View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928-Insertion-33 (Length: 146)
Name: NF4928-Insertion-33
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928-Insertion-33 |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 3e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 3e-68
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 17056408 - 17056542
Alignment:
| Q |
12 |
ctaccataaactactagaggctaatgagcaatatttgctactatttaatttatattaatattttccgacaataagtccttataaaactgattggaaatca |
111 |
Q |
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| T |
17056408 |
ctaccataaactactagaggctaattagcaatatttgctactatttaatttatattaatattttccgacaataagtccttataaaactgattggaaatca |
17056507 |
T |
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| Q |
112 |
ttggaacatcttcctcttcgatcaagcatccttca |
146 |
Q |
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| T |
17056508 |
ttggaacatcttcctcttcgatcaagcatccttca |
17056542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 38 - 146
Target Start/End: Original strand, 22597027 - 22597135
Alignment:
| Q |
38 |
agcaatatttgctactatttaatttatattaatattttccgacaataagtccttataaaactgattggaaatcattggaacatcttcctcttcgatcaag |
137 |
Q |
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| T |
22597027 |
agcaatatttgctactatttattttatgttagtattatccaataataactcttcatgaaacttattgggaatcatttgaacctcttcctcttctaacaag |
22597126 |
T |
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| Q |
138 |
catccttca |
146 |
Q |
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| T |
22597127 |
catccttca |
22597135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 9e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 47335590 - 47335695
Alignment:
| Q |
41 |
aatatttgctactatttaatttatattaatattttccgacaataagtccttataaaactgattggaaatcattggaacatcttcctcttcgatcaagcat |
140 |
Q |
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| T |
47335590 |
aatatttgctgctatttaaattatattaatattttccaacaataagttattataaaacttattggaaagcattgaaatatcttcctctttgttcaaacat |
47335689 |
T |
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| Q |
141 |
ccttca |
146 |
Q |
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| T |
47335690 |
ccttca |
47335695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 47337923 - 47337811
Alignment:
| Q |
38 |
agcaatatttgctactatttaatttatattaatattttccgacaataagtccttataaaactgattggaaatc----attggaacatcttcctcttcgat |
133 |
Q |
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| T |
47337923 |
agcaatatttgctactatttaatttatatttatattttccaacaataagtccttatagaacttgttggaaagcatcgatcgaaacatcttcctttttgat |
47337824 |
T |
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| Q |
134 |
caagcatccttca |
146 |
Q |
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| T |
47337823 |
caaacatccttca |
47337811 |
T |
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