View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928-Insertion-30 (Length: 537)
Name: NF4928-Insertion-30
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928-Insertion-30 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 537
Target Start/End: Complemental strand, 4775574 - 4775048
Alignment:
| Q |
8 |
gatacctccttcttgagggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcatatc |
107 |
Q |
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| T |
4775574 |
gatacctccttcttgagggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcatatc |
4775475 |
T |
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| Q |
108 |
ccatagtaaatagccaattagtatagttgactgttccatgattttagcataattcatcattgtattatatgtatatatggccacacaaatgttaacatt- |
206 |
Q |
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| T |
4775474 |
ccatagta---------------tagttgactgttccatgattttagcataattcatcattgtattatatgtatatatggccacacaaatgttaacatta |
4775390 |
T |
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| Q |
207 |
--ttctattgacttgaatataacagaacgtat---------acattgcaggtggctacagaggatagatggatttggcatttacccacatctcatagtta |
295 |
Q |
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| T |
4775389 |
ttttctattgacttgaatataacagaacgtatttatcctatacatcgcaggtggctacagaggatagatggatttggcatttacccacatctcatagtta |
4775290 |
T |
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| Q |
296 |
catagttaacaatgcttgtaataaagtaacaaaggtgtttcagaactctactcctcatgttctttggcttaaagtagtacttctcaaagtctcaattttt |
395 |
Q |
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| T |
4775289 |
catagttaacaatgcttgtaataaagtaacaaaggtgtttcagaactctactcctcatgttctttggcttaaagtagtacttctcaaagtctcaattttt |
4775190 |
T |
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| Q |
396 |
gcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaaggagggtcttggtgctgtttgtttttctgtttttgtagtgaacttgac |
495 |
Q |
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| T |
4775189 |
gctttacgtttgagtttgaatcatgttcctgctagagacaatttatttaaaaggagggtcttagtgctgtttgtttttctgtttttgtagtgaacttgac |
4775090 |
T |
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| Q |
496 |
cagttgcatgtttctgtaatcttgatgggttggtttcgtaca |
537 |
Q |
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| T |
4775089 |
cagttgcatgtttctctaatcttgatgggttggtttcgtaca |
4775048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 255 - 457
Target Start/End: Complemental strand, 29553195 - 29552984
Alignment:
| Q |
255 |
gaggatagatggatttggcatttacccacatctcatagttacatagttaacaatgcttgtaataaagtaacaaaggtgtttcagaactctactcctcat- |
353 |
Q |
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| T |
29553195 |
gaggatagatggatttggcatttacactcttctcagagttacacagttagcaatgcgtataataaattgatggagggtttgcagaactccactcctcaga |
29553096 |
T |
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| Q |
354 |
--------gttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataa |
445 |
Q |
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| T |
29553095 |
attctcaggttctttggcttaaaatggttcctctcaaagtctctatttttgcttggcgattgggtctgaatcgtattcctactaaaaacaatttatttaa |
29552996 |
T |
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| Q |
446 |
aaggagggtctt |
457 |
Q |
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| T |
29552995 |
aaggagggtctt |
29552984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 31 - 199
Target Start/End: Complemental strand, 448677 - 448506
Alignment:
| Q |
31 |
tgtaggagtattaacttaa---gcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcatatcccatagtaaatagccaatta |
127 |
Q |
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| T |
448677 |
tgtaggagtattaacttaattagcattgaccaaatcaaataatgatgggtgtaataatatcagtaaatggaaatcatatcttatagtaactagccaatta |
448578 |
T |
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| Q |
128 |
gtatagttgactgttccatgattttagcataattcatcattgtattatatgtatatatggccacacaaatgt |
199 |
Q |
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| T |
448577 |
gtatagttgactgttccatgatttgagcaatattcatcattgtattccatgtatatatggctacacaaatgt |
448506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 454
Target Start/End: Original strand, 38397707 - 38397807
Alignment:
| Q |
354 |
gttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaaggaggg |
453 |
Q |
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| T |
38397707 |
gttctttggcttaaagtggtttctctcaaagtatcaattttcgcttggcgtttgggtttgaatcgtattcctacaaaagacaatttatttaaaaggaggg |
38397806 |
T |
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| Q |
454 |
t |
454 |
Q |
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| T |
38397807 |
t |
38397807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 43060932 - 43060836
Alignment:
| Q |
8 |
gatacctccttcttgagggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcat |
104 |
Q |
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| T |
43060932 |
gatacctccatcttgagcgggcgtgtaggagtattaacttaagcatttaccaaatcaaataacaatggttgtaatgatatcagtaaatggaaatcat |
43060836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 354 - 454
Target Start/End: Original strand, 17173614 - 17173714
Alignment:
| Q |
354 |
gttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaaggaggg |
453 |
Q |
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| T |
17173614 |
gttctttggcttaaagtggttcatctcaaagtatcaatatttgcttggcgtttgggtttgaatcgtattcctacaaaagacaatttatttaaaaggaggg |
17173713 |
T |
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| Q |
454 |
t |
454 |
Q |
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| T |
17173714 |
t |
17173714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 43060807 - 43060749
Alignment:
| Q |
173 |
tatatgtatatatggccacacaaatgttaacattttctattgacttgaatataacagaa |
231 |
Q |
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| T |
43060807 |
tatatatatatattaccacacaaatgttaatattttctattgacttgaatacaacagaa |
43060749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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