View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928-Insertion-13 (Length: 515)
Name: NF4928-Insertion-13
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928-Insertion-13 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 8 - 501
Target Start/End: Complemental strand, 41963836 - 41963343
Alignment:
| Q |
8 |
ttaatatctctatgaaccactctttgctcacattcctgatgaagataaaccaatacagaagccaaaccgacaacaatattatacctaatagaccaagtca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41963836 |
ttaatatctctatgaaccactctttgctcacattcctgatgaagataaaccaatacagaagccaaaccaacaacaatattatacctaatagaccaagtca |
41963737 |
T |
|
| Q |
108 |
acaatttccctctctcaggttctttgtaaagcatcttgtctaagcttccattaggcatgaaatcataaacaagaagcaactcacttttctcaacacacca |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||| |
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| T |
41963736 |
acaatttccctctctcaggttctttgtaaagcatcttgtctaagcttccattaggcatgaaatcataaaaaagaagcaactcacctttctcaacagacca |
41963637 |
T |
|
| Q |
208 |
acccgacaactgagccaaattcttgcgccttaaaccagcaatgatgttcaattcagagagaaactcggtctttccttcatgtgaatgcctcgatcttttc |
307 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41963636 |
acccaacaactgagccaaattcttgtgccttaaaccagcaatgatgttcaattcagagagaaactcggtctttccttcatgtgaatgcctcgatcttttc |
41963537 |
T |
|
| Q |
308 |
actgcagcaatggttccagacgatataaagaacgctttatacacagttccaaacgaaccgtgaccaacaatcctactcggatgaaactctcttgtagccg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41963536 |
actgcagcaatggttccagacgatataaagaacgctttatacacagttccaaatgaaccgtgaccaacaatcctgctcggatgaaactctcttgtagccg |
41963437 |
T |
|
| Q |
408 |
atttcaattctctgtaactaaactccctaggccaagcaacaaacccagtttgaaaattcttcgacaccccttttctcacacctttccatttcat |
501 |
Q |
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| T |
41963436 |
atttcaattctctgtaactaaactccctaggacaagcaacaaacccagtttgaaaattcttcgacaccccttttctcacacctttccatttcat |
41963343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 8 - 501
Target Start/End: Complemental strand, 1225289 - 1224799
Alignment:
| Q |
8 |
ttaatatctctatgaaccactctttgctcacattcctgatgaagataaaccaatacagaagccaaaccgacaacaatattatacctaatagaccaagtca |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1225289 |
ttaatatctctatgaaccactctttgctcacattcctgatgaa---aaaccaatacagaagccaaaccaacaacaatattatacctaatagaccaagtca |
1225193 |
T |
|
| Q |
108 |
acaatttccctctctcaggttctttgtaaagcatcttgtctaagcttccattaggcatgaaatcataaacaagaagcaactcacttttctcaacacacca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1225192 |
acaatttccctctctcaggttctttgtaaagcatcttgtctaagcttccattaggcatgaaatcataaacaagaagcaactcacctttctcaacacacca |
1225093 |
T |
|
| Q |
208 |
acccgacaactgagccaaattcttgcgccttaaaccagcaatgatgttcaattcagagagaaactcggtctttccttcatgtgaatgcctcgatcttttc |
307 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1225092 |
acccaacaactgagccaaattcttgtgccttaaaccagcaatgatgttcaattcagagagaaactcggtctttccttcatgtgaatgcctcgatcttttc |
1224993 |
T |
|
| Q |
308 |
actgcagcaatggttccagacgatataaagaacgctttatacacagttccaaacgaaccgtgaccaacaatcctactcggatgaaactctcttgtagccg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1224992 |
actgcagcaatggttccagacgatataaagaacgctttatacaaagttccaaacgaaccgtgaccaacaatcctactcggatgaaactctcttgtagccg |
1224893 |
T |
|
| Q |
408 |
atttcaattctctgtaactaaactccctaggccaagcaacaaacccagtttgaaaattcttcgacaccccttttctcacacctttccatttcat |
501 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1224892 |
atttcaattctctgtaactaaactccctaggacaagcaacaaacccagtttgaaaattcttcgacaccccttttctcacacctttccatttcat |
1224799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 23915118 - 23915042
Alignment:
| Q |
8 |
ttaatatctctatgaaccactctttgctcacattcctgatgaagataaaccaatacagaagccaaaccgacaacaat |
84 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| ||||| | |||| | || ||||||||||| || |||||||| |
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| T |
23915118 |
ttaatatctctatgaatcactctttgctcacattcttgatgcaaataagctaaaacagaagccaaccctacaacaat |
23915042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 317
Target Start/End: Complemental strand, 23914950 - 23914803
Alignment:
| Q |
170 |
tcataaacaagaagcaactcacttttctcaacacaccaacccgacaactgagccaaattcttgcgccttaaaccagcaatgatgttcaattcagagagaa |
269 |
Q |
| |
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||||| ||||| | ||| |||| |||||||||||||||||| | | ||| ||||||||||| ||||||||||||| || || || || || | || |
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| T |
23914950 |
tcatacacaagtaacaattcacctttctcaacacaccaacctaaaagttgaaccaaattcttgtgccttaaaccagctataatcgataactcggataaaa |
23914851 |
T |
|
| Q |
270 |
actcggtctttccttcatgtgaatgcctcgatcttttcactgcagcaa |
317 |
Q |
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||||||| ||||||||||||||||| || |||||||| || ||||||| |
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| T |
23914850 |
actcggtttttccttcatgtgaatgtcttgatcttttaacagcagcaa |
23914803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 37271 - 37234
Alignment:
| Q |
143 |
ttgtctaagcttccattaggcatgaaatcataaacaag |
180 |
Q |
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||||||||||||||||| |||||||| ||||||||||| |
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| T |
37271 |
ttgtctaagcttccatttggcatgaactcataaacaag |
37234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 22839292 - 22839344
Alignment:
| Q |
143 |
ttgtctaagcttccattaggcatgaaatcataaacaagaagcaactcactttt |
195 |
Q |
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|||||||| |||||||| |||||| |||||||||| | ||| ||||||||||| |
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| T |
22839292 |
ttgtctaaacttccattcggcatgtaatcataaaccaaaagtaactcactttt |
22839344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 22897509 - 22897557
Alignment:
| Q |
143 |
ttgtctaagcttccattaggcatgaaatcataaacaagaagcaactcac |
191 |
Q |
| |
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||||||| ||||||||||||||| ||||||| || ||||||||||||| |
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| T |
22897509 |
ttgtctagacttccattaggcatgtaatcatagaccagaagcaactcac |
22897557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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