View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928-Insertion-27 (Length: 179)
Name: NF4928-Insertion-27
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928-Insertion-27 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 9e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 9e-81
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 6407276 - 6407447
Alignment:
| Q |
8 |
cttggctatcacgaaaacaacgtactgtagcacgatcatcaaccgaggctgaataccgtgttgtagccactgcatctgttgaactcatgtggcttcaaaa |
107 |
Q |
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| T |
6407276 |
cttggctatcacaaaaacaacgtactgtagcacgatcatcaactgaggctgaataccgtgctgtagccactacatctgctgaactcatgtggcttcaaaa |
6407375 |
T |
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| Q |
108 |
tttgcttcaagagcttcatataccattgtcgaaaccacctctattattatgtgacaatgtaggtgctacata |
179 |
Q |
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| T |
6407376 |
tttgcttcaagagcttcatataccattgtcgaaaccacctctattattatgtgacaatgtaggtgctacata |
6407447 |
T |
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Target: chr4 (Bit Score: 141; Significance: 3e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 40094636 - 40094484
Alignment:
| Q |
26 |
aacgtactgtagcacgatcatcaaccgaggctgaataccgtgttgtagccactgcatctgttgaactcatgtggcttcaaaatttgcttcaagagcttca |
125 |
Q |
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| T |
40094636 |
aacgtactgtagcacgatcatcaaccgaggctgaataccgtgctgtagccactgcatctgctgaactcacgtggcttcaaaatttgcttcaagagcttca |
40094537 |
T |
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| Q |
126 |
tataccattgtcgaaaccacctctattattatgtgacaatgtaggtgctacat |
178 |
Q |
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| T |
40094536 |
tataccattgtcgaaaccacctctattattatgtgacaatgtaggtgctacat |
40094484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 654082 - 653990
Alignment:
| Q |
8 |
cttggctatcacgaaaacaacgtactgtagcacgatcatcaaccgaggctgaataccgtgttgtagccactgcatctgttgaactcatgtggct |
101 |
Q |
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| T |
654082 |
cttggttatcacgcaaacaacgcactgtagcacg-tcttcaactgaggctgaataccgtgcagtggccactgcaactgctgaactagtgtggct |
653990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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