View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928-Insertion-31 (Length: 460)
Name: NF4928-Insertion-31
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928-Insertion-31 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 15 - 460
Target Start/End: Original strand, 39527204 - 39527668
Alignment:
| Q |
15 |
ctaagcaaactaattccacaagcaaacagagcatagtgtacaatagaaaacacaaagagaggtagggactggggagctaactttttcaatcattcagtgc |
114 |
Q |
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| T |
39527204 |
ctaagcaaactaattccacaagcaaacagagcatagtgtacaatagaaaacaca--gagaggtagggactggggagctaactttttcaatcattcagtgc |
39527301 |
T |
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| Q |
115 |
ttctctgataaatacttatcataacagtaagacaaatatcaatcttaaagaatgcataataattaatctcaaataataacagttaagtgtaa-------- |
206 |
Q |
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| T |
39527302 |
ttctctgataaatacttatcataacagtaagacaaacatcaatcttaaagaatgcataataattaatctcaaataataacagttaagtgtaaaacaattt |
39527401 |
T |
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| Q |
207 |
-------------taacagcaaaacaggcttccactagctggggaagacctagataaatttctgtcatggatcaagtgttaagataggtttgtttatctc |
293 |
Q |
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| T |
39527402 |
tacacaacagaaataacagcaaaacaggcttccactagctggggaagacctagataaatttctgtcatggatcaagtgttaagataggtttgtttatctc |
39527501 |
T |
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| Q |
294 |
taaatctctcgttagtttggcctataatttttcttaacttgcccatatgttggactatactccatttagtcagccagtgcttttaattcttctccacacg |
393 |
Q |
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| T |
39527502 |
taaatctctcgttagtttggcctataatttttcttaacttgcccttatgttggactatactccatttagtcagccagtgcttttaattcttctccacacg |
39527601 |
T |
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| Q |
394 |
tgctatcttccaagaaatgtatttttgttcctatcttatcttgtgtaaaccacttatcgttgtaaca |
460 |
Q |
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| T |
39527602 |
tgctatcttccaagaaatgtatttttgttcctatcttatcttgtgtaaaccacttatcgttgtaaca |
39527668 |
T |
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