View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4928-Insertion-17 (Length: 553)
Name: NF4928-Insertion-17
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928-Insertion-17 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 8 - 553
Target Start/End: Complemental strand, 28430928 - 28430383
Alignment:
| Q |
8 |
aattaagcctaaaaagaattcaaaaattgatcataattactctaatatagtagatacatacctgcatttgatcttgttcactgctaacaacaaatgagtc |
107 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
28430928 |
aattaagcctaaaaagaattgaaaaattgatcataattactctaatatagtagatacatacctgcatttgatcttgttcactgctaaccacaaatgagtc |
28430829 |
T |
|
| Q |
108 |
agctccaagaagttcaatagcttccttctttttgttaggagaagtgctaatcactgttaccttagcaccaaaagctttggcaaatttcacagccatatga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28430828 |
agctccaagaagttcaatagcttccttctttttgttaggagaagtgctaatcactgttaccttagcaccaaaagctttggcaaatttcacagccatatga |
28430729 |
T |
|
| Q |
208 |
ccaagtccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaaaatatttcaaagggctatacaccgtgatcccggcgcagaggagag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28430728 |
ccaagtccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaaaatatttcaaagggctatacaccgtgatcccggcgcagaggagag |
28430629 |
T |
|
| Q |
308 |
gagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtgaccattgtgtcggagtagcctccatatgtgatggtgccatc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28430628 |
gagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtgaccattgtgtcggagtagcctccatatgtgatggtgccatc |
28430529 |
T |
|
| Q |
408 |
aagattcttggaaccgtatgtgagaatcacttttggacagtaattttcgagactttcgttgcaattttggcatgagtggcaggattgaaccatgcaccca |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28430528 |
aagattcttggaaccgtatgtgagaatcacttttggacagtaattttcgagactttcgttgcaattttggcatgagtggcaggattgaaccatgcaccca |
28430429 |
T |
|
| Q |
508 |
acacctaccttgtctccaactttgaatttttgtaccttgtctccca |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28430428 |
acacctaccttgtctccaactttgaatttttgtaccttgtctccca |
28430383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 67 - 533
Target Start/End: Original strand, 13373003 - 13373469
Alignment:
| Q |
67 |
acctgcatttgatcttgttcactgctaacaacaaatgagtcagctccaagaagttcaatagcttccttctttttgttaggagaagtgctaatcactgtta |
166 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
13373003 |
acctgcatttggtcttgttcgtggctaaccacaaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgtta |
13373102 |
T |
|
| Q |
167 |
ccttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaaaata |
266 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| | || || ||| || | |||||||||||| |
|
|
| T |
13373103 |
cattagcaccaaaagctttggtaaatttcacagccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaata |
13373202 |
T |
|
| Q |
267 |
tttcaaagggctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtg |
366 |
Q |
| |
|
||||||||||||||| || |||||||| || || || |||||||| || |||||||| |||| | || ||||| | |||||| ||| ||||| || |
|
|
| T |
13373203 |
tttcaaagggctatatactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaatacggatcacgaagtgttcgtgggca |
13373302 |
T |
|
| Q |
367 |
accattgtgtcggagtagcctccatatgtgatggtgccatcaagattcttggaaccgtatgtgagaatcacttttggacagtaattttcgagactttcgt |
466 |
Q |
| |
|
||||| || || |||||||||||||||||||| || ||||||| |||||||| || |||||||| |||| |||| || ||||| |||||| || |
|
|
| T |
13373303 |
accatggtatcagagtagcctccatatgtgattgttccatcaatattcttggcgccatatgtgaggatcatctttgagcaataattctcgagatcatcac |
13373402 |
T |
|
| Q |
467 |
tgcaattttggcatgagtggcaggattgaaccatgcacccaacacctaccttgtctccaactttgaa |
533 |
Q |
| |
|
||| |||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13373403 |
cacaactttgacatgagtggcaggatccaaccatgcaccctacacctaccttgtctccaactttgaa |
13373469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 91 - 532
Target Start/End: Original strand, 13378823 - 13379264
Alignment:
| Q |
91 |
ctaacaacaaatgagtcagctccaagaagttcaatagcttccttctttttgttaggagaagtgctaatcactgttaccttagcaccaaaagctttggcaa |
190 |
Q |
| |
|
||||| || |||||||||||||| | ||||||| |||||||||||||||||||||||||| || | ||| ||||||||| ||||||| |||||||| | |
|
|
| T |
13378823 |
ctaaccacgaatgagtcagctcctaagcgttcaatggcttccttctttttgttaggagaagtacttaccacagttaccttaacaccaaaggctttggcga |
13378922 |
T |
|
| Q |
191 |
atttcacagccatatgaccaagtccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaaaatatttcaaagggctatacaccgtgat |
290 |
Q |
| |
|
| ||||||||||||||||| | ||||||||||||||||||||||| |||| |||||| |||| |||||||| ||||| ||||||||||| ||||| |
|
|
| T |
13378923 |
acttcacagccatatgacctaatccaccaagaccaaccacacctatatgcagtccaggtttgtcaaatccaaaatgtttcattgggctatacactgtgat |
13379022 |
T |
|
| Q |
291 |
cccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtgaccattgtgtcggagtagcctcca |
390 |
Q |
| |
|
||| || || ||||||||||| ||||||||||| | || | || ||||| | || | |||| ||||||| ||||| ||||| |||||||||||| |
|
|
| T |
13379023 |
cccagcacaaaggagaggagcggcagcatcaagtgataaggcatcgggaatacggacaataaagtgttcgtcgacaaccatggtgtcagagtagcctcca |
13379122 |
T |
|
| Q |
391 |
tatgtgatggtgccatcaagattcttggaaccgtatgtgagaatcacttttggacagtaattttcgagactttcgttgcaattttggcatgagtggcagg |
490 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |||||| |||||| |||| || |||||||||||| ||| ||| |||| ||||| ||||||| |
|
|
| T |
13379123 |
tatgtgatagtgccatcaacattcttggaactgtatgtctgaatcatctttgagcaataattttcgagatcctcgccacaactttgacatgaatggcagg |
13379222 |
T |
|
| Q |
491 |
attgaaccatgcacccaacacctaccttgtctccaactttga |
532 |
Q |
| |
|
|| |||||||||||| ||||| ||| | ||||||||||||| |
|
|
| T |
13379223 |
atccaaccatgcaccccacaccaaccctatctccaactttga |
13379264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 103 - 408
Target Start/End: Original strand, 13419297 - 13419602
Alignment:
| Q |
103 |
gagtcagctccaagaagttcaatagcttccttctttttgttaggagaagtgctaatcactgttaccttagcaccaaaagctttggcaaatttcacagcca |
202 |
Q |
| |
|
||||||||||| | |||| || |||||||| | ||||| ||| || || ||||| || || || |||||||| |||||||| |||||||||||||||| |
|
|
| T |
13419297 |
gagtcagctcccaagtgttctattgcttccttttctttgtgaggcgatgtactaattacggtcacattagcaccgaaagcttttgcaaatttcacagcca |
13419396 |
T |
|
| Q |
203 |
tatgaccaagtccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaaaatatttcaaagggctatacaccgtgatcccggcgcagag |
302 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||| | || ||| || || ||| |||||| | | ||| |||||||| ||||| || ||||| || |
|
|
| T |
13419397 |
tatggccaagtccaccaagaccaacaacacctatattcataccaggcttgtcgagttcaaaatgtcgaagaggactatacactgtgattccagcgcaaag |
13419496 |
T |
|
| Q |
303 |
gagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtgaccattgtgtcggagtagcctccatatgtgatggtg |
402 |
Q |
| |
|
|||||| | |||||||||||||||| ||||| ||||||| ||||||||| ||||| | ||||||| ||||||||| ||||||||||||| |||| |
|
|
| T |
13419497 |
aagaggaccggcagcatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtgacggtg |
13419596 |
T |
|
| Q |
403 |
ccatca |
408 |
Q |
| |
|
|||||| |
|
|
| T |
13419597 |
ccatca |
13419602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 65 - 227
Target Start/End: Original strand, 13426150 - 13426312
Alignment:
| Q |
65 |
atacctgcatttgatcttgttcactgctaacaacaaatgagtcagctccaagaagttcaatagcttccttctttttgttaggagaagtgctaatcactgt |
164 |
Q |
| |
|
|||||||||| |||||| | || | ||| || | ||| ||||||||||| | | |||| || |||||||| | |||| |||| || || ||||| ||||| |
|
|
| T |
13426150 |
atacctgcatctgatctggatcgcggcttactagaaacgagtcagctcctaaatgttctatcgcttccttttctttgctaggcgatgtactaattactgt |
13426249 |
T |
|
| Q |
165 |
taccttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaac |
227 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13426250 |
tacattagcaccaaaagctttggcgaatttcacagccatatgaccaagtccaccaagaccaac |
13426312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 169 - 408
Target Start/End: Original strand, 13446914 - 13447153
Alignment:
| Q |
169 |
ttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaaaatatt |
268 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| | || ||| || || |||||||||| | |
|
|
| T |
13446914 |
ttagcaccaaaagctttagcaaatttcacagccatatgaccaagtccaccaagaccaacaactcctatattcataccaggcttgtcgagtccaaaatgtc |
13447013 |
T |
|
| Q |
269 |
tcaaagggctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtgac |
368 |
Q |
| |
|
| ||| |||||||| |||| || ||||| || |||||| | ||| |||||||||||| ||||| ||||||| ||||||||| ||||| | || |
|
|
| T |
13447014 |
gaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaac |
13447113 |
T |
|
| Q |
369 |
cattgtgtcggagtagcctccatatgtgatggtgccatca |
408 |
Q |
| |
|
||||| ||||||| | |||||||| ||||| ||||||||| |
|
|
| T |
13447114 |
cattgagtcggagaaacctccataggtgatagtgccatca |
13447153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 13412976 - 13413084
Alignment:
| Q |
127 |
gcttccttctttttgttaggagaagtgctaatcactgttaccttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaa |
226 |
Q |
| |
|
|||||||| | ||||||||| || || ||||| || || || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13412976 |
gcttccttttctttgttaggcgatgtactaattacggtaacattagcaccgaaagctttggcaaatttcacagccatatggccaagtccaccaagaccaa |
13413075 |
T |
|
| Q |
227 |
ccacaccta |
235 |
Q |
| |
|
| ||||||| |
|
|
| T |
13413076 |
caacaccta |
13413084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 127 - 328
Target Start/End: Complemental strand, 13389426 - 13389225
Alignment:
| Q |
127 |
gcttccttctttttgttaggagaagtgctaatcactgttaccttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaa |
226 |
Q |
| |
|
||||| |||| |||||| || || || |||||||||||||| | |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
13389426 |
gcttctttctctttgttgggtgatgtactaatcactgttacaatcgcaccaaatgctttggcaaatttcacagccatgtgaccaagcccaccaagaccaa |
13389327 |
T |
|
| Q |
227 |
ccacacctaattgcaagttaggtttatcaagtccaaaatatttcaaagggctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagagg |
326 |
Q |
| |
|
| ||||||| | | ||||||||| |||||| ||||| | | ||| || ||||| |||||||| || || |||||||| || ||||| ||||| || |
|
|
| T |
13389326 |
caacacctatacgaagaccaggtttatcgagtccataatatctaagaggactgtacacagtgatcccagcacaaaggagaggtgcagcagcttcaagtgg |
13389227 |
T |
|
| Q |
327 |
ta |
328 |
Q |
| |
|
|| |
|
|
| T |
13389226 |
ta |
13389225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 13385605 - 13385499
Alignment:
| Q |
127 |
gcttccttctttttgttaggagaagtgctaatcactgttaccttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaa |
226 |
Q |
| |
|
|||||||| | |||| ||| ||| || ||||| || || || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
13385605 |
gcttccttttctttgctagcagatgtactaattacggtcacattagcaccaaaagctttggcaaatttcacagccatgtgaccaagcccaccaagaccaa |
13385506 |
T |
|
| Q |
227 |
ccacacc |
233 |
Q |
| |
|
| ||||| |
|
|
| T |
13385505 |
caacacc |
13385499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 169 - 538
Target Start/End: Original strand, 13453867 - 13454236
Alignment:
| Q |
169 |
ttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaaaatatt |
268 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||||| | || | ||| || || |||||||||| | |
|
|
| T |
13453867 |
ttagcaccgaaagctttggcgaatttcacggccatatggccaagtccaccaagaccaacaacacctatattcatatcaggcttgtcgagtccaaaatgtc |
13453966 |
T |
|
| Q |
269 |
tcaaagggctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtgac |
368 |
Q |
| |
|
| ||| ||||| || || ||||| || || ||||||||||| || ||||||||||||| || |||||||| | ||||||| ||||||| || |
|
|
| T |
13453967 |
gaagaggactatatacggttatcccagcacaaaggagaggagcagctgcatcaagaggtaactgatctggaatgcgaaacacaaagtgctcgtcggaaac |
13454066 |
T |
|
| Q |
369 |
cattgtgtcggagtagcctccatatgtgatggtgccatcaagattcttggaaccgtatgtgagaatcacttttggacagtaattttcgagactttcgttg |
468 |
Q |
| |
|
||||| ||| ||| ||||||||| ||| |||| |||||| | |||||||| | ||||| ||| || ||||||||||| || ||| | || |
|
|
| T |
13454067 |
cattgagtcagagaagcctccatgagtgctggttccatcactgtatttggaaccatcagtgagtgtcaattggggacagtaattctcaagattatcaaca |
13454166 |
T |
|
| Q |
469 |
caattttggcatgagtggcaggattgaaccatgcacccaacacctaccttgtctccaactttgaattttt |
538 |
Q |
| |
|
|||||||| |||||||| || || | ||||| ||| || |||||||| |||||||||||||||| |||| |
|
|
| T |
13454167 |
caattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttt |
13454236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 66 - 227
Target Start/End: Complemental strand, 13393894 - 13393733
Alignment:
| Q |
66 |
tacctgcatttgatcttgttcactgctaacaacaaatgagtcagctccaagaagttcaatagcttccttctttttgttaggagaagtgctaatcactgtt |
165 |
Q |
| |
|
||||||||||| |||||| ||| || | || |||||| |||||||| || ||| || ||||| |||| |||||| || || || ||||| |||||| |
|
|
| T |
13393894 |
tacctgcattttatcttggtcatgacttataagaaatgaatcagctcctaggttttctattgcttctttctctttgttgggtgatgtactaattactgtt |
13393795 |
T |
|
| Q |
166 |
accttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaac |
227 |
Q |
| |
|
|| ||||| ||||||||||| ||||| |||||| ||| ||||||||||||||||||||||| |
|
|
| T |
13393794 |
acattagctccaaaagcttttgcaaacttcacacccaagtgaccaagtccaccaagaccaac |
13393733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 138 - 311
Target Start/End: Original strand, 47601154 - 47601327
Alignment:
| Q |
138 |
tttgttaggagaagtgctaatcactgttaccttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacacctaat |
237 |
Q |
| |
|
||||||||| || || ||||| || || || ||||| ||||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
47601154 |
tttgttaggtgatgtactaattacagtcacattagccccaaaagctttagcaaacttaacagccatgtgaccaagtccaccaagaccaacaacacctata |
47601253 |
T |
|
| Q |
238 |
tgcaagttaggtttatcaagtccaaaatatttcaaagggctatacaccgtgatcccggcgcagaggagaggagc |
311 |
Q |
| |
|
|||| ||||||||| |||||||||||| | ||| |||||||| ||||| ||||| || || |||||||| |
|
|
| T |
47601254 |
tgcataccaggtttatcgagtccaaaatatcgaagaggactatacactgtgataccggcacaaagaagaggagc |
47601327 |
T |
|
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