View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_1D_high_19 (Length: 253)
Name: NF4928_1D_high_19
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_high_19 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 36953036 - 36953267
Alignment:
| Q |
20 |
aaattatcaaaatactactaaatagttaaacctgtatgtttgaatcctttaaaa--atagtgcaagtgaatcgtttgaagctagtgtagacatatattgt |
117 |
Q |
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| T |
36953036 |
aaattctcaaagtactactaaatagttaaacctgaatgtttgaatcctttaaaacaatagtgcaagtgaatcatttgaaactagtgtacacataaattat |
36953135 |
T |
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| Q |
118 |
tgcagttctaagttgttggaaagtgggcaaagaatagtagagaaaagatcataaaatcattgctatgggtaaggattttgggttaaatgatttatctaag |
217 |
Q |
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| T |
36953136 |
tgcagttttaagttgttggaaagtgggaaaagaataatagag-aaagatcataaaatcattg--ttgggtaaggattttggg-tgaatgatttagctaag |
36953231 |
T |
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| Q |
218 |
tgaatcaaccagatctatctatgcatacataaactt |
253 |
Q |
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| T |
36953232 |
tgaatcaactagatttatctatgcatgcataaactt |
36953267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 36947890 - 36947938
Alignment:
| Q |
40 |
aatagttaaacctgtatgtttgaatcctttaaaaatagtgcaagtgaat |
88 |
Q |
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| T |
36947890 |
aatagttaaacctgtatgtttgaatcctttaaaaatagtgcaagtgaat |
36947938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 36947443 - 36947481
Alignment:
| Q |
6 |
aagaggcgaggagaaaattatcaaaatactactaaatag |
44 |
Q |
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| T |
36947443 |
aagaggcgaggagaaaattatcaaaatactactaaatag |
36947481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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