View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928-Insertion-20 (Length: 616)

Name: NF4928-Insertion-20
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928-Insertion-20
NF4928-Insertion-20
[»] chr1 (9 HSPs)
chr1 (10-616)||(32656536-32657144)
chr1 (211-516)||(32630786-32631098)
chr1 (362-516)||(32581716-32581870)
chr1 (131-286)||(32581524-32581665)
chr1 (533-616)||(32631172-32631252)
chr1 (56-128)||(32630681-32630753)
chr1 (555-614)||(32581948-32582004)
chr1 (533-616)||(32600059-32600139)
chr1 (441-506)||(32599901-32599965)
[»] chr8 (3 HSPs)
chr8 (365-458)||(41163515-41163608)
chr8 (85-236)||(41160941-41161095)
chr8 (362-445)||(41171327-41171410)


Alignment Details
Target: chr1 (Bit Score: 510; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 10 - 616
Target Start/End: Original strand, 32656536 - 32657144
Alignment:
Q  10 atccggtgttggtcactctagtggaaatcgtttctcatggccactgagataaaaacaagtgattagtgacgagtaaaaatgcagcaaacgacttgatttg 109  Q
    |||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||    
T  32656536 atccggcggtggtcactctagtggaaatcatttctcatggccactgagataaaaaccagtgattagtgacgagtaaaaatgcagcgaatgacttgatttg 32656635  T
Q  110 ggcaaggaaaaactgatggtagttggcatagggaaggaatccatgttggatgttggaggtggaaggtgagaggcagtgggggtgaagagtggtgaaggaa 209  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32656636 gacaaggaaaaactgatggtagttggcatagggaaggaatccatgttggatgttggaggtggaaggtgagaggcagtgggggtgaagagtggtgaaggaa 32656735  T
Q  210 atggaggaaatcccaaaagatagggaaaggaaatctccac--cagtttgcaaagttgagccccatgataacaagctaatatttgctctctgaaggcttca 307  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32656736 atggaggaaatcccaaaagatagggaaaggatatctccaccacagtttgcaaagttgagccccatgataacaagctaatatttgctctctgaaggcttca 32656835  T
Q  308 acatagttgatctctagtagaagaatgttcatgaaaagcaatnnnnnnnnnnnnctattccaaagtcaaagacctgccacaaataaactatttaaattta 407  Q
    ||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||| ||||    
T  32656836 acatagttgatctctagtagaagaatgttcatgaaaagcaataaaaaataaaaactattccaaagtcaaagacctgccacaaataaactatttaatttta 32656935  T
Q  408 acttacaaatgtctaaataaaaccataaacttcaaagtgctccgactaaacggctagggttacagcacaaatgtagtcgaaaagtgaaaacaaagtttta 507  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32656936 acttacaaatgtctaaataaaaccatacacttcaaagcgctccgactaaacggctagggttacagcacaaatgtagtcgaaaagtgaaaacaaagtttta 32657035  T
Q  508 cagcataaacagaatcacgaaagacaattaattgcggcttctccaatttcttcctcaaatggcggcttatcagactgttttgtctacttaaaatcaaagc 607  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32657036 cagcataaacagaatcacgtaagacaattaattgcagcttctccaatttcttcctcaaatggcggcttatcagactgttttgtctacttaaaatcaaagc 32657135  T
Q  608 attacttgt 616  Q
    |||||||||    
T  32657136 attacttgt 32657144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 211 - 516
Target Start/End: Original strand, 32630786 - 32631098
Alignment:
Q  211 tggaggaaatcccaaaagatagggaaaggaaatctccac--cagtttgcaaagttgagccccatgataacaagctaatatttgctctctgaaggcttcaa 308  Q
    |||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32630786 tggaggaaatcccaaaagatagggaaaggaaacctccacagcagtttgcaaagttgagccccatgataacaagctaatatttgctctctgaaggattcaa 32630885  T
Q  309 catagttgatctctagtagaagaatgttcatg------aaaagcaatnnnnnnnnnnnnctattccaaagtcaaagacctgccacaaataaactatttaa 402  Q
    |||||||||||||||||||||||||||| |||      ||||| ||             |||||||||||||||||||| |||||||||||||| |||||    
T  32630886 catagttgatctctagtagaagaatgttaatgaaaagaaaaagaaaaagaaaaaaaaaactattccaaagtcaaagacccgccacaaataaactttttaa 32630985  T
Q  403 atttaacttacaaatgtctaaataaaaccataaacttcaaagtgctccgactaaacggctagggttacagcacaaatgtagtcgaaaagtgaaaacaaag 502  Q
    ||||||||||||||||||||| ||||||| ||||||| |||| |||| ||||||||||||||  ||||||||| ||||   || ||||||||||||||||    
T  32630986 atttaacttacaaatgtctaactaaaaccgtaaacttgaaagcgctctgactaaacggctagttttacagcac-aatgctatccaaaagtgaaaacaaag 32631084  T
Q  503 ttttacagcataaa 516  Q
    ||||||||||||||    
T  32631085 ttttacagcataaa 32631098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 362 - 516
Target Start/End: Original strand, 32581716 - 32581870
Alignment:
Q  362 ctattccaaagtcaaagacctgccacaaataaactatttaaatttaacttacaaatgtctaaataaaaccataaacttcaaagtgctccgactaaacggc 461  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||||| ||||||| ||||| ||||||||||||||| |||| |||| |||||||||||    
T  32581716 ctattccaaagtcaaagacctggcacaaataaacttcttaaatttaacatacaaatatctaactaaaaccataaacttgaaagcgctctgactaaacggc 32581815  T
Q  462 tagggttacagcacaaatgtagtcgaaaagtgaaaacaaagttttacagcataaa 516  Q
    |||  ||||||||||||||  ||| ||||||||||  ||||||||||||||||||    
T  32581816 tagttttacagcacaaatgcggtccaaaagtgaaattaaagttttacagcataaa 32581870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 131 - 286
Target Start/End: Original strand, 32581524 - 32581665
Alignment:
Q  131 gttggcatagggaaggaatccatgttggatgttggaggtggaaggtgagaggcagtgggggtgaagagtggtgaaggaaatggaggaaatcccaaaagat 230  Q
    ||||| ||||||||||||||||||||   |||    |||||||||||| |||||||||  ||||||||||||||||||         |||||||||||||    
T  32581524 gttggtatagggaaggaatccatgtt---tgt----ggtggaaggtgataggcagtggcagtgaagagtggtgaagga---------aatcccaaaagat 32581607  T
Q  231 agggaaaggaaatctccac--cagtttgcaaagttgagccccatgataacaagctaat 286  Q
    |||||||||||| ||||||  || ||||||||||||||||||||||||||||||||||    
T  32581608 agggaaaggaaacctccaccacaatttgcaaagttgagccccatgataacaagctaat 32581665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 533 - 616
Target Start/End: Original strand, 32631172 - 32631252
Alignment:
Q  533 aattaattgcggcttctccaatttcttcctcaaatggcggcttatcagactgttttgtctacttaaaatcaaagcattacttgt 616  Q
    |||||||||| |||||| ||||||||||||||||||||   |||||| ||||||||||||||||||||||||||||||||||||    
T  32631172 aattaattgcagcttctacaatttcttcctcaaatggc---ttatcacactgttttgtctacttaaaatcaaagcattacttgt 32631252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 32630681 - 32630753
Alignment:
Q  56 agataaaaacaagtgattagtgacgagtaaaaatgcagcaaacgacttgatttgggcaaggaaaaactgatgg 128  Q
    ||||| |||| ||||||||||| ||||| ||||||| ||||| |||||||||||||| |||||||||||||||    
T  32630681 agatacaaaccagtgattagtggcgagttaaaatgcggcaaaagacttgatttgggcgaggaaaaactgatgg 32630753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 614
Target Start/End: Original strand, 32581948 - 32582004
Alignment:
Q  555 ttcttcctcaaatggcggcttatcagactgttttgtctacttaaaatcaaagcattactt 614  Q
    ||||||||||||||||   |||||| ||||||||||| ||||||||||||||||||||||    
T  32581948 ttcttcctcaaatggc---ttatcacactgttttgtcaacttaaaatcaaagcattactt 32582004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 533 - 616
Target Start/End: Original strand, 32600059 - 32600139
Alignment:
Q  533 aattaattgcggcttctccaatttcttcctcaaatggcggcttatcagactgttttgtctacttaaaatcaaagcattacttgt 616  Q
    ||||||| || |||||| ||| ||||| ||||||||||   |||||| ||||| |||||||||||||||||||| |||||||||    
T  32600059 aattaatagcagcttctacaagttctttctcaaatggc---ttatcacactgtcttgtctacttaaaatcaaagtattacttgt 32600139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 506
Target Start/End: Original strand, 32599901 - 32599965
Alignment:
Q  441 aaagtgctccgactaaacggctagggttacagcacaaatgtagtcgaaaagtgaaaacaaagtttt 506  Q
    |||| |||||||||||||||||| | ||||||||||||||  |||   ||||||||||||||||||    
T  32599901 aaagcgctccgactaaacggcta-gtttacagcacaaatgctgtcctgaagtgaaaacaaagtttt 32599965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 365 - 458
Target Start/End: Original strand, 41163515 - 41163608
Alignment:
Q  365 ttccaaagtcaaagacctgccacaaataaactatttaaatttaacttacaaatgtctaaataaaaccataaacttcaaagtgctccgactaaac 458  Q
    |||| ||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||    
T  41163515 ttcctaagtcaaagacctgccacaaataaaatttgtaaatttaacttacaaatgtctaaataaaaccataaacttgaaagcgcttcgactaaac 41163608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 85 - 236
Target Start/End: Original strand, 41160941 - 41161095
Alignment:
Q  85 aaaatgcagcaaacgacttgatttgggcaaggaaaaactgatggtagttggcatagggaaggaatccatgttggatgttggaggtgg---aaggtgagag 181  Q
    ||||||||||  | |||||||||||| | ||||||||||| | || ||||||| ||||||||||||||||  |||| |||| |||||   ||||||||||    
T  41160941 aaaatgcagcggaagacttgatttggtcgaggaaaaactggtcgttgttggcaaagggaaggaatccatgcaggatattggtggtggaacaaggtgagag 41161040  T
Q  182 gcagtgggggtgaagagtggtgaaggaaatggaggaaatcccaaaagatagggaa 236  Q
    ||||||||| |||||||     ||  ||||||||||||| ||||| |||||||||    
T  41161041 gcagtggggttgaagagatcctaataaaatggaggaaataccaaaggatagggaa 41161095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 362 - 445
Target Start/End: Original strand, 41171327 - 41171410
Alignment:
Q  362 ctattccaaagtcaaagacctgccacaaataaactatttaaatttaacttacaaatgtctaaataaaaccataaacttcaaagt 445  Q
    ||||| ||||||||||||||||||||||||||| | | ||||||||| ||||||||  | || ||||||||||||||| |||||    
T  41171327 ctatttcaaagtcaaagacctgccacaaataaaatttgtaaatttaatttacaaattaccaactaaaaccataaacttgaaagt 41171410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University