View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928-Insertion-36 (Length: 509)

Name: NF4928-Insertion-36
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928-Insertion-36
NF4928-Insertion-36
[»] chr5 (2 HSPs)
chr5 (181-437)||(27439530-27439786)
chr5 (13-123)||(27439802-27439913)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 181 - 437
Target Start/End: Complemental strand, 27439786 - 27439530
Alignment:
Q  181 tgtacaagcactcccgcacgtggccctaaaactcagttcgtctctcacttgaaacctcactcactcccgccgcgcaagccgtcacagcacgctatgtcag 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27439786 tgtacaagcactcccgcacgtggccctaaaactcagttcgtctctcacttgaaacctcactcactcccgccgcgcaagccgtcacagcacgctatgtcag 27439687  T
Q  281 aatccatactttcatccataaaacctcccaaaaccttccacaccaaaattccactcatcaccaaccccatttccacaaccacaatcgcttttcaaacaaa 380  Q
    | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||    
T  27439686 attccatactttcatccataaaccctcccaaaaccttccacaccaaaattccactcatcaccaaccccatttccacaaccacaatcgctttcaaaccaaa 27439587  T
Q  381 caaattcaaaatcccaaccatgattcgcgctgcaacgacgcctaaacagggtgaaat 437  Q
    ||||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||    
T  27439586 caaattcaaaatcccaaccatgatttgcgcttcaacgacgccaaaacaaggtgaaat 27439530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 27439913 - 27439802
Alignment:
Q  13 gattttgacaacctttaatctagttcaattgatctt-caaacccgacaatataactaatgataaacaagtacttttctttagagggataaataagtagtt 111  Q
    |||| ||||||||||||||||||| ||||||||||| |||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  27439913 gattgtgacaacctttaatctagtccaattgatctttcaaacgagacaatataactaatgataaacaagtacttttcattagagggataaataagtactt 27439814  T
Q  112 attcaatatgtc 123  Q
    ||||||||||||    
T  27439813 attcaatatgtc 27439802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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