View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928-Insertion-12 (Length: 401)

Name: NF4928-Insertion-12
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928-Insertion-12
NF4928-Insertion-12
[»] chr6 (16 HSPs)
chr6 (207-397)||(2679824-2680013)
chr6 (176-397)||(2615337-2615560)
chr6 (249-391)||(2603106-2603248)
chr6 (252-391)||(2429282-2429421)
chr6 (251-397)||(2647378-2647527)
chr6 (249-391)||(2445697-2445839)
chr6 (249-391)||(2575090-2575232)
chr6 (12-50)||(12799034-12799072)
chr6 (11-75)||(1615039-1615103)
chr6 (11-54)||(1614844-1614887)
chr6 (9-55)||(30369813-30369858)
chr6 (11-52)||(2164698-2164739)
chr6 (11-52)||(2176331-2176372)
chr6 (12-49)||(2840824-2840861)
chr6 (12-49)||(12730577-12730614)
chr6 (12-44)||(499346-499378)
[»] chr5 (5 HSPs)
chr5 (11-52)||(36501432-36501473)
chr5 (11-52)||(22408787-22408828)
chr5 (15-54)||(36628671-36628710)
chr5 (12-49)||(10169050-10169087)
chr5 (12-49)||(16039742-16039779)
[»] chr7 (9 HSPs)
chr7 (11-79)||(27756271-27756338)
chr7 (11-55)||(35793404-35793448)
chr7 (11-90)||(24432636-24432713)
chr7 (11-54)||(43657836-43657879)
chr7 (12-49)||(9477432-9477469)
chr7 (8-49)||(47030310-47030351)
chr7 (17-79)||(9500149-9500210)
chr7 (12-46)||(24679086-24679120)
chr7 (12-50)||(30283440-30283478)
[»] chr3 (13 HSPs)
chr3 (11-50)||(3354926-3354965)
chr3 (15-55)||(1807645-1807685)
chr3 (11-49)||(49579153-49579191)
chr3 (11-79)||(50420862-50420929)
chr3 (11-82)||(3354752-3354822)
chr3 (11-54)||(43902561-43902604)
chr3 (12-79)||(53255266-53255332)
chr3 (12-50)||(17258172-17258210)
chr3 (11-49)||(33687639-33687677)
chr3 (12-50)||(40988632-40988670)
chr3 (12-49)||(47284533-47284570)
chr3 (12-49)||(54716748-54716785)
chr3 (11-50)||(26466001-26466041)
[»] chr2 (9 HSPs)
chr2 (8-87)||(31227126-31227204)
chr2 (11-50)||(14289299-14289338)
chr2 (11-86)||(23993900-23993974)
chr2 (12-50)||(35500333-35500371)
chr2 (12-55)||(14983942-14983985)
chr2 (12-55)||(29370745-29370788)
chr2 (12-49)||(35180527-35180564)
chr2 (12-49)||(37343687-37343724)
chr2 (7-35)||(13491526-13491554)
[»] chr4 (11 HSPs)
chr4 (11-55)||(33122859-33122903)
chr4 (11-50)||(3369881-3369920)
chr4 (22-96)||(37831581-37831654)
chr4 (13-88)||(52865377-52865451)
chr4 (12-55)||(53831181-53831224)
chr4 (12-50)||(49804338-49804376)
chr4 (12-49)||(26858379-26858416)
chr4 (12-97)||(47742219-47742303)
chr4 (17-85)||(13825881-13825947)
chr4 (11-75)||(16322987-16323050)
chr4 (7-47)||(19938563-19938603)
[»] scaffold1088 (1 HSPs)
scaffold1088 (11-54)||(2111-2154)
[»] scaffold0006 (1 HSPs)
scaffold0006 (8-79)||(162281-162351)
[»] chr8 (11 HSPs)
chr8 (12-55)||(8409807-8409850)
chr8 (12-55)||(29196604-29196647)
chr8 (11-54)||(29219106-29219149)
chr8 (11-54)||(29219364-29219407)
chr8 (12-55)||(45522433-45522476)
chr8 (12-50)||(5645767-5645805)
chr8 (12-86)||(8951039-8951112)
chr8 (6-52)||(9498941-9498987)
chr8 (11-52)||(5899242-5899283)
chr8 (12-49)||(7477372-7477409)
chr8 (11-52)||(9234721-9234762)
[»] scaffold0092 (1 HSPs)
scaffold0092 (11-77)||(37792-37856)
[»] chr1 (11 HSPs)
chr1 (8-50)||(29816410-29816451)
chr1 (12-50)||(37008251-37008289)
chr1 (11-79)||(13575143-13575209)
chr1 (12-47)||(367161-367196)
chr1 (11-54)||(22347547-22347590)
chr1 (11-85)||(1484664-1484737)
chr1 (12-49)||(13344417-13344454)
chr1 (15-51)||(1484403-1484439)
chr1 (11-75)||(10231117-10231180)
chr1 (11-79)||(10532498-10532565)
chr1 (11-87)||(31651332-31651406)
[»] scaffold0286 (1 HSPs)
scaffold0286 (11-52)||(17670-17711)
[»] scaffold0047 (2 HSPs)
scaffold0047 (12-49)||(63070-63107)
scaffold0047 (12-49)||(63305-63342)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 207 - 397
Target Start/End: Complemental strand, 2680013 - 2679824
Alignment:
Q  207 tcttatcatcacaatagtaagaatacttttttgttgtggtggcaaatgggtggtggtgatgagaaaaatgtttccattaatgttaagcaaaagaagaatg 306  Q
    ||||||||||| ||||| |||| ||||| || |||||| | ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||    
T  2680013 tcttatcatcagaatagaaagagtacttgtt-gttgtgattgcaaatgggtggtggtgatcagaaaaatgtttccattaatgttaagaaaaagaaaaatg 2679915  T
Q  307 gttctttaaagtccattttcatgcatgctgatgttcttgattgttttttcatggcttttggtttgattggtgccattggtgatggactaat 397  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2679914 gttcttttaggtccattttcatgcatgctgatgttcttgattgttttttcatggcttttggtttgattggtgccattggtgatggactaat 2679824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 176 - 397
Target Start/End: Original strand, 2615337 - 2615560
Alignment:
Q  176 aagaaaaatcacactctatttgattgctttttcttatcatcacaata--------gtaagaatacttttttgttgtggtggcaaatgggtggtggtgatg 267  Q
    ||||||||||| |||||||||| |||||||| ||| |||||||| ||        ||| ||||||||||| |||||||||||||||| ||||||          
T  2615337 aagaaaaatcatactctatttggttgcttttccttttcatcacagtactacgttggtatgaatactttttggttgtggtggcaaatgtgtggtg------ 2615430  T
Q  268 agaaaaatgtttccattaatgttaagcaaaagaagaatggttctttaaagtccattttcatgcatgctgatgttcttgattgttttttcatggcttttgg 367  Q
    | ||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  2615431 aaaaaaatgtttccattaatgataagaaaaagaagaatggttctttgaagtccattttcatgcatgctgatgttcttgattggtttttcatggtttttgg 2615530  T
Q  368 tttgattggtgccattggtgatggactaat 397  Q
    ||||||||||||||||||||||||||||||    
T  2615531 tttgattggtgccattggtgatggactaat 2615560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 249 - 391
Target Start/End: Complemental strand, 2603248 - 2603106
Alignment:
Q  249 caaatgggtggtggtgatgagaaaaatgtttccattaatgttaagcaaaagaagaatggttctttaaagtccattttcatgcatgctgatgttcttgatt 348  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||| |||||||| ||||    
T  2603248 caaatgggtggtggtgatcagaaaaatgtttccattaatgttaagaaaaagaaaaatggttcttttaagtcaattttcatgcatgcagatgttctagatt 2603149  T
Q  349 gttttttcatggcttttggtttgattggtgccattggtgatgg 391  Q
    | |||||||||| |||||||||||||||| |||||||||||||    
T  2603148 ggtttttcatggtttttggtttgattggttccattggtgatgg 2603106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 252 - 391
Target Start/End: Original strand, 2429282 - 2429421
Alignment:
Q  252 atgggtggtggtgatgagaaaaatgtttccattaatgttaagcaaaagaagaatggttctttaaagtccattttcatgcatgctgatgttcttgattgtt 351  Q
    ||||||||||||||| ||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  2429282 atgggtggtggtgatcagaaaaatgtttccattaatgataagaaaaagaaaaatggttctttcaagtccattttcatgcatgctgatgttcttgattggt 2429381  T
Q  352 ttttcatggcttttggtttgattggtgccattggtgatgg 391  Q
    |||||||||||||||||||  |||| || |||||||||||    
T  2429382 ttttcatggcttttggtttttttggggctattggtgatgg 2429421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 251 - 397
Target Start/End: Complemental strand, 2647527 - 2647378
Alignment:
Q  251 aatgggtggtggtgatgagaaaaatgtttccattaatgttaagca---aaagaagaatggttctttaaagtccattttcatgcatgctgatgttcttgat 347  Q
    |||||||||| ||||| |||||||||||||||||||||||||| |   |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  2647527 aatgggtggtagtgatcagaaaaatgtttccattaatgttaagaagaaaaagaaaaatggttcttttaagtccattttcatgcatgctgatgttcttgat 2647428  T
Q  348 tgttttttcatggcttttggtttgattggtgccattggtgatggactaat 397  Q
    ||||| || ||||||||||||||| |||| ||||||||||||||| ||||    
T  2647427 tgtttcttaatggcttttggtttgtttggagccattggtgatggaataat 2647378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 249 - 391
Target Start/End: Original strand, 2445697 - 2445839
Alignment:
Q  249 caaatgggtggtggtgatgagaaaaatgtttccattaatgttaagcaaaagaagaatggttctttaaagtccattttcatgcatgctgatgttcttgatt 348  Q
    |||||||||||||||||  ||||||||||||| |||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| || |    
T  2445697 caaatgggtggtggtgagcagaaaaatgtttctattaatgttaagaaaaagaaaaatggttcttttaagtccattttcatgcatgctgatgttctagact 2445796  T
Q  349 gttttttcatggcttttggtttgattggtgccattggtgatgg 391  Q
    | ||||| |||| ||||||||   |||| || |||||||||||    
T  2445797 ggtttttaatggtttttggttcatttggggctattggtgatgg 2445839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 249 - 391
Target Start/End: Complemental strand, 2575232 - 2575090
Alignment:
Q  249 caaatgggtggtggtgatgagaaaaatgtttccattaatgttaagcaaaagaagaatggttctttaaagtccattttcatgcatgctgatgttcttgatt 348  Q
    |||||||||||||||||| |||||||||||| ||||  |   ||| ||||||| ||||||||||| ||||| |||||||||||||| |||||||| ||||    
T  2575232 caaatgggtggtggtgatcagaaaaatgtttacattgttaagaagaaaaagaaaaatggttcttttaagtcaattttcatgcatgcagatgttctagatt 2575133  T
Q  349 gttttttcatggcttttggtttgattggtgccattggtgatgg 391  Q
    | |||||||||| |||||||||||||||| |||||||||||||    
T  2575132 ggtttttcatggtttttggtttgattggttccattggtgatgg 2575090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 12799034 - 12799072
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  12799034 ttgtattttattttgttaggtgaccaaaatcgcaacttc 12799072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 1615039 - 1615103
Alignment:
Q  11 attgtattttattttgtta-ggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactg 75  Q
    ||||||||||||||||||| |||| ||||||||||||||| || |||||||| | |||||||||||    
T  1615039 attgtattttattttgttaggggggccaaaatcgcaactttct-aatacttagggggctaaaactg 1615103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 1614887 - 1614844
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaa 54  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||    
T  1614887 attgtattttattttgttaggaggccacaatcgcaacttcctaa 1614844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 30369858 - 30369813
Alignment:
Q  9 gtattgtattttattttgttaggggaccaaaatcgcaacttcctaaa 55  Q
    |||| ||||||||||||||||||||| ||||||||||||||| ||||    
T  30369858 gtatagtattttattttgttagggga-caaaatcgcaacttcttaaa 30369813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 2164698 - 2164739
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcct 52  Q
    ||||||||||||||||||||||   |||||||||||||||||    
T  2164698 attgtattttattttgttagggtgtcaaaatcgcaacttcct 2164739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 2176331 - 2176372
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcct 52  Q
    ||||||||||||||||||||||   |||||||||||||||||    
T  2176331 attgtattttattttgttagggtgtcaaaatcgcaacttcct 2176372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 2840861 - 2840824
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  2840861 ttgtattttttttttttaggggaccaaaatcgcaactt 2840824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 12730577 - 12730614
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  12730577 ttgtattttaattagttaggggaccaaaatcgcaactt 12730614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 499346 - 499378
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgc 44  Q
    ||||| |||||||||||||||||||||||||||    
T  499346 ttgtaatttattttgttaggggaccaaaatcgc 499378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 36501473 - 36501432
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcct 52  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  36501473 attgtattttattttgttaggggaccaaaatcgcaacttcct 36501432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 22408787 - 22408828
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcct 52  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  22408787 attgtattttattttgttagggggtcaaaatcgcaacttcct 22408828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 36628671 - 36628710
Alignment:
Q  15 tattttattttgttaggggaccaaaatcgcaacttcctaa 54  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  36628671 tattttattttattaggggaccaaaattgcaacttcctaa 36628710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 10169087 - 10169050
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  10169087 ttgtattttaattagttaggggaccaaaatcgcaactt 10169050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 16039742 - 16039779
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  16039742 ttgtattttaattagttaggggaccaaaatcgcaactt 16039779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 27756338 - 27756271
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactgctat 79  Q
    ||||||||||||||||||||||| |||||||||||||| ||| |||||||| | ||| |||||||||||    
T  27756338 attgtattttattttgttagggggccaaaatcgcaactacct-aatacttaaggggccaaaactgctat 27756271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 35793448 - 35793404
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaaa 55  Q
    ||||||||||||||||||||||| | |||||||||||||||||||    
T  35793448 attgtattttattttgttaggggcctaaaatcgcaacttcctaaa 35793404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 24432636 - 24432713
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactgctataaaaccttatt 90  Q
    |||||||||||||||||||| |  ||||||||||||| |||| |||||||| | ||| ||||||||||| ||||||||||    
T  24432636 attgtattttattttgttagtgagccaaaatcgcaac-tcct-aatacttaaggggccaaaactgctattaaaccttatt 24432713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 43657836 - 43657879
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaa 54  Q
    ||||||||||||||||||||||  ||||||||||||||||||||    
T  43657836 attgtattttattttgttagggtgccaaaatcgcaacttcctaa 43657879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 9477432 - 9477469
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||||||||||||||| |||||||||||||||    
T  9477432 ttgtattttattttgttagggggccaaaatcgcaactt 9477469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 47030351 - 47030310
Alignment:
Q  8 tgtattgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  47030351 tgtattgtattttattttgttatgggatcaaaatcgcaactt 47030310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 9500149 - 9500210
Alignment:
Q  17 ttttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactgctat 79  Q
    |||| |||| |||||||||||||||||||||||| | || ||||| | |||||||||||||||    
T  9500149 tttttttttcttaggggaccaaaatcgcaacttcttgaa-acttagggggctaaaactgctat 9500210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 24679086 - 24679120
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaa 46  Q
    |||||||||||||||||||||| ||||||||||||    
T  24679086 ttgtattttattttgttagggggccaaaatcgcaa 24679120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 30283478 - 30283440
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  30283478 ttgtattttattttgttatggggccaaaatcgcaacttc 30283440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 3354926 - 3354965
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3354926 attgtattttattttgttaggggaccaaaatcgcaacttc 3354965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 1807645 - 1807685
Alignment:
Q  15 tattttattttgttaggggaccaaaatcgcaacttcctaaa 55  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  1807645 tattttattttgttaggggaccaaaatcgcaacttcttaaa 1807685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 49579153 - 49579191
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  49579153 attgtattttattttgttaggggactaaaatcgcaactt 49579191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 50420862 - 50420929
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactgctat 79  Q
    ||||| ||||||||||||| |||  ||||||||||||||| | |||||||| ||||| |||||||||||    
T  50420862 attgtgttttattttgttaaggggtcaaaatcgcaacttcat-aatacttaggaggccaaaactgctat 50420929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 3354822 - 3354752
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactgctataaa 82  Q
    ||||||||||||||| ||||| | |||||||||||| |||||  ||||||| | ||| ||||||||||||||    
T  3354822 attgtattttattttcttaggaggccaaaatcgcaatttcct-gatacttagggggccaaaactgctataaa 3354752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 43902604 - 43902561
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaa 54  Q
    ||||||||||||||||||| ||| |||||||| |||||||||||    
T  43902604 attgtattttattttgttaaggggccaaaatcacaacttcctaa 43902561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 53255266 - 53255332
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactgctat 79  Q
    ||||| ||||||| |||||||| |||||||||||||||| |||| || || ||||| |||||||||||    
T  53255266 ttgtagtttatttagttagggggccaaaatcgcaacttcttaaa-acataggaggccaaaactgctat 53255332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 17258172 - 17258210
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  17258172 ttgtattttaatttgttaggggtccaaaatcgcaacttc 17258210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 33687677 - 33687639
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  33687677 attgtattttattttgttagggggctaaaatcgcaactt 33687639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 40988670 - 40988632
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||||||||| || |||||||||||||||||||||||||    
T  40988670 ttgtattttaattagttaggggaccaaaatcgcaacttc 40988632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 47284533 - 47284570
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  47284533 ttgtattttaattagttaggggaccaaaatcgcaactt 47284570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 54716748 - 54716785
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  54716748 ttgtattttaattagttaggggaccaaaatcgcaactt 54716785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 26466041 - 26466001
Alignment:
Q  11 attgtattttattttgtta-ggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  26466041 attgtattttattttgttaggggggccaaaatcgcaacttc 26466001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 31227126 - 31227204
Alignment:
Q  8 tgtattgtattttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactgctataaaacctt 87  Q
    ||||||||||||||||||||||| ||  |||||||||||||||||  ||| ||| ||||| ||||||||||| |||||||    
T  31227126 tgtattgtattttattttgttagagggtcaaaatcgcaacttcct-gatatttaggaggccaaaactgctattaaacctt 31227204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 14289338 - 14289299
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  14289338 attgtattttattttgttagggggccaaaatcgcaacttc 14289299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 23993900 - 23993974
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactgctataaaacct 86  Q
    ||||||||||||||||||||||| ||||||| ||||||| || |||||||| |  || ||||||||||| ||||||    
T  23993900 attgtattttattttgttagggggccaaaattgcaactt-cttaatacttagggagccaaaactgctattaaacct 23993974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 35500333 - 35500371
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  35500333 ttgtattttattttgttagggggccaaaatcgcaacttc 35500371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 14983942 - 14983985
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcctaaa 55  Q
    |||||||||| || ||||||||||||||||||||||||| ||||    
T  14983942 ttgtattttaattagttaggggaccaaaatcgcaacttcttaaa 14983985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 29370788 - 29370745
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcctaaa 55  Q
    |||||||||||||||| |||||| ||||||||||||||| ||||    
T  29370788 ttgtattttattttgtcaggggatcaaaatcgcaacttcttaaa 29370745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 35180527 - 35180564
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  35180527 ttgtattttaatttgttagggggccaaaatcgcaactt 35180564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 37343724 - 37343687
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  37343724 ttgtattttaattagttaggggaccaaaatcgcaactt 37343687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 13491554 - 13491526
Alignment:
Q  7 atgtattgtattttattttgttaggggac 35  Q
    |||||||||||||||||||||||||||||    
T  13491554 atgtattgtattttattttgttaggggac 13491526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 33122859 - 33122903
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaaa 55  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||    
T  33122859 attgtattttattttgtttggggatcaaaatcgcaacttcctaaa 33122903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 3369920 - 3369881
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  3369920 attgtattttattttgttagggggccaaaatcgcaacttc 3369881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 37831654 - 37831581
Alignment:
Q  22 ttttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactgctataaaaccttattaatatt 96  Q
    |||| ||||||| |||||||||||||||| |||| ||||| | ||||||||||||||| ||||| |||| |||||    
T  37831654 ttttcttagggggccaaaatcgcaacttcttaaa-acttagggggctaaaactgctattaaaccatatttatatt 37831581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 52865451 - 52865377
Alignment:
Q  13 tgtattttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactgctataaaacctta 88  Q
    |||| ||| |||| |||| ||||||||||||||||||| |||| ||||| | |||| |||||||||| ||||||||    
T  52865451 tgtagttttttttcttagaggaccaaaatcgcaacttcttaaa-acttatggggctgaaactgctattaaacctta 52865377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 53831224 - 53831181
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcctaaa 55  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||    
T  53831224 ttgtagtttatttagttaggggaccaaaatcgcaacttcttaaa 53831181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 49804338 - 49804376
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  49804338 ttgtattttatttttttaggggatcaaaatcgcaacttc 49804376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 26858416 - 26858379
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  26858416 ttgtattttaattagttaggggaccaaaatcgcaactt 26858379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 47742303 - 47742219
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactgctataaaaccttattaatatta 97  Q
    ||||| ||||||| |||||||| |||||||||||||||||| || || || | ||  ||||||||||| |||||| || |||||||    
T  47742303 ttgtagtttatttagttagggggccaaaatcgcaacttcctgaa-acataggtggacaaaactgctattaaacctaataaatatta 47742219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 13825947 - 13825881
Alignment:
Q  17 ttttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactgctataaaacc 85  Q
    |||| |||| ||||||| |||||||||||||||| |||| ||||| | ||||||||||||||| |||||    
T  13825947 tttttttttcttaggggcccaaaatcgcaacttcttaaa-actta-ggggctaaaactgctattaaacc 13825881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 16323050 - 16322987
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactg 75  Q
    ||||||||||||||||||| |||  |||||||||||||| || |||||||| | ||| |||||||    
T  16323050 attgtattttattttgttatggggtcaaaatcgcaactt-cttaatacttaaggggccaaaactg 16322987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 19938563 - 19938603
Alignment:
Q  7 atgtattgtattttattttgttaggggaccaaaatcgcaac 47  Q
    |||| ||||||||||||| |||||||| |||||||||||||    
T  19938563 atgttttgtattttatttagttagggggccaaaatcgcaac 19938603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1088 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1088
Description:

Target: scaffold1088; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 2111 - 2154
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaa 54  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  2111 attgtattttattttgttagggggccaaaatcgcaactttctaa 2154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 162281 - 162351
Alignment:
Q  8 tgtattgtattttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactgctat 79  Q
    |||||||||||||||||||||||||| |||||||| || |||||  |||||||| | ||| |||||||||||    
T  162281 tgtattgtattttattttgttagggggccaaaatcacatcttcc-caatacttaaggggccaaaactgctat 162351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 8409807 - 8409850
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcctaaa 55  Q
    |||||||||||||||||||||| |||||||||||||||| ||||    
T  8409807 ttgtattttattttgttaggggcccaaaatcgcaacttcttaaa 8409850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 29196604 - 29196647
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcctaaa 55  Q
    ||||||||||||||||||| |||||| |||||||||||| ||||    
T  29196604 ttgtattttattttgttagaggaccataatcgcaacttcttaaa 29196647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 29219149 - 29219106
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaa 54  Q
    ||||||||||||||| ||||||||| |||||| |||||||||||    
T  29219149 attgtattttattttattaggggactaaaatcacaacttcctaa 29219106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 29219364 - 29219407
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaa 54  Q
    ||||||| ||||||||||||||| | ||||||||||||||||||    
T  29219364 attgtatattattttgttagggggctaaaatcgcaacttcctaa 29219407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 45522433 - 45522476
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcctaaa 55  Q
    |||||||||||||||||||||| | |||||||||||||| ||||    
T  45522433 ttgtattttattttgttagggggctaaaatcgcaacttcttaaa 45522476  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 5645767 - 5645805
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  5645767 ttgtattttattttgttagggggccaaaatcacaacttc 5645805  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 8951112 - 8951039
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactgctataaaacct 86  Q
    |||||||||| || ||||||||||||||||| ||||||| |||| || || |||||||||| ||| || ||||||    
T  8951112 ttgtattttaattggttaggggaccaaaatcacaacttcttaaa-acataggaggctaaaagtgcaattaaacct 8951039  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 9498987 - 9498941
Alignment:
Q  6 catgtattgtattttattttgttaggggaccaaaatcgcaacttcct 52  Q
    |||| ||||||||||||||||||| |||  |||||||||||||||||    
T  9498987 catgaattgtattttattttgttatggggtcaaaatcgcaacttcct 9498941  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 5899283 - 5899242
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcct 52  Q
    ||||||||||||||||||||||  || |||||||||||||||    
T  5899283 attgtattttattttgttagggagccgaaatcgcaacttcct 5899242  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 7477409 - 7477372
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  7477409 ttgtattttaattagttaggggaccaaaatcgcaactt 7477372  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 9234721 - 9234762
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcct 52  Q
    ||||||||||| |||||||| || ||||||||||||||||||    
T  9234721 attgtattttaatttgttagagggccaaaatcgcaacttcct 9234762  T

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Target: scaffold0092 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 37856 - 37792
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactgct 77  Q
    |||||||||||||||||||||||  |||||||||||||||||  ||||||| | |||||||||||||    
T  37856 attgtattttattttgttagggg-tcaaaatcgcaacttcct-gatacttagggggctaaaactgct 37792  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 29816410 - 29816451
Alignment:
Q  8 tgtattgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  29816410 tgtattgtattttattttgtt-ggggaccaaaatcgcaacttc 29816451  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 37008289 - 37008251
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaacttc 50  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  37008289 ttgtattttattttgttagggggccaaaatcgcaacttc 37008251  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 13575143 - 13575209
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactgctat 79  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||  ||||||| | |||||||||||||||    
T  13575143 attgtattttattttgttatggg-ccaaaatcgcatcttcct-gatacttagggggctaaaactgctat 13575209  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 367161 - 367196
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaac 47  Q
    |||||||||||||||||||||| |||||||||||||    
T  367161 ttgtattttattttgttagggggccaaaatcgcaac 367196  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 22347590 - 22347547
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaa 54  Q
    ||||||||||||||||||||||||  |||| |||||||||||||    
T  22347590 attgtattttattttgttaggggagtaaaagcgcaacttcctaa 22347547  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 1484664 - 1484737
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactgctataaaacc 85  Q
    ||||||||||| |||||||||||  ||||||| ||||||||| ||||||||   ||| ||||||||||| |||||    
T  1484664 attgtattttactttgttagggggtcaaaatcacaacttcct-aatacttagagggccaaaactgctattaaacc 1484737  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 13344417 - 13344454
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  13344417 ttgtattttaattagttaggggaccaaaatcgcaactt 13344454  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 1484439 - 1484403
Alignment:
Q  15 tattttattttgttaggggaccaaaatcgcaacttcc 51  Q
    |||||||||||||||| || |||||||||||||||||    
T  1484439 tattttattttgttagagggccaaaatcgcaacttcc 1484403  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 10231117 - 10231180
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactg 75  Q
    |||||||||||||||||||| || ||||||||| ||||| || |||||||| | ||| |||||||    
T  10231117 attgtattttattttgttagagggccaaaatcgaaactt-cttaatacttagggggccaaaactg 10231180  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 10532498 - 10532565
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactgctat 79  Q
    |||||||||||||||||| | || ||||||||| |||||||| ||||| || | ||| |||||||||||    
T  10532498 attgtattttattttgttggagggccaaaatcgtaacttcct-aatacatagggggccaaaactgctat 10532565  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 31651406 - 31651332
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcctaaatacttacgaggctaaaactgctataaaacctt 87  Q
    |||| |||||||||||||| || |||||||||||||||| || |||||||| | ||| ||| ||||||| |||||||    
T  31651406 attgaattttattttgttaagg-accaaaatcgcaactttct-aatacttatggggccaaagctgctattaaacctt 31651332  T

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Target: scaffold0286 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 17711 - 17670
Alignment:
Q  11 attgtattttattttgttaggggaccaaaatcgcaacttcct 52  Q
    ||||||||||||||||||||||   |||||||||||||||||    
T  17711 attgtattttattttgttagggtgtcaaaatcgcaacttcct 17670  T

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Target: scaffold0047 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 63107 - 63070
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  63107 ttgtattttaattagttaggggaccaaaatcgcaactt 63070  T

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Target: scaffold0047; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 63305 - 63342
Alignment:
Q  12 ttgtattttattttgttaggggaccaaaatcgcaactt 49  Q
    |||||||||| || ||||||||||||||||||||||||    
T  63305 ttgtattttaattagttaggggaccaaaatcgcaactt 63342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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