View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_1D_high_7 (Length: 362)
Name: NF4928_1D_high_7
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 9 - 356
Target Start/End: Complemental strand, 56492588 - 56492241
Alignment:
| Q |
9 |
acttatagcctttgacatcaaaagaatgagcagcacctccagcatggtcgtggctttcgaaaacgacaacatcttgttcatatcttgccaacagtgctgc |
108 |
Q |
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| T |
56492588 |
acttatagcctttgacatcaaaagaatgagcagcacctccagcatggtcgtggctttcgaaaacgacaacatcttgttcatatcttgccaacagtgctgc |
56492489 |
T |
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| Q |
109 |
acaactcagtccaccaataccactcccaatcacaattacatctgtttctgtttcatctactttgttgctgctgtttcgcaccacaaccccacctttccta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56492488 |
acaactcagtccaccaataccactcccaatcacaattacatctgtttctgtttcatctactttgttgctgctgtttcgcaccacaaccccacctttccta |
56492389 |
T |
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| Q |
209 |
atcctcccattactatgactatgatgatcatcatcatcaattcttgaacagtatcttctcactctcattacattacaaggaaacacaccaacacttacac |
308 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56492388 |
atcctcccattactatgactatgatgatgatcatcatcaattcttgaacagtattttctcactctcattacattacaaggaaacacaccaacacttacac |
56492289 |
T |
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| Q |
309 |
ccctcatcgcattcatggcatggcatagcatggaaaccaaacaccaaa |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56492288 |
ccctcatcgcattcatggcatggcatagcatggaaaccaaacaccaaa |
56492241 |
T |
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