View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928-Insertion-26 (Length: 609)

Name: NF4928-Insertion-26
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928-Insertion-26
NF4928-Insertion-26
[»] chr1 (1 HSPs)
chr1 (6-609)||(11759234-11759837)


Alignment Details
Target: chr1 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 6 - 609
Target Start/End: Original strand, 11759234 - 11759837
Alignment:
Q  6 cagttagtacttaggagcttccacttgtcttgtgagacacgcttttgaaggttagaaaataagaacatgaacgagagtgagaaatgtgatcaatcaaata 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11759234 cagttagtacttagtagcttccacttgtcttgtgagacacgcttttgaaggttagaaaataagaacaagaacgagagtgagaaatgtgatcaatcaaata 11759333  T
Q  106 tttataaaatgtgaaataaaatgaagtgtgtgggttaaattcacattatagtacatggaatatgtgcacttttctttttactcgtgcatgcggttagtta 205  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11759334 tttatcaaatgtgaaataaaatgaagtgtgtgggttaaattcacattttagtacatggaatatgtgcacttttctttttactcgtgcatgcggttagtta 11759433  T
Q  206 cttcaggttgtccaacgagagattttaccttttacttgcaagttgtaaatgtagggtaaatttctttttaaaaattgtaccagctttaaataaaatatct 305  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11759434 cttcaggttttccaacgagagattttaccttttacttgcaagttgtaaatgtagtgtaaatttctttttaaaaattgtaccagctttaaataaaatatct 11759533  T
Q  306 ataagattatagaaattattatagtattaacattttggcatgcctgtaaccataggctagcaaaacaacttatacaacaatgatctaaaaatttaagaat 405  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11759534 ataagattatagaaattattataatattaacattttggcatgcctgtaaccataggctagcaaaacaacttatacaacaatgatctaaaaatttaagaat 11759633  T
Q  406 ttaatttgtatatagcgatactgttaaacttttttacacgcccataaaaataaattttgaaatttaatttggttgttttattgttacattacatgattgt 505  Q
    |||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11759634 ttaatttgtatataacgatactgtaaaacttttttacacgcgcataaaaataaattttaaaatttaatttggttgttttattgttacattacatgattgt 11759733  T
Q  506 cttcttctcatccttattttaattaagagacaaaactatcataaaggaatgagcaaataatttttattgctaccatttttattttatgctatctataatc 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11759734 cttcttctcatccttattttaattaagagacaaaactatcataaaggaatgagcaaataatttttattgctaccatttttattttatgctatctataatc 11759833  T
Q  606 ctca 609  Q
    ||||    
T  11759834 ctca 11759837  T

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