View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4928-Insertion-5 (Length: 349)
Name: NF4928-Insertion-5
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928-Insertion-5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 166; Significance: 8e-89; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 29461948 - 29461783
Alignment:
| Q |
10 |
accaagattctttctttagctagtcacaggtcaactcttaaactgacacacagcacacatttatcaataataatctgccacttcttataacaacacacac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29461948 |
accaagattctttctttagctagtcacaggtcaactcttaaactgacacacagcacacatttatcaataataatctgccacttcttataacaacacacac |
29461849 |
T |
|
| Q |
110 |
atcgtatctatttcttctattggatctataaaacaaccttaggcacaaggaatggcagtcaaagtc |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29461848 |
atcgtatctatttcttctattggatctataaaacaaccttaggcacaaggaatggcagtcaaagtc |
29461783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 176 - 349
Target Start/End: Complemental strand, 29457149 - 29456976
Alignment:
| Q |
176 |
tacagcagaaaaggaataatagtccacattatgatattacaatataaaacataccttgtagaaaaaatatcataatttttagtctgagcacgtattcaag |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29457149 |
tacagcagaaaaggaataatagtccacattatgatattacaacataaaacataccttgtagaaaaaatatcataatttttagtctgagcacgtattcaag |
29457050 |
T |
|
| Q |
276 |
acatgatnnnnnnngggtgtttttgtgtgaaaatactttgtaggtttcttttgcgagtacaaatttatgcagta |
349 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29457049 |
acatgataaaaaaagggtgtttttgtgtgaaaatactttgtaggtttcttttgcgagtacaaatttatgcagta |
29456976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 29449223 - 29449134
Alignment:
| Q |
156 |
aaggaatggcagtcaaagtctacagcagaaaaggaataatagtccacattatgatattacaatataaaacataccttgtagaaaaaatat |
245 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||| ||| ||||||| |||||||||||||| ||||||| || ||||||||||||||| |
|
|
| T |
29449223 |
aagggatggcattcaaagtctacagcataaaaggattaagagtccaccttatgatattacaacataaaacttaatttgtagaaaaaatat |
29449134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 29449109 - 29449062
Alignment:
| Q |
294 |
gtttttgtgtgaaaatactttgtaggtttcttttgcgagtacaaattt |
341 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| |||||| |||| |
|
|
| T |
29449109 |
gtttttgtgtgaaaatgccttgtaggtttcttttgcaagtacatattt |
29449062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University