View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928-Insertion-32 (Length: 463)

Name: NF4928-Insertion-32
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928-Insertion-32
NF4928-Insertion-32
[»] chr5 (1 HSPs)
chr5 (8-463)||(40740917-40741372)


Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 8 - 463
Target Start/End: Original strand, 40740917 - 40741372
Alignment:
Q  8 gtttcatatggaaccaaacaggtctctgtgatgcccttttgtcttctctatacaattttcctcgcaacccatctttggttcttgctttagtacaatattg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40740917 gtttcatatggaaccaaacaggtctctgtgatgcccttttgtcttctctatacaattttcctcgcaacccatctttggttcttgctttagtacaatattg 40741016  T
Q  108 gtctccaaaaaccaacacttttgtttttccttggggtgaagcaaccatcacacttgaagatgttatgattctcggtggattttcagtccttggtgaaccc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  40741017 gtctccaaaaaccaacacttttgtttttccttggggtgaagcaaccatcacatttgaagatgttatgattctcggtggattttcagtccttggtgaaccg 40741116  T
Q  208 gtaacactttcgctttcttctgatttgctttcaatcgaagctaaattgatcgagattcgaaggagtatgtcgaaaaacaagtccaaaaaggcagatcata 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40741117 gtaacactttcgctttcttctgatttgctttcaatcgaagctaaattgatcgagattcgaaggagtatgtcgaaaaacaagtccaaaaaggcagatcata 40741216  T
Q  308 atgcttggttaaagtttttcaaagaggggttagaagcagaaagtgacaaactttatgaaattgagcatgtgggttttctttgtttatggttatcaaggtt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40741217 atgcttggttaaagtttttcaaagaggggttagaagcagaaagtgacaaactttttgaaattgagcatgtgggttttctttgtttatggttatcaaggtt 40741316  T
Q  408 cgtttttccttcattttccgattctgttatcgacccgcgtgtttttccaattgcta 463  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40741317 tgtttttccttcattttctgattctgttatcgacccgcgtgtttttccaattgcta 40741372  T

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