View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4928-Insertion-14 (Length: 975)
Name: NF4928-Insertion-14
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928-Insertion-14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 8 - 447
Target Start/End: Complemental strand, 40080212 - 40079777
Alignment:
| Q |
8 |
ggatattcctgcgacagcgatgttgaaagctcgcttaccactgcggttaatggtgcggaggtcgagctcaagacctacgaggaagagatagaagagaagg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40080212 |
ggatattcctgcgacagcgatgttgaaagctcgcttaccactgcggttaatggtgcggaggtcgagctcaagacctacgaggaagagatagaagagaagg |
40080113 |
T |
|
| Q |
108 |
ccaatgctagctactgattcaagtatgggagtgctccatgaagggaaaaccgtgtgcatgaaagttttgttgcgtccaataccagaaggtcctagcaaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40080112 |
ccaatgctagctactgattcaagtatgggagtgctccatgaagggaaaaccgtgtgcatgaaagttttgttgcgtccaataccagaaggtcctagcaaaa |
40080013 |
T |
|
| Q |
208 |
ttcctccctgaatcacatgaatcataattatcaattatagatgttatgctaactctatgcagttgatcataattcttttgaaacatttgtgttgtacaga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| | |
|
|
| T |
40080012 |
ttcctccctgaatcacatgaatcataat----cattatagatgttatgctaactctatgcagttgatcataattcttttgaaacatatgtgctgtacata |
40079917 |
T |
|
| Q |
308 |
attagatcaaatcttttagtcaaaactacatcccgcagctgtttaattttaccacattagttaattaagtttcnnnnnnngtctcacataggttgctttt |
407 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
40079916 |
attagatcaaatcttttagccaaaactacatcccgcagctgtttaattttaccacattagttaattaagtttctttttttgtctcacataggttactttt |
40079817 |
T |
|
| Q |
408 |
tattcacacattatgttgcaaacatacatgtgtacatcat |
447 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40079816 |
tattcacacattctgttgcaaacatacatgtgtacatcat |
40079777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 431 - 750
Target Start/End: Complemental strand, 40079758 - 40079418
Alignment:
| Q |
431 |
atacatgtgtacatcatgttattgacgtgatataaatcatgttgagaacatttgttacatgtattcatttctcatctcttaccttttgctcattttagaa |
530 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40079758 |
atacatgtgtacatcatgttattgacgtgatataaatcatgttgagaacatttgttacatgtattcatttctcatctgttaccttttgctcattttagaa |
40079659 |
T |
|
| Q |
531 |
ttgggttaatgattt-gaggcaactattgcgcgcgagaaaaggaattgggggaattttcctccatgatttttccgtccatttgacacaaatatatttgaa |
629 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40079658 |
ttgggttaatgattttgaggcaactattgcgcgagagaaaaggaattgggggaattttcctccatgattttcccgtccatttgacacaaatatatttgaa |
40079559 |
T |
|
| Q |
630 |
gatcatgtgtccattcatattctctaccacgcaatattcgtatcaaatggtttaacataattttaaaatcaac--------------------taaatcc |
709 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40079558 |
ggtcatgtgcccattcatattctctaccacgcaatattcgtatcaaatggtttaacataattttaaaatcaacaatgatacatgtacatttcataaatcc |
40079459 |
T |
|
| Q |
710 |
taacactcattcgacacttcatttatctctacaaatcttct |
750 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40079458 |
taacactcattcgacacttcatttatctctacaaatcttct |
40079418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 792 - 974
Target Start/End: Complemental strand, 40079398 - 40079221
Alignment:
| Q |
792 |
atatgttgtgtgcatcaaacatttccttttgagatagacaagaggtacacataaagagatggaaatggatacatgtaattaaggttagcagcaaacttcg |
891 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40079398 |
atatgttgtgtacatcaaacatttccttttgagatagacaagaggtacacataa-gagatggaaatggatacatgtaattaaggttagcagcaaacttcg |
40079300 |
T |
|
| Q |
892 |
ttcctgcaacgtcaacaacataacaaaccacatgcatattttttaataacgaaatggcgtgaaaaattggtaacggtatgcac |
974 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40079299 |
ttcctgcaacgtcaacaacataacaaa-cacatgcatattttt--attacgaaat-gcgtgaaaaattggtaacggtatgcac |
40079221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University