View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4928_1D_high_5 (Length: 411)
Name: NF4928_1D_high_5
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 15 - 385
Target Start/End: Original strand, 38527003 - 38527373
Alignment:
| Q |
15 |
gacatcataacaacagtaagaagccacccttttgtaaatgctatcacaaaacccccaataaatgttgctattagctgcagaaacttcccaacctgttttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38527003 |
gacatcataacaacagtaagaagccacccttttgtaaatgctatcacaaaacccccaataaatgttgctattagctgcagaaacttcccaacctgttttt |
38527102 |
T |
|
| Q |
115 |
tcaaacacaaaattaaaccttcaaattaagtaaattaaattaaaaccaactttttactccaaaatcttactaattttcataccttctcacccatggcatc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38527103 |
tcaaacacaaaattaaaccttcaaattaagtaaattaaattcaaaccaactttttactccaaaatcttactaattttcataccttctcacccatggcatc |
38527202 |
T |
|
| Q |
215 |
ttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaacatcttgtcttaatattgttttcaaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38527203 |
ttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaacatcttgtcttaatattgttttcaaa |
38527302 |
T |
|
| Q |
315 |
tacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaacaactcacctctgaaaatacaaa |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38527303 |
tacaatcctcttattcttgcagcttgtctttctcctgttaccatccaacaactcacctctgaaaatacaaa |
38527373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 190 - 411
Target Start/End: Original strand, 38568479 - 38568700
Alignment:
| Q |
190 |
ttcataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaac |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568479 |
ttcataccttctcacccatggcatcttgaataagaacagtatcacctgacattctccctataacttctcctgtgtttgtttctttatcaaagaaagtaac |
38568578 |
T |
|
| Q |
290 |
atcttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaacaactcacctctgaaaatacaaaaaca |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568579 |
atcttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaacaactcacctctgaaaatacaaaaaca |
38568678 |
T |
|
| Q |
390 |
atttctcacaagtttagtgtct |
411 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
38568679 |
atttctcacaagtttagtgtct |
38568700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 38568144 - 38568266
Alignment:
| Q |
15 |
gacatcataacaacagtaagaagccacccttttgtaaatgctatcacaaaacccccaataaatgttgctattagctgcagaaacttcccaacctgttttt |
114 |
Q |
| |
|
||||||| ||||||||||||||||| ||| | |||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38568144 |
gacatcaatacaacagtaagaagccatcctctggtaaatgctatcacaaaaccgccaacaaatgttgctattagctgcagaaatttcccaacctgttttt |
38568243 |
T |
|
| Q |
115 |
tcaaacacaaaattaaaccttca |
137 |
Q |
| |
|
||||||| ||||| ||||||||| |
|
|
| T |
38568244 |
tcaaacataaaatgaaaccttca |
38568266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 193 - 376
Target Start/End: Complemental strand, 51198113 - 51197930
Alignment:
| Q |
193 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaacatc |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || || ||||| |||||||||||| | ||||| |
|
|
| T |
51198113 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttccaacaacctctccagtattagtttccttatcaaagaaactcacatc |
51198014 |
T |
|
| Q |
293 |
ttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaacaactcacctctga |
376 |
Q |
| |
|
||| || || ||||||| | || || | ||| ||||||||||| ||||| || || |||| |||||| ||| ||| |||||| |
|
|
| T |
51198013 |
ttgcctcaaaattgtttggaggtataagcttctgattcttgcagcctgtctctcaccggtaatcatccagcaagtcaactctga |
51197930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 193 - 335
Target Start/End: Complemental strand, 51144458 - 51144316
Alignment:
| Q |
193 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaacatc |
292 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||| ||||||||||| ||||| ||||| || || ||||| |||||||||||| | ||||| |
|
|
| T |
51144458 |
ataccttctcacccatggcatccttaataagaacagtatcacctgacattcttccaacaacctctcccgtattagtttccttatcaaagaaactcacatc |
51144359 |
T |
|
| Q |
293 |
ttgtcttaatattgttttcaaatacaatcctcttattcttgca |
335 |
Q |
| |
|
||| || || |||||||| | ||| || ||||| ||||||||| |
|
|
| T |
51144358 |
ttgcctcaaaattgttttaagatataaccctctaattcttgca |
51144316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 190 - 375
Target Start/End: Complemental strand, 51211642 - 51211457
Alignment:
| Q |
190 |
ttcataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaac |
289 |
Q |
| |
|
|||||||||| || |||||||| |||||||||||||| |||||||| ||||||||||| ||||| || || | |||||||| || ||||||||| | | |
|
|
| T |
51211642 |
ttcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactgat |
51211543 |
T |
|
| Q |
290 |
atcttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaacaactcacctctg |
375 |
Q |
| |
|
|||||| ||||| |||| ||| | || ||| | |||||||||||||| ||||| || ||||| | |||||||||| |||||||| |
|
|
| T |
51211542 |
atcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcccctgtgatcatccaacaagacacctctg |
51211457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 335
Target Start/End: Original strand, 29938485 - 29938627
Alignment:
| Q |
193 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaacatc |
292 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||| ||||| | ||| ||||| ||||| ||||| ||||| |||||||||||||| || | ||||| |
|
|
| T |
29938485 |
ataccttctcccccatggcatctttaataagaacagtgtcacctgccatccttccaacaacctctccagtgttagtttctttatcaaaaaagctcacatc |
29938584 |
T |
|
| Q |
293 |
ttgtcttaatattgttttcaaatacaatcctcttattcttgca |
335 |
Q |
| |
|
||| || || |||||||| | || || ||||| ||||||||| |
|
|
| T |
29938585 |
ttgcctcaaaattgttttaaggtataagcctctaattcttgca |
29938627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 335
Target Start/End: Complemental strand, 51155598 - 51155456
Alignment:
| Q |
193 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaacatc |
292 |
Q |
| |
|
|||||||||| ||||||||||||| ||| |||| |||||||| ||||| ||||| ||||| ||||| || || ||||| ||||||||||| | ||||| |
|
|
| T |
51155598 |
ataccttctcccccatggcatctttaattagaaatgtatcacctgacatccttccaacaacctctccagtattagtttccttatcaaagaagctcacatc |
51155499 |
T |
|
| Q |
293 |
ttgtcttaatattgttttcaaatacaatcctcttattcttgca |
335 |
Q |
| |
|
||| || || |||||||| | || || ||||| ||||||||| |
|
|
| T |
51155498 |
ttgcctcaaaattgttttaaggtataaccctctaattcttgca |
51155456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 193 - 364
Target Start/End: Complemental strand, 5764298 - 5764127
Alignment:
| Q |
193 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaacatc |
292 |
Q |
| |
|
||||||| || ||||||||||||||||| |||| || |||||||||||||| || | |||||||||||||||||||| | |||||||| | || ||| |
|
|
| T |
5764298 |
ataccttttctcccatggcatcttgaatgagaattgtgtcaccagacattctaccaattacttctcctgtgtttgtttcagtgtcaaagaatgcaatatc |
5764199 |
T |
|
| Q |
293 |
ttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaaca |
364 |
Q |
| |
|
|| ||||||| |||||||| ||||| | | || ||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
5764198 |
ctgctttaatatggttttcaagtacaaactacgaatccttgcagattgtctttctcctgtcaccatccaaca |
5764127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 193 - 364
Target Start/End: Original strand, 5833530 - 5833701
Alignment:
| Q |
193 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaacatc |
292 |
Q |
| |
|
||||||| || ||||| || |||||||| |||| || |||||||||||||| || | || ||||||||||||||||| |||||||||| | || ||| |
|
|
| T |
5833530 |
ataccttttctcccatagcctcttgaatgagaattgtgtcaccagacattctaccaattacctctcctgtgtttgtttcagtatcaaagaatgcaatatc |
5833629 |
T |
|
| Q |
293 |
ttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaaca |
364 |
Q |
| |
|
||| |||||| |||||||| ||||| | | || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5833630 |
ctgttgtaatatggttttcaagtacaagctacgaatccttgcagcttgtctttctcctgttaccatccaaca |
5833701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 204 - 364
Target Start/End: Complemental strand, 5821211 - 5821051
Alignment:
| Q |
204 |
cccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaacatcttgtcttaata |
303 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||| | ||| ||||| || ||| ||| | |||||| | | || |||||| ||| || |
|
|
| T |
5821211 |
cccatggcatcttgaatgagaatggtatcaccagacattcttccaataacctctccactggttgcttcagtgtcaaagtaggaaatatcttgctttagta |
5821112 |
T |
|
| Q |
304 |
ttgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaaca |
364 |
Q |
| |
|
| |||||||| ||||| || | || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5821111 |
tagttttcaagtacaagccacgaatccttgcagcttgtctttctcctgtcaccatccaaca |
5821051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 364
Target Start/End: Original strand, 49738535 - 49738706
Alignment:
| Q |
193 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaacatc |
292 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| || ||||| || |||||||| ||||| || | |||||||||| | |||||||| | | ||| |
|
|
| T |
49738535 |
ataccttctctcccatggcatcttgaataagaactgtgtcacctgatattcttccaacaacctcaacactgtttgtttccctgtcaaagaagcttatatc |
49738634 |
T |
|
| Q |
293 |
ttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaaca |
364 |
Q |
| |
|
||| ||||| |||| ||| | || || | | |||||||||||||||||| || || || ||||||||||| |
|
|
| T |
49738635 |
ttgccttaaaattgctttgaggtataaggcccgtattcttgcagcttgtctctccccggtgaccatccaaca |
49738706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 364
Target Start/End: Original strand, 29331233 - 29331404
Alignment:
| Q |
193 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaacatc |
292 |
Q |
| |
|
||||||| || ||||| || |||||||| |||| || |||||||||||||| | | || ||||||||||||||||| | |||||||| | || ||| |
|
|
| T |
29331233 |
ataccttttctcccatagcttcttgaatgagaattgtgtcaccagacattctactaattacctctcctgtgtttgtttcagtgtcaaagaatgcaatatc |
29331332 |
T |
|
| Q |
293 |
ttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaaca |
364 |
Q |
| |
|
|| ||||||| |||||||| ||||| | | || || |||| ||||||||||||||| ||||||||||| |
|
|
| T |
29331333 |
ctgctttaatatggttttcaagtacaaactacgaatcctcgcagattgtctttctcctgtcaccatccaaca |
29331404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University