View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928-Insertion-3 (Length: 631)
Name: NF4928-Insertion-3
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928-Insertion-3 |
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| [»] chr6 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 7 - 631
Target Start/End: Complemental strand, 6199349 - 6198696
Alignment:
| Q |
7 |
agaaaggagagaaatcttagattagagaaagagaagggaaaattcaaaagtgattattggattgtaaaatgtttattcaactagagtgattatgtaacat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6199349 |
agaaaggagagaaatcttagattagagaaagagaagggaaaattcaaaagtgattattggattgtaaaatgtttattcaactagagtgattatgtaacat |
6199250 |
T |
|
| Q |
107 |
-gtgtcttttattaacacaaatgcaaaacatcacaaacttttctgatgaaatacaactaactaactatggttacttgattaacaagtaaatctatgatca |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6199249 |
tgtgtcttttattaacacaaatgcaaaacatcacaaacttttctgatgaaatgcaactaagtaactatggttacttgattaacaagtaaatctatgatca |
6199150 |
T |
|
| Q |
206 |
agttagtttgtaactaactccatcttatccactaactacctactaatctatattatatacatcataacaaatgaataatagactaatg-accaacacatc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6199149 |
agttagtttgtaactaactccatcttatccactaactacctactaatctatattatatacatcataacaaatgaataatagactaatgaaccaacacatc |
6199050 |
T |
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| Q |
305 |
ttctctaacgatcctttaggggtgatcctctgaacccctataatgatccacaatacccctaatcatctaaaca----------gacaactattataaatt |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6199049 |
ttctctaacgatcctttaggggtgatcctctgaacccctatgatgatccacaatacccctaatcatctaaacacaatcttttggacaactattataaatt |
6198950 |
T |
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| Q |
395 |
atttcaattccaaagattttgttaagtatagtgttgttgaacacaaacatttagattaactagcttttggatactatatctgatttcgataattatgtat |
494 |
Q |
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| T |
6198949 |
atttcaattccaaagattttgttaagtatagtgttgttgaacacaaacatttagattaactagcttttggatactatatctgatttcgataattatgtat |
6198850 |
T |
|
| Q |
495 |
atcattgtaaacattcggttcctctagtatctta-----------------ttggccttcaccgtcctggtcactggtgccattgactttttcaataccc |
577 |
Q |
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| T |
6198849 |
atcattgtaaacattcggttcctctagtaacttattaatggtagtgctttgttggccttcatcgtcctggtcactggtgccgttgactttttcaataccc |
6198750 |
T |
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| Q |
578 |
aaatgttaataattttgaagagctatggtgacaacaccatggacatttcaactg |
631 |
Q |
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| T |
6198749 |
aaatgttaattattttgaagagatgtggtgacaacactatggacatttcaactg |
6198696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 12243708 - 12243641
Alignment:
| Q |
167 |
taactatggttacttgattaacaagtaaat-ctatgatcaagttagtttgtaactaactccatcttatc |
234 |
Q |
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|||| |||||||||||| |||||||||||| ||||||||||||||| || |||||||| || ||||||| |
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| T |
12243708 |
taaccatggttacttgactaacaagtaaatcctatgatcaagttag-ttataactaacaccgtcttatc |
12243641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 23397999 - 23398125
Alignment:
| Q |
105 |
atgtgtcttttattaacacaaatgcaaaacatcacaaacttttctgatgaaatacaac----taactaactatggttacttgattaacaagtaaa-tcta |
199 |
Q |
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|||||||| |||| ||||||||||||||||| ||||||||||| | || || ||| ||||||| ||||||||||||| ||||||||||| |||| |
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| T |
23397999 |
atgtgtctcttatatacacaaatgcaaaacataccaaacttttctaacaaactataactaattaactaattatggttacttgactaacaagtaaactcta |
23398098 |
T |
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| Q |
200 |
tgatcaagttagtttgtaactaactcc |
226 |
Q |
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| T |
23398099 |
tgatcaagtaagtctctaactaactcc |
23398125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 23398152 - 23398255
Alignment:
| Q |
171 |
tatggttacttgattaacaagtaaatc-tatgatcaagttagtttgtaactaactccatcttatcca-ctaactacctactaatctatattatatacatc |
268 |
Q |
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||||||| ||||| ||||||||||| | ||||||| ||| ||| | ||||||| ||||||||| ||| |||||||| |||||| |||| |||||||||| |
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| T |
23398152 |
tatggtttcttgactaacaagtaaaccctatgatctagtaagtctctaactaattccatcttaaccaactaactactcactaatttatagtatatacatc |
23398251 |
T |
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| Q |
269 |
ataa |
272 |
Q |
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|||| |
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| T |
23398252 |
ataa |
23398255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 529 - 631
Target Start/End: Complemental strand, 22450791 - 22450687
Alignment:
| Q |
529 |
ttggccttcaccgtcctggtcactggtgccat--tgactttttcaatacccaaatgttaataattttgaagagctatggtgacaacaccatggacatttc |
626 |
Q |
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||||||||||| ||||| || || ||||||| || ||||||||| |||||||||||||| ||||||||||| | |||||||||||||||| | |||| |
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| T |
22450791 |
ttggccttcactgtccttgttaccggtgccacactggctttttcaacacccaaatgttaatcattttgaagagttgtggtgacaacaccatgtccgtttc |
22450692 |
T |
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| Q |
627 |
aactg |
631 |
Q |
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||||| |
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| T |
22450691 |
aactg |
22450687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 165 - 275
Target Start/End: Original strand, 28428311 - 28428423
Alignment:
| Q |
165 |
actaactatggttacttgattaacaagtaaatc-tatgatcaagttagtttgtaactaactccatcttat-ccactaactacctactaatctatattata |
262 |
Q |
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|||||||| |||||| ||| ||||||||||| | ||||||||||||||| | |||| |||| |||||||| | ||||||||| |||||| | || |||| |
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| T |
28428311 |
actaactagggttacatgactaacaagtaaaccctatgatcaagttagtctctaacgaacttcatcttatacaactaactactaactaatttgtagtata |
28428410 |
T |
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| Q |
263 |
tacatcataacaa |
275 |
Q |
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||||||||||||| |
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| T |
28428411 |
tacatcataacaa |
28428423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 272
Target Start/End: Complemental strand, 40154682 - 40154572
Alignment:
| Q |
164 |
aactaactatggttacttgattaacaagtaaatc-tatgatcaagttagtttgtaactaactccatcttatcc-actaactacctactaatctatattat |
261 |
Q |
| |
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|||||| ||||||||||| | ||||||||||||| ||| ||||||||| | | ||||||||||||| |||||| ||||||||| | | || |||| ||| |
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| T |
40154682 |
aactaattatggttacttaactaacaagtaaatcatataatcaagttaatctctaactaactccatattatccaactaactactaattgatatatagtat |
40154583 |
T |
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| Q |
262 |
atacatcataa |
272 |
Q |
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||||||||||| |
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| T |
40154582 |
atacatcataa |
40154572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 34015970 - 34015922
Alignment:
| Q |
163 |
taactaactatggttacttgattaacaagtaaa-tctatgatcaagtta |
210 |
Q |
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||||||||||||||||||||| | ||||||||| ||||||||||||||| |
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| T |
34015970 |
taactaactatggttacttgactgacaagtaaactctatgatcaagtta |
34015922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 38163179 - 38163116
Alignment:
| Q |
162 |
ctaactaactatggttacttgattaacaagtaaa-tctatgatcaagttagtttgtaactaact |
224 |
Q |
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|||||||||||||||||||||| || |||||||| |||||||||||||| ||| ||| ||||| |
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| T |
38163179 |
ctaactaactatggttacttgactaccaagtaaaccctatgatcaagttaatttctaattaact |
38163116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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