View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928-Insertion-22 (Length: 632)
Name: NF4928-Insertion-22
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928-Insertion-22 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 34 - 355
Target Start/End: Complemental strand, 51762672 - 51762351
Alignment:
| Q |
34 |
gaattttgtgttgttcaaaaatgtacttttgaataaaatatgttgtaacttccaccaatatttgtgaatttttagaaatgtgtagatcagaagggaaagc |
133 |
Q |
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| T |
51762672 |
gaattttgtgttgttcaaaaatgcacttttgaataaaatatgttgtaacttccaccaatatttgtgaatttttagaaatgtgtagatcagaagggaaagc |
51762573 |
T |
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| Q |
134 |
tgttcccttgattttatctcatgtatctcatctcatatttatctataatctcaacaagcatttaagaataattatttttatgaataggtcgattattgtg |
233 |
Q |
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| T |
51762572 |
tgttcccttgattttatctcatgtatctcatctcatatttatctataatctctacaagcatttaagaataattatttttatgaataggtcgattattgtg |
51762473 |
T |
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| Q |
234 |
atcaaaaggagctagtaattaaaaaactgaacaatttataagaaatcaaaatatttaacattagctaagccaacatataaaaaacagcatacaaaaacat |
333 |
Q |
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| T |
51762472 |
atcaaaaggagctagtaattaaaaaactgaacaatttataagaaatcaaaatatttaacattagctaagccaacatataaaaaacagcatacaaaaacat |
51762373 |
T |
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| Q |
334 |
tgatttgcatcttgtcttttgc |
355 |
Q |
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| T |
51762372 |
tgatttgcatcttgtcttttgc |
51762351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 417 - 632
Target Start/End: Complemental strand, 51762289 - 51762078
Alignment:
| Q |
417 |
tttttcatacacactaagttatgtcaacatagtcaacgatacaagaacaacacaaaatcagaaacttgactnnnnnnnnnnnnnnnnnnnnnncagttat |
516 |
Q |
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| T |
51762289 |
tttttcatacacactaagttatgtcaacatagtcaacgatacaagaacaacacaaaatcagaaacttgactatgcatgcatgcatgcat----cagttat |
51762194 |
T |
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| Q |
517 |
tggaattggagtgaggcttatgattcatgctttccccaagacgattgatcaagtagagagcgttacttataaacatagatgcatcggtaacttttctttt |
616 |
Q |
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| T |
51762193 |
tggaattggagtgaggcttttgattcatgctttccccaagacgattgatcaagtagagagcgttacttataaacatagatgcatcggtaacttttctttt |
51762094 |
T |
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| Q |
617 |
cacctccaacttcacc |
632 |
Q |
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| T |
51762093 |
cacctccaacttcacc |
51762078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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