View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928-Insertion-29 (Length: 805)

Name: NF4928-Insertion-29
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928-Insertion-29
NF4928-Insertion-29
[»] chr6 (2 HSPs)
chr6 (7-356)||(20643043-20643392)
chr6 (391-472)||(20643402-20643483)
[»] chr4 (4 HSPs)
chr4 (7-253)||(33246112-33246358)
chr4 (252-472)||(33246640-33246859)
chr4 (10-98)||(42469447-42469535)
chr4 (22-113)||(13775578-13775669)
[»] chr7 (4 HSPs)
chr7 (10-257)||(21767740-21767987)
chr7 (10-98)||(42679586-42679674)
chr7 (10-98)||(3934013-3934101)
chr7 (61-157)||(19788220-19788316)
[»] chr1 (2 HSPs)
chr1 (10-257)||(4820161-4820404)
chr1 (10-257)||(4831961-4832204)
[»] chr3 (1 HSPs)
chr3 (22-113)||(4532263-4532354)
[»] chr8 (2 HSPs)
chr8 (10-98)||(4878409-4878497)
chr8 (22-113)||(36378261-36378352)
[»] chr5 (2 HSPs)
chr5 (22-113)||(11850985-11851076)
chr5 (393-441)||(29373125-29373174)
[»] chr2 (1 HSPs)
chr2 (22-113)||(31488182-31488273)
[»] scaffold0050 (1 HSPs)
scaffold0050 (21-113)||(30659-30751)


Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 7 - 356
Target Start/End: Original strand, 20643043 - 20643392
Alignment:
Q  7 aacatggtcccgaggacattcatgaagtctttgaaaaagagaagcatgacaaaccaatatatgatgaagaatatattcttgctgaatatggtaaatcttg 106  Q
    ||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20643043 aacatggtcccgatgacattcatgaagtctttgacaaagaggagcatgacaaaccaatatatgatgaagaatatattcttgttgaatatggtaaatcttg 20643142  T
Q  107 ggaggttnnnnnnngctcgcaaacaacagcagccaaagaagaaccatggctaggatatgatatctttcaaactctttgcacctctcaagacatggcttgt 206  Q
    |||||||       ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20643143 ggaggttaaaaaaagcttgcaaacaacagcagccaaagaagaaccatggctaggatatgatatctttcaaactcattgcacctctcaagacatggcttgt 20643242  T
Q  207 aacgacatcatcgataacacaagatatgaaaacattgcatcaaactatataataattcctattatcgcatagaatgttgaattatttgacattatgaaag 306  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  20643243 aacgacatcatcgatagcacaagatgtgaaaacattgcatcaaactatataataattcctattatcgcatagaatgttgaattatttgccattatgacag 20643342  T
Q  307 caggtttgctttgcatttaatgcttgatgataagtgagacttaaaagcta 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20643343 caggtttgctttgcatttaatgcttgatgataagtgagacttaaaagcta 20643392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 391 - 472
Target Start/End: Original strand, 20643402 - 20643483
Alignment:
Q  391 gcaaaggaatgcaaatgcagactaacataaagtaaaaacacttttcaactttcaaacgtatttctataaacaatctctataa 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  20643402 gcaaaggaatgcaaatgcagactaacataaagtaaaaacacttttcaactttcaaacatatctctataaacaatctccataa 20643483  T

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Target: chr4 (Bit Score: 174; Significance: 3e-93; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 7 - 253
Target Start/End: Original strand, 33246112 - 33246358
Alignment:
Q  7 aacatggtcccgaggacattcatgaagtctttgaaaaagagaagcatgacaaaccaatatatgatgaagaatatattcttgctgaatatggtaaatcttg 106  Q
    ||||| ||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  33246112 aacatagtcccgatgacattcatgaagtctttgaaaaagaggagcatgacaacccaatatatgacgaagaatatattcttgctgaatatggtaaatcttg 33246211  T
Q  107 ggaggttnnnnnnngctcgcaaacaacagcagccaaagaagaaccatggctaggatatgatatctttcaaactctttgcacctctcaagacatggcttgt 206  Q
     ||||||       ||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  33246212 agaggttaaaaaaagcttgcaaacaacagcaaccaaagaagaaccatggctaggatatgatatttttcaaactcattgcacctctcaagacatggcttgt 33246311  T
Q  207 aacgacatcatcgataacacaagatatgaaaacattgcatcaaacta 253  Q
    |||||||||||||||| ||||| || |||||||||||||||||||||    
T  33246312 aacgacatcatcgatagcacaatatgtgaaaacattgcatcaaacta 33246358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 252 - 472
Target Start/End: Original strand, 33246640 - 33246859
Alignment:
Q  252 tatataataattcctattatcgcatagaatgttgaattatttgacattatgaaagcaggtttgctttgcatttaatgcttgatgataagtgagacttaaa 351  Q
    |||||||||||||||||||||  | |||||||||||||||||| |||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  33246640 tatataataattcctattatccgagagaatgttgaattatttgtcattgtgtcagcaggtttgctttgcatttaatgcttgatgataagtgagacttaaa 33246739  T
Q  352 agctaannnnnnnctcagtaaattaaacactatacaactgcaaaggaatgcaaatgcagactaacataaagtaaaaacacttttcaactttcaaacgtat 451  Q
    |||| |        |||||||||||| ||||||||||| | ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  33246740 agct-atttgtttttcagtaaattaagcactatacaaccggaaatgaatgcaaatgcagactaacataaagtaaagacacttttcaactttcaaacatat 33246838  T
Q  452 ttctataaacaatctctataa 472  Q
     ||||||||||||||| ||||    
T  33246839 ctctataaacaatctccataa 33246859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 42469535 - 42469447
Alignment:
Q  10 atggtcccgaggacattcatgaagtctttgaaaaagagaagcatgacaaaccaatatatgatgaagaatatattcttgctgaatatggt 98  Q
    |||||||||| |||||||||||||  || ||||||||| |||||||| ||||||||||||| ||||||||| |||||||||||||||||    
T  42469535 atggtcccgatgacattcatgaagcattggaaaaagaggagcatgacgaaccaatatatgacgaagaatatgttcttgctgaatatggt 42469447  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 13775578 - 13775669
Alignment:
Q  22 acattcatgaagtctttgaaaaagagaagcatgacaaaccaatatatgatgaagaatatattcttgctgaatatggtaaatcttgggaggtt 113  Q
    |||||||||||| ||||||||||||| |||||||  ||||||||||||| ||| ||||||||| ||||||||||||| |||||| |||||||    
T  13775578 acattcatgaagcctttgaaaaagaggagcatgatgaaccaatatatgacgaaaaatatattcatgctgaatatggtgaatctttggaggtt 13775669  T

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Target: chr7 (Bit Score: 63; Significance: 6e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 21767987 - 21767740
Alignment:
Q  10 atggtcccgaggacattcatgaagtctttgaaaaagagaagcatgacaaaccaatatatgatgaagaatatattcttgctgaatatggtaaatcttggga 109  Q
    ||||||| || |||||||||||||| |||||||||||| || ||||| ||||||||||||| ||||||||| ||| ||||||||||||  |||||| |||    
T  21767987 atggtcctgatgacattcatgaagtgtttgaaaaagaggagaatgacgaaccaatatatgacgaagaatatcttcctgctgaatatggagaatctttgga 21767888  T
Q  110 ggttnnnnnnngctcgcaaacaacagcagccaaagaagaaccatggctaggatatgatatctttcaaactctttgcacctctcaagacatggcttgtaac 209  Q
    ||||        || |||||||| | || ||||| |  ||  |||||||||| |  || |||| ||  ||| ||||||||| |||||||||| ||||||     
T  21767887 ggttaaaagaatcttgcaaacaaaaacaaccaaaaataaattatggctaggacacaatttcttccacgctcattgcacctcacaagacatggtttgtaat 21767788  T
Q  210 gacatcatcgataacacaagatatgaaaacattgcatcaaactatata 257  Q
    | |||  || |||||| ||||| ||||||  |||||||||||||||||    
T  21767787 gtcattgtcaataacaaaagatgtgaaaatgttgcatcaaactatata 21767740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 42679674 - 42679586
Alignment:
Q  10 atggtcccgaggacattcatgaagtctttgaaaaagagaagcatgacaaaccaatatatgatgaagaatatattcttgctgaatatggt 98  Q
    |||||||||| |||||||||||||  || ||||||||| |||||||| ||||||||||||| ||||||||| |||||||||||||||||    
T  42679674 atggtcccgatgacattcatgaagcattggaaaaagaggagcatgacgaaccaatatatgacgaagaatatgttcttgctgaatatggt 42679586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 3934013 - 3934101
Alignment:
Q  10 atggtcccgaggacattcatgaagtctttgaaaaagagaagcatgacaaaccaatatatgatgaagaatatattcttgctgaatatggt 98  Q
    |||||| ||| ||||||||||||| ||||||||| ||| ||||| |  ||||||||||||||||||||||| |||||||||||||||||    
T  3934013 atggtctcgatgacattcatgaagcctttgaaaaggaggagcataatgaaccaatatatgatgaagaatatgttcttgctgaatatggt 3934101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 157
Target Start/End: Original strand, 19788220 - 19788316
Alignment:
Q  61 caatatatgatgaagaatatattcttgctgaatatggtaaatcttgggaggttnnnnnnngctcgcaaacaacagcagccaaagaagaaccatggct 157  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| |||||||       ||| |||||||||| || ||||||||| || ||||||    
T  19788220 caatatatgatgaagaatatgttcttgctgaatatggtgaatctttggaggttaaaagaagcttgcaaacaacaacatccaaagaaggactatggct 19788316  T

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Target: chr1 (Bit Score: 61; Significance: 9e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 10 - 257
Target Start/End: Original strand, 4820161 - 4820404
Alignment:
Q  10 atggtcccgaggacattcatgaagtctttgaaaaagagaagcatgacaaaccaatatatgatgaagaatatattcttgctgaatatggtaaatcttggga 109  Q
    |||||||||| |||||||||||||| |||||||||||| || |||||||||||||||| || ||| ||||| ||| ||||||||||||  |||||| |||    
T  4820161 atggtcccgatgacattcatgaagtgtttgaaaaagaggagaatgacaaaccaatatacgacgaataatatcttcctgctgaatatggcgaatctttgga 4820260  T
Q  110 ggttnnnnnnngctcgcaaacaacagcagccaaagaagaaccatggctaggatatgatatctttcaaactctttgcacctctcaagacatggcttgtaac 209  Q
    ||||       | | | |||||||| || |||||||||||| ||||||| || |  ||||| |||| |||| |||||| ||  ||||||||| ||||||     
T  4820261 ggttaaagaagg-ttgtaaacaacaacaaccaaagaagaactatggctaagacacaatatccttcacactcgttgcacttcgtaagacatggtttgtaat 4820359  T
Q  210 gacatcatcgataacacaagatatgaaaacattgcatcaaactatata 257  Q
    |   | ||| |||| | ||||| ||||||||||| |||||||| ||||    
T  4820360 g---ttatcaataatataagatgtgaaaacattgtatcaaactgtata 4820404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 10 - 257
Target Start/End: Original strand, 4831961 - 4832204
Alignment:
Q  10 atggtcccgaggacattcatgaagtctttgaaaaagagaagcatgacaaaccaatatatgatgaagaatatattcttgctgaatatggtaaatcttggga 109  Q
    |||||||||| |||||||||||||| |||||||||||| || |||||||||||||||| || ||| ||||| ||| ||||||||||||  |||||| |||    
T  4831961 atggtcccgatgacattcatgaagtgtttgaaaaagaggagaatgacaaaccaatatacgacgaataatatcttcctgctgaatatggcgaatctttgga 4832060  T
Q  110 ggttnnnnnnngctcgcaaacaacagcagccaaagaagaaccatggctaggatatgatatctttcaaactctttgcacctctcaagacatggcttgtaac 209  Q
    ||||       | | | |||||||| || |||||||||||| ||||||| || |  ||||| |||| |||| |||||| ||  ||||||||| ||||||     
T  4832061 ggttaaagaagg-ttgtaaacaacaacaaccaaagaagaactatggctaagacacaatatccttcacactcgttgcacttcgtaagacatggtttgtaat 4832159  T
Q  210 gacatcatcgataacacaagatatgaaaacattgcatcaaactatata 257  Q
    |   | ||| |||| | ||||| ||||||||||| |||||||| ||||    
T  4832160 g---ttatcaataatataagatgtgaaaacattgtatcaaactgtata 4832204  T

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Target: chr3 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 4532263 - 4532354
Alignment:
Q  22 acattcatgaagtctttgaaaaagagaagcatgacaaaccaatatatgatgaagaatatattcttgctgaatatggtaaatcttgggaggtt 113  Q
    |||||||||||| ||||||||||||| |||||||  ||||||||||||| ||| ||||||||| ||||||||||||| |||||| |||||||    
T  4532263 acattcatgaagcctttgaaaaagaggagcatgatgaaccaatatatgacgaaaaatatattcatgctgaatatggtgaatctttggaggtt 4532354  T

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Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 4878409 - 4878497
Alignment:
Q  10 atggtcccgaggacattcatgaagtctttgaaaaagagaagcatgacaaaccaatatatgatgaagaatatattcttgctgaatatggt 98  Q
    |||||| ||| ||||||||||||| ||||||||| ||| ||||| |  ||||||||||||||||||||||| |||||||||||||||||    
T  4878409 atggtctcgatgacattcatgaagcctttgaaaaggaggagcataatgaaccaatatatgatgaagaatatgttcttgctgaatatggt 4878497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 36378352 - 36378261
Alignment:
Q  22 acattcatgaagtctttgaaaaagagaagcatgacaaaccaatatatgatgaagaatatattcttgctgaatatggtaaatcttgggaggtt 113  Q
    |||||||||||| ||||||||||||| |||||||  |||||||||||||  || ||||||||| ||||||||||||| |||||| |||||||    
T  36378352 acattcatgaagcctttgaaaaagaggagcatgatgaaccaatatatgacaaaaaatatattcctgctgaatatggtgaatctttggaggtt 36378261  T

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Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 11851076 - 11850985
Alignment:
Q  22 acattcatgaagtctttgaaaaagagaagcatgacaaaccaatatatgatgaagaatatattcttgctgaatatggtaaatcttgggaggtt 113  Q
    |||||||||||| ||||||||||||| |||||||  |||||||||||||  || ||||||||| ||||||||||||| |||||| |||||||    
T  11851076 acattcatgaagcctttgaaaaagaggagcatgatgaaccaatatatgacaaaaaatatattcctgctgaatatggtgaatctttggaggtt 11850985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 29373174 - 29373125
Alignment:
Q  393 aaaggaatgcaaatgcagactaacataaagta-aaaacacttttcaactt 441  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  29373174 aaaggaatgcaaatgcagcctaacataaagtaaaaaacacttttcaactt 29373125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 31488182 - 31488273
Alignment:
Q  22 acattcatgaagtctttgaaaaagagaagcatgacaaaccaatatatgatgaagaatatattcttgctgaatatggtaaatcttgggaggtt 113  Q
    |||||||||||| ||||||||||||| |||||||  |||||||||||||  || ||||||||| ||||||||||||| |||||| |||||||    
T  31488182 acattcatgaagcctttgaaaaagaggagcatgatgaaccaatatatgacaaaaaatatattcctgctgaatatggtgaatctttggaggtt 31488273  T

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Target: scaffold0050 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 30659 - 30751
Alignment:
Q  21 gacattcatgaagtctttgaaaaagagaagcatgacaaaccaatatatgatgaagaatatattcttgctgaatatggtaaatcttgggaggtt 113  Q
    ||||||||||||||  ||||||||||  |  ||||  ||||||| ||||| ||||||||| ||| || |||||||||| |||||| |||||||    
T  30659 gacattcatgaagttattgaaaaagatgataatgaagaaccaatgtatgacgaagaatatcttcatgttgaatatggtgaatctttggaggtt 30751  T

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