View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_1D_high_30 (Length: 201)
Name: NF4928_1D_high_30
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 26309132 - 26309296
Alignment:
| Q |
24 |
tcatgctcaattatagtgcaataacctaaacaatcaaacataatcatgtaaattatattttgcttaagatcatatatgtaccacatattttgaaaaagaa |
123 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
26309132 |
tcatgctcaagtatagtgcaataacctaaacaatcaaacataatcatgtaaattatattttgcttaagatcatatatgtaccacatattttggaaaataa |
26309231 |
T |
|
| Q |
124 |
actcacatgtatgaaatatatttagacgaatggaactcatatcttggacaatacaagctttgttc |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
26309232 |
actcacatgtatgaaatatatttagacgaatggaactcatattttggacaatacaagctttgttc |
26309296 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 5146541 - 5146607
Alignment:
| Q |
25 |
catgctcaattatagtgcaataacctaaacaatcaaacataatcatgtaaattatattttgcttaag |
91 |
Q |
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| T |
5146541 |
catgctcaattctagtgcaataacctagactatcaaacatgcttagggaaattaaattttgcttaag |
5146607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 16625444 - 16625404
Alignment:
| Q |
24 |
tcatgctcaattatagtgcaataacctaaacaatcaaacat |
64 |
Q |
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|||||||||||| ||||||||||||||| || ||||||||| |
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| T |
16625444 |
tcatgctcaattctagtgcaataacctagactatcaaacat |
16625404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 28836928 - 28836968
Alignment:
| Q |
24 |
tcatgctcaattatagtgcaataacctaaacaatcaaacat |
64 |
Q |
| |
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|||||||||||| ||||||||||||||| || ||||||||| |
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| T |
28836928 |
tcatgctcaattctagtgcaataacctagactatcaaacat |
28836968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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