View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_1D_high_2 (Length: 459)
Name: NF4928_1D_high_2
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_high_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 21 - 459
Target Start/End: Complemental strand, 16509662 - 16509224
Alignment:
| Q |
21 |
tcaaaaaccacatcaacatcagaactttctaccttcgtttgaaccgttgattcagcctccattgatttcatcgattcatcaacagaagcaactttcgtgt |
120 |
Q |
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| T |
16509662 |
tcaaaaactacatcaacatcagaactttctaccttcatttgaatcgttgattcagcttccattgatttcaacgattcatcaacagaagcaactttcgtgt |
16509563 |
T |
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| Q |
121 |
tcgtagctttcaaaaaatcatcgaacgcaagcatcgaacgtggttcatcagattccgtcttacactccaccaccgtctccgccgccggaggttgaaaagc |
220 |
Q |
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| T |
16509562 |
tcgtagctttcaaaaaatcatcgaacgcaagcatcgaacgtcgttcatcagattccgtcttacactccaccaccgtctccgccgccggaggttgaaaagc |
16509463 |
T |
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| Q |
221 |
gacggtgacagattttgcctcatcttcaaattcttgaggttcgtctttgactttgatgatcgaagctttgcatgcatcagactcgtcggagttagggttt |
320 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16509462 |
gacggtgacagattttgcctcatcttcaaattcgcgcggttcgtctttgactttgatgatcgaagctttgcatgcatcagactcgtcggagttagggttt |
16509363 |
T |
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| Q |
321 |
tgattcggcggcgttgcaagaacacgagcgccgccgccggtgctagttcgggcgcggacgacggtgataggctgagcgacgagaacggggtttccatttc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
16509362 |
tgattcggcggcgttgcaagaacacgagcgccgccgccggtgctggttcgggcgcggacgacggtgagaggctgagcgacgagaacggggtttccgtttc |
16509263 |
T |
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| Q |
421 |
taaaaacgacattgtcgttttccattttgcggaagaaat |
459 |
Q |
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| T |
16509262 |
taaaaacgacattgtcgttttccattttgcggaagaaat |
16509224 |
T |
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