View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928_1D_high_14 (Length: 261)

Name: NF4928_1D_high_14
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928_1D_high_14
NF4928_1D_high_14
[»] chr7 (1 HSPs)
chr7 (34-252)||(14710572-14710790)
[»] chr2 (3 HSPs)
chr2 (33-252)||(1925040-1925259)
chr2 (34-243)||(25815198-25815407)
chr2 (34-252)||(19704714-19704929)
[»] chr5 (2 HSPs)
chr5 (34-252)||(22370669-22370888)
chr5 (33-252)||(19304541-19304760)
[»] chr6 (1 HSPs)
chr6 (54-252)||(16811101-16811299)
[»] chr3 (1 HSPs)
chr3 (34-252)||(29899685-29899903)
[»] chr1 (6 HSPs)
chr1 (34-252)||(14715033-14715251)
chr1 (36-252)||(16765094-16765310)
chr1 (87-237)||(22002125-22002275)
chr1 (87-237)||(22008396-22008546)
chr1 (93-252)||(13246252-13246411)
chr1 (35-72)||(18491417-18491454)
[»] scaffold0021 (1 HSPs)
scaffold0021 (34-252)||(156-374)
[»] chr8 (3 HSPs)
chr8 (34-252)||(19463376-19463593)
chr8 (34-252)||(19561055-19561272)
chr8 (34-72)||(18394730-18394768)
[»] scaffold0285 (1 HSPs)
scaffold0285 (33-252)||(8951-9170)
[»] chr4 (1 HSPs)
chr4 (33-72)||(17735975-17736014)
[»] scaffold0047 (1 HSPs)
scaffold0047 (36-72)||(57679-57715)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 34 - 252
Target Start/End: Original strand, 14710572 - 14710790
Alignment:
Q  34 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||||||||||    
T  14710572 cactacaacattttggccctacgacaacgcctaaattttggaaggtaaaaaaaccgttttggtagagtcccatgaacaacgattttctgattctgttgta 14710671  T
Q  134 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14710672 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgagaacggatttttgtttgttattttcgtcaacacgta 14710771  T
Q  234 ttaaccgttccagtataat 252  Q
    |||||||||| ||||||||    
T  14710772 ttaaccgttctagtataat 14710790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 33 - 252
Target Start/End: Complemental strand, 1925259 - 1925040
Alignment:
Q  33 tcactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgt 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       |||| |||||||||||||||||||||||||||||||||||||||||    
T  1925259 tcactacaacattttggccctacgacaacgcctaaattttggaaggtaaaaaaaccgttttggtagagtcccatgaacaacgattttctgattctgttgt 1925160  T
Q  133 aatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  1925159 aatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgagaacagatttttgtttgttattttcgtcaacacgt 1925060  T
Q  233 attaaccgttccagtataat 252  Q
    ||||||||||| ||||||||    
T  1925059 attaaccgttctagtataat 1925040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 34 - 243
Target Start/End: Complemental strand, 25815407 - 25815198
Alignment:
Q  34 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         || ||  |||||||||||| ||||||||||||||||| ||||||     
T  25815407 cactacaacattttggccctacgacaacgcctaaattttggaaggtaaaaaaattgttttcatagagtcccatggacaacgattttctgattttgttgtg 25815308  T
Q  134 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 233  Q
     |||| |||  ||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||    
T  25815307 gtaggatatgctattttttcaatttatttgtaacaactcaaaagtgttgtggtataagaaacgagaacggatttttatttgttatttttgtcaacatgta 25815208  T
Q  234 ttaaccgttc 243  Q
    ||||| ||||    
T  25815207 ttaactgttc 25815198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 34 - 252
Target Start/End: Original strand, 19704714 - 19704929
Alignment:
Q  34 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 133  Q
    |||||||||||||||| ||    |||||||||||||||||||||||       ||||  || |||||||||||| ||||||||||||||||| |||||||    
T  19704714 cactacaacattttggtcc----acaacgcctaaattttggaaggtaaaaaaaccgttctgatagagtcccatggacaacgattttctgattttgttgta 19704809  T
Q  134 atagggtataatattttttcaatttattc-gtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgt 232  Q
     ||  |||| ||||||||| | ||| ||  ||||| |||| |||||||||||||||||||||| | ||||||||||| |||||||||| |||||||| ||    
T  19704810 gtaatgtatgatattttttaatttttttttgtaacgactcaaaagcgttgtggtataagaaacaagaacggatttttatttgttatttccgtcaacatgt 19704909  T
Q  233 attaaccgttccagtataat 252  Q
    |||||| ||||  |||||||    
T  19704910 attaactgttctggtataat 19704929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 34 - 252
Target Start/End: Original strand, 22370669 - 22370888
Alignment:
Q  34 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 133  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||       |||| |||||||||||||||||||||||||||||||||| |||||||    
T  22370669 cactacaacattttgaccctacgacaacgcctaaattttgaaaggtaaaaaaaccgttttggtagagtcccatgaacaacgattttctgattatgttgta 22370768  T
Q  134 atagggtataatatttt-ttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgt 232  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22370769 atagggtataatatttttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgagaacggatttttgtttgttattttcgtcaacacgt 22370868  T
Q  233 attaaccgttccagtataat 252  Q
    ||||||| ||| ||||||||    
T  22370869 attaaccattctagtataat 22370888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 33 - 252
Target Start/End: Original strand, 19304541 - 19304760
Alignment:
Q  33 tcactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgt 132  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||         ||  ||||||||| ||||| ||||||||||||| |||||||| |    
T  19304541 tcactacaatattttggccctacaacaacgcctaaattttggaaggtaaaaaaattgttctggtagagtaccatggacaacgattttctaattctgtttt 19304640  T
Q  133 aatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgt 232  Q
    |||||  ||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||| |     
T  19304641 aatagcatatgatattttttcaatttatttgtaacaactcaaaagcgttgtggtataagaaacgagaacagatttttatttgttatttttgtcaacatgc 19304740  T
Q  233 attaaccgttccagtataat 252  Q
    |||||| ||||  |||||||    
T  19304741 attaactgttctggtataat 19304760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 54 - 252
Target Start/End: Complemental strand, 16811299 - 16811101
Alignment:
Q  54 acgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgtaatagggtataatattttttc 153  Q
    |||| |||||||||||||||||||||       ||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||    
T  16811299 acgataacgcctaaattttggaaggtaaaaaaaccgtcttggtagagtcccatggacaacgattttctgattatgttgtaataggatataatattttttc 16811200  T
Q  154 aatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgtattaaccgttccagtataat 252  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  16811199 aatttattcgtaacaactcgaaagcgttgtggtataagaaacgagaacggatttttgtttgttatattcgtcaatacgtattaaccgttctagtataat 16811101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 34 - 252
Target Start/End: Original strand, 29899685 - 29899903
Alignment:
Q  34 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 133  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||       ||||| ||||||||||| ||| ||||||||||||| ||| |||||||    
T  29899685 cactacaacattttggccctacgacaacgcctaaattttggaaagtaaaaaaaccgtcctggtagagtccgatgcacaacgattttctaattttgttgta 29899784  T
Q  134 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 233  Q
     |||||||  ||||||||| ||||| ||  |||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||| |||    
T  29899785 ttagggtaggatattttttaaatttttttataacaactcgaaagcgttgtggtataagaaacgagaacggatttttatttattactttcgtcaacatgta 29899884  T
Q  234 ttaaccgttccagtataat 252  Q
    ||||| ||||  |||||||    
T  29899885 ttaactgttctggtataat 29899903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 34 - 252
Target Start/End: Complemental strand, 14715251 - 14715033
Alignment:
Q  34 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 133  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||       ||||| ||||||||||| ||| ||||||||||||| ||| |||||||    
T  14715251 cactacaacattttggccctacgacaacgcctaaattttggaaagtaaaaaaaccgtcctggtagagtccgatgcacaacgattttctaattttgttgta 14715152  T
Q  134 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 233  Q
     |||||||  ||||||||| ||||| ||  |||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||| |||    
T  14715151 ttagggtaggatattttttaaatttttttataacaactcgaaagcgttgtggtataagaaacgagaacggatttttatttattactttcgtcaacatgta 14715052  T
Q  234 ttaaccgttccagtataat 252  Q
    ||||| ||||  |||||||    
T  14715051 ttaactgttctggtataat 14715033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 36 - 252
Target Start/End: Complemental strand, 16765310 - 16765094
Alignment:
Q  36 ctacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgtaat 135  Q
    ||||||||||||||| ||||||||||||||||||||||||||||         ||  ||||||||||||||| |||||||||||||||||||||| || |    
T  16765310 ctacaacattttggctctacgacaacgcctaaattttggaaggtaaaaaaattgttctggtagagtcccatggacaacgattttctgattctgttttagt 16765211  T
Q  136 agggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgtatt 235  Q
    || |||| ||||||||| |||||||| |||||||||  |||||||||||||||||||||||| ||||||||||| |||||||||||  |||||| |||||    
T  16765210 agcgtatgatattttttaaatttatttgtaacaactgaaaagcgttgtggtataagaaacgagaacggatttttatttgttatttttatcaacatgtatt 16765111  T
Q  236 aaccgttccagtataat 252  Q
    ||||||||  |||||||    
T  16765110 aaccgttctggtataat 16765094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 87 - 237
Target Start/End: Original strand, 22002125 - 22002275
Alignment:
Q  87 ccgtcttggtagagtcccatgaacaacgattttctgattctgttgtaatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggt 186  Q
    ||||| ||||||||||||||| ||||||||||||||||| ||||||| |||||||| ||||||||| ||||| || ||||| |||| ||||||||||| |    
T  22002125 ccgtcctggtagagtcccatggacaacgattttctgattttgttgtagtagggtatgatattttttaaatttttttgtaacgactcaaaagcgttgtgat 22002224  T
Q  187 ataagaaacgaaaacggatttttgtttgttattttcgtcaacacgtattaa 237  Q
    ||||||||| | ||||||||||| ||||||||||||||||||| |||||||    
T  22002225 ataagaaacaagaacggatttttatttgttattttcgtcaacatgtattaa 22002275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 87 - 237
Target Start/End: Original strand, 22008396 - 22008546
Alignment:
Q  87 ccgtcttggtagagtcccatgaacaacgattttctgattctgttgtaatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggt 186  Q
    ||||| ||||||||||||||| ||||||||||||||||| ||||||| |||||||| ||||||||| ||||| || ||||| |||| ||||||||||| |    
T  22008396 ccgtcctggtagagtcccatggacaacgattttctgattttgttgtagtagggtatgatattttttaaatttttttgtaacgactcaaaagcgttgtgat 22008495  T
Q  187 ataagaaacgaaaacggatttttgtttgttattttcgtcaacacgtattaa 237  Q
    ||||||||| | ||||||||||| ||||||||||||||||||| |||||||    
T  22008496 ataagaaacaagaacggatttttatttgttattttcgtcaacatgtattaa 22008546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 93 - 252
Target Start/End: Original strand, 13246252 - 13246411
Alignment:
Q  93 tggtagagtcccatgaacaacgattttctgattctgttgtaatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataaga 192  Q
    ||||||||| ||||| |||||||||||||||||||| |||| || ||||| |||||||||||||||||| |||||||||| ||||| |||| || |||||    
T  13246252 tggtagagttccatggacaacgattttctgattctgctgtagtaaggtatgatattttttcaatttatttgtaacaactcaaaagcattgtagtttaaga 13246351  T
Q  193 aacgaaaacggatttttgtttgttattttcgtcaacacgtattaaccgttccagtataat 252  Q
    |||  ||| | |||||| ||||||||||| |||| || |||||||| ||||  |||||||    
T  13246352 aacataaatgaatttttatttgttatttttgtcagcatgtattaactgttctggtataat 13246411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 18491454 - 18491417
Alignment:
Q  35 actacaacattttggccctacgacaacgcctaaatttt 72  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  18491454 actacaacattttgggcctacgacaacgcctaattttt 18491417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 34 - 252
Target Start/End: Complemental strand, 374 - 156
Alignment:
Q  34 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         ||  ||||||||| ||||| ||||||||||||| |||||||| ||    
T  374 cactacaacattttggccctacgacaacgcctaaattttggaaggtaaaaatattgttctggtagagtaccatggacaacgattttctaattctgtttta 275  T
Q  134 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 233  Q
    ||||  ||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||| || |||||||| ||||||||||| ||||||| | |    
T  274 atagcatatgatattttttcaatttatttgtaacaactcaaaagcgttgtggtataagaaacgagaatggatttttatttgttatttttgtcaacatgca 175  T
Q  234 ttaaccgttccagtataat 252  Q
    ||||| ||||  |||||||    
T  174 ttaactgttctggtataat 156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 34 - 252
Target Start/End: Original strand, 19463376 - 19463593
Alignment:
Q  34 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 133  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||       || || ||||||||||||||| ||||||||||||||||| |||||||    
T  19463376 cactacaacattttggctctacgacaacgcctaaatttcggaaggtaaaaaaaccctcctggtagagtcccatggacaacgattttctgattttgttgta 19463475  T
Q  134 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 233  Q
     |||||||| ||||||||||||||| ||  |||| |||| ||||||||||| |||||||||| | ||||||||||| ||||||||||||| ||||| |||    
T  19463476 gtagggtatgatattttttcaattt-tttataacgactcaaaagcgttgtgatataagaaacaagaacggatttttatttgttattttcggcaacatgta 19463574  T
Q  234 ttaaccgttccagtataat 252  Q
    ||||| |||| ||||||||    
T  19463575 ttaactgttctagtataat 19463593  T

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Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 34 - 252
Target Start/End: Original strand, 19561055 - 19561272
Alignment:
Q  34 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 133  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||       || || ||||||||||||||| ||||||||||||||||| |||||||    
T  19561055 cactacaacattttggctctacgacaacgcctaaatttcggaaggtaaaaaaaccctcctggtagagtcccatggacaacgattttctgattttgttgta 19561154  T
Q  134 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 233  Q
     |||||||| ||||||||||||||| ||  |||| |||| ||||||||||| |||||||||| | ||||||||||| ||||||||||||| ||||| |||    
T  19561155 gtagggtatgatattttttcaattt-tttataacgactcaaaagcgttgtgatataagaaacaagaacggatttttatttgttattttcggcaacatgta 19561253  T
Q  234 ttaaccgttccagtataat 252  Q
    ||||| |||| ||||||||    
T  19561254 ttaactgttctagtataat 19561272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 18394730 - 18394768
Alignment:
Q  34 cactacaacattttggccctacgacaacgcctaaatttt 72  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  18394730 cactacaacattttagccctacgacaacgcctaattttt 18394768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 33 - 252
Target Start/End: Complemental strand, 9170 - 8951
Alignment:
Q  33 tcactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgt 132  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||         ||  ||||||||||||||| || ||||||||||||||||||| |    
T  9170 tcactacaacattttggctctacgacaacgcctaaattttggaaggtaaaaaaattgttctggtagagtcccatggactacgattttctgattctgtttt 9071  T
Q  133 aatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgt 232  Q
    | ||| |||| ||||||||| |||||||| |||||||||  |||||||||||||||||||||| | ||||||||||| |||||||||||  |||||| ||    
T  9070 agtagcgtatgatattttttaaatttatttgtaacaactaaaaagcgttgtggtataagaaacaagaacggatttttatttgttatttttttcaacatgt 8971  T
Q  233 attaaccgttccagtataat 252  Q
    |||||||||||  |||||||    
T  8970 attaaccgttctggtataat 8951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 17736014 - 17735975
Alignment:
Q  33 tcactacaacattttggccctacgacaacgcctaaatttt 72  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  17736014 tcactacaacattttggccctacgacaacgtctaattttt 17735975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 57715 - 57679
Alignment:
Q  36 ctacaacattttggccctacgacaacgcctaaatttt 72  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  57715 ctacaacattttggctctacgacaacgcctaattttt 57679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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