679066 - 20679009
Alignment:
Q  417 tttgatgatattttcgggacttgcatgcctaggaacgtccgtttaatttcttagtttt 474  Q
    ||||||||||||| |||| |||||||||||||||| || |||||| ||  ||||||||    
T  20679066 tttgatgatatttccggggcttgcatgcctaggaatgttcgtttagttgtttagtttt 20679009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 572 - 626
Target Start/End: Original strand, 4835 - 4889
Alignment:
Q  572 gagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaatct 626  Q
    |||||||| ||||||||||||||||||| |||||||| |||| ||||||||||||    
T  4835 gagtcatcagttcaatccgatttaatctggttaaatacctataaaaatttaatct 4889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 572 - 626
Target Start/End: Original strand, 4855 - 4909
Alignment:
Q  572 gagtcatcggttcaatccgatttaatctagttaaatatctattaaaatttaatct 626  Q
    |||||||| ||||||||||||||||||| |||||||| |||| ||||||||||||    
T  4855 gagtcatcagttcaatccgatttaatctggttaaatacctataaaaatttaatct 4909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University