View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928-Insertion-4 (Length: 386)

Name: NF4928-Insertion-4
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928-Insertion-4
NF4928-Insertion-4
[»] chr6 (5 HSPs)
chr6 (8-179)||(31528627-31528798)
chr6 (241-386)||(31528847-31528992)
chr6 (305-386)||(2161816-2161896)
chr6 (351-379)||(5377058-5377086)
chr6 (351-379)||(5378913-5378941)
[»] chr2 (4 HSPs)
chr2 (323-386)||(31155548-31155610)
chr2 (241-288)||(31155636-31155683)
chr2 (302-375)||(20515968-20516040)
chr2 (351-379)||(29758300-29758328)
[»] scaffold0286 (1 HSPs)
scaffold0286 (305-386)||(15210-15290)
[»] chr8 (5 HSPs)
chr8 (20-102)||(5292625-5292707)
chr8 (264-343)||(1914085-1914165)
chr8 (351-379)||(5567606-5567634)
chr8 (351-379)||(30224410-30224438)
chr8 (351-379)||(36535874-36535902)
[»] chr7 (4 HSPs)
chr7 (351-383)||(28014292-28014324)
chr7 (351-383)||(25471790-25471822)
chr7 (351-383)||(28124606-28124638)
chr7 (351-383)||(28126433-28126465)
[»] chr1 (3 HSPs)
chr1 (340-383)||(23689489-23689532)
chr1 (351-383)||(16808597-16808629)
chr1 (253-297)||(23689402-23689445)
[»] chr4 (4 HSPs)
chr4 (351-379)||(7040541-7040569)
chr4 (351-379)||(18656288-18656316)
chr4 (351-379)||(23566392-23566420)
chr4 (351-383)||(52518940-52518972)
[»] chr3 (2 HSPs)
chr3 (351-379)||(1140181-1140209)
chr3 (351-379)||(17402805-17402833)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 31528627 - 31528798
Alignment:
Q  8 tagtaggcgcagacaaaaagtatattgatagtgtctattgcactccatagagaacaaaaagaagtgaaatcaaaatccttcatacatatccatgagaaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31528627 tagtaggcgcagacaaaaagtatattgatagtgtctattgcactccatagagaacaaaaagaagtgaaatcaaaatccttcatacatatccatgagaaat 31528726  T
Q  108 caccttcatatccttcaaagggaaacaaacaataaccaacgtttagtgttaaaattgttggaagttatgtgg 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31528727 caccttcatatccttcaaagggaaacaaacaataaccaacgtttagtgttaaaattgttggaagttatgtgg 31528798  T

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Target: chr6; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 241 - 386
Target Start/End: Original strand, 31528847 - 31528992
Alignment:
Q  241 ctccaagttactctataaataagctacctcattgtaccattcaatcattcttttatcggtctattcattcaactatgaattcctatgagtattcttctta 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31528847 ctccaagttactctataaataagctacctcattgtaccattcaatcattcttttatcggtctattcattcaactatgaattcctatgagtattcttctta 31528946  T
Q  341 tgaatacaactatgcttgctatcttgcttacatctatgatcttcat 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31528947 tgaatacaactatgcttgctatcttgcttacatctatgatcttcat 31528992  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 386
Target Start/End: Complemental strand, 2161896 - 2161816
Alignment:
Q  305 tcattcaactatgaattcctatgagtattcttcttatgaatacaactatgcttgctatcttgcttacatctatgatcttcat 386  Q
    |||||||| |||||||| ||| |||||||||||| || ||||||  ||||||  |||||||||||||| |||||||||||||    
T  2161896 tcattcaa-tatgaatttctacgagtattcttctcataaatacacatatgctctctatcttgcttacaactatgatcttcat 2161816  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 379
Target Start/End: Original strand, 5377058 - 5377086
Alignment:
Q  351 tatgcttgctatcttgcttacatctatga 379  Q
    |||||||||||||||||||||||||||||    
T  5377058 tatgcttgctatcttgcttacatctatga 5377086  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 379
Target Start/End: Original strand, 5378913 - 5378941
Alignment:
Q  351 tatgcttgctatcttgcttacatctatga 379  Q
    |||||||||||||||||||||||||||||    
T  5378913 tatgcttgctatcttgcttacatctatga 5378941  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 323 - 386
Target Start/End: Complemental strand, 31155610 - 31155548
Alignment:
Q  323 ctatgagtattcttcttatgaatacaactatgcttgctatcttgcttacatctatgatcttcat 386  Q
    |||||||||||||||| |||||||||||||||||| |||| || ||||||||||||||||||||    
T  31155610 ctatgagtattcttctcatgaatacaactatgctt-ctatttttcttacatctatgatcttcat 31155548  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 288
Target Start/End: Complemental strand, 31155683 - 31155636
Alignment:
Q  241 ctccaagttactctataaataagctacctcattgtaccattcaatcat 288  Q
    |||||| ||||||||||||| || ||||||||||||||||||||||||    
T  31155683 ctccaaattactctataaattagatacctcattgtaccattcaatcat 31155636  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 375
Target Start/End: Complemental strand, 20516040 - 20515968
Alignment:
Q  302 tattcattcaactatgaattcctatgagtattcttcttatgaatacaactatgcttgctatcttgcttacatct 375  Q
    ||||||||||| |||||||| |||||||||||||||| |||| ||||  |||| |  |||||||||||||||||    
T  20516040 tattcattcaa-tatgaatttctatgagtattcttctcatgattacacatatgttctctatcttgcttacatct 20515968  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 379
Target Start/End: Original strand, 29758300 - 29758328
Alignment:
Q  351 tatgcttgctatcttgcttacatctatga 379  Q
    |||||||||||||||||||||||||||||    
T  29758300 tatgcttgctatcttgcttacatctatga 29758328  T

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Target: scaffold0286 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 386
Target Start/End: Original strand, 15210 - 15290
Alignment:
Q  305 tcattcaactatgaattcctatgagtattcttcttatgaatacaactatgcttgctatcttgcttacatctatgatcttcat 386  Q
    |||||||| |||||||| ||| |||||||||||| || ||||||  ||||||  |||||||||||||| |||||||||||||    
T  15210 tcattcaa-tatgaatttctacgagtattcttctcataaatacacatatgctctctatcttgcttacaactatgatcttcat 15290  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 5292625 - 5292707
Alignment:
Q  20 acaaaaagtatattgatagtgtctattgcactccatagagaacaaaaagaagtgaaatcaaaatccttcatacatatccatga 102  Q
    ||||| |||||||||||||||||||||   |||| | ||||||| |||||| ||||||| |||| ||||| ||| ||||||||    
T  5292625 acaaagagtatattgatagtgtctattaagctcctttgagaacataaagaattgaaatcgaaattcttcaaacaaatccatga 5292707  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 343
Target Start/End: Original strand, 1914085 - 1914165
Alignment:
Q  264 ctacctcattgtaccattcaatcattctttta-tcggtct-attcattcaactatgaattcctatgagtattcttcttatga 343  Q
    |||||||||||||||||||||||| ||||||| ||  ||| |||||||| ||||||| || ||||||||| |||||| ||||    
T  1914085 ctacctcattgtaccattcaatca-tcttttattcaatctaattcattctactatgagtttctatgagtaatcttctcatga 1914165  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 379
Target Start/End: Original strand, 5567606 - 5567634
Alignment:
Q  351 tatgcttgctatcttgcttacatctatga 379  Q
    |||||||||||||||||||||||||||||    
T  5567606 tatgcttgctatcttgcttacatctatga 5567634  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 379
Target Start/End: Original strand, 30224410 - 30224438
Alignment:
Q  351 tatgcttgctatcttgcttacatctatga 379  Q
    |||||||||||||||||||||||||||||    
T  30224410 tatgcttgctatcttgcttacatctatga 30224438  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 379
Target Start/End: Complemental strand, 36535902 - 36535874
Alignment:
Q  351 tatgcttgctatcttgcttacatctatga 379  Q
    |||||||||||||||||||||||||||||    
T  36535902 tatgcttgctatcttgcttacatctatga 36535874  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 28014324 - 28014292
Alignment:
Q  351 tatgcttgctatcttgcttacatctatgatctt 383  Q
    |||||||||||||||||||||||||||||||||    
T  28014324 tatgcttgctatcttgcttacatctatgatctt 28014292  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 25471822 - 25471790
Alignment:
Q  351 tatgcttgctatcttgcttacatctatgatctt 383  Q
    ||||||||||||||| |||||||||||||||||    
T  25471822 tatgcttgctatctttcttacatctatgatctt 25471790  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 28124638 - 28124606
Alignment:
Q  351 tatgcttgctatcttgcttacatctatgatctt 383  Q
    |||||||||| ||||||||||||||||||||||    
T  28124638 tatgcttgctctcttgcttacatctatgatctt 28124606  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 28126465 - 28126433
Alignment:
Q  351 tatgcttgctatcttgcttacatctatgatctt 383  Q
    |||||||||| ||||||||||||||||||||||    
T  28126465 tatgcttgctctcttgcttacatctatgatctt 28126433  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 23689489 - 23689532
Alignment:
Q  340 atgaatacaactatgcttgctatcttgcttacatctatgatctt 383  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||    
T  23689489 atgaatataactatgctagctatcttgcttacatctgtgatctt 23689532  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 16808629 - 16808597
Alignment:
Q  351 tatgcttgctatcttgcttacatctatgatctt 383  Q
    |||||||||| ||||||||||||||||||||||    
T  16808629 tatgcttgctctcttgcttacatctatgatctt 16808597  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 23689402 - 23689445
Alignment:
Q  253 ctataaataagctacctcattgtaccattcaatcattcttttatc 297  Q
    |||||||||||||||  |||||||||||||||||| |||||||||    
T  23689402 ctataaataagctactccattgtaccattcaatca-tcttttatc 23689445  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 379
Target Start/End: Original strand, 7040541 - 7040569
Alignment:
Q  351 tatgcttgctatcttgcttacatctatga 379  Q
    |||||||||||||||||||||||||||||    
T  7040541 tatgcttgctatcttgcttacatctatga 7040569  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 379
Target Start/End: Original strand, 18656288 - 18656316
Alignment:
Q  351 tatgcttgctatcttgcttacatctatga 379  Q
    |||||||||||||||||||||||||||||    
T  18656288 tatgcttgctatcttgcttacatctatga 18656316  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 379
Target Start/End: Complemental strand, 23566420 - 23566392
Alignment:
Q  351 tatgcttgctatcttgcttacatctatga 379  Q
    |||||||||||||||||||||||||||||    
T  23566420 tatgcttgctatcttgcttacatctatga 23566392  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 383
Target Start/End: Original strand, 52518940 - 52518972
Alignment:
Q  351 tatgcttgctatcttgcttacatctatgatctt 383  Q
    |||||||||| ||||||||||||||||||||||    
T  52518940 tatgcttgctctcttgcttacatctatgatctt 52518972  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 379
Target Start/End: Original strand, 1140181 - 1140209
Alignment:
Q  351 tatgcttgctatcttgcttacatctatga 379  Q
    |||||||||||||||||||||||||||||    
T  1140181 tatgcttgctatcttgcttacatctatga 1140209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 379
Target Start/End: Complemental strand, 17402833 - 17402805
Alignment:
Q  351 tatgcttgctatcttgcttacatctatga 379  Q
    |||||||||||||||||||||||||||||    
T  17402833 tatgcttgctatcttgcttacatctatga 17402805  T

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