View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_1D_low_1 (Length: 641)
Name: NF4928_1D_low_1
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 611; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 2 - 624
Target Start/End: Complemental strand, 32685117 - 32684495
Alignment:
| Q |
2 |
ttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcagtttcttaatttcaactgtaacccttttaaaatcagc |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32685117 |
ttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcagtttcttaatttcaactgtaacccttttaaaatcagc |
32685018 |
T |
|
| Q |
102 |
ttctttctgcttttcaagtttatccagggcagtccgcgctgcattcaacaactccaatccagctgctggtttacaggttaattaatattaaagaactcaa |
201 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
32685017 |
ttctttctgcttttcaattttatccagggcagtccgcgctgcattcaacaactccaatccaactgctggtttataggttaattaatattaaagaactcaa |
32684918 |
T |
|
| Q |
202 |
attcaacaactccaatccaactgctggtttcttaatttctagaatggcgtggcaaaatttttattcaaataatttaagcatttcttttcgaattgatgag |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684917 |
attcaacaactccaatccaactgctggtttcttaatttctagaatggcgtggcaaaatttttattcaaataatttaagcatttcttttcgaattgatgag |
32684818 |
T |
|
| Q |
302 |
ttagatctatgaaagcggtatcatccgccaacactttagtagtctcagattcttatgattcgaggtttgtgatgtctcaagcaaaaatcatgtttaaggc |
401 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684817 |
ttagatctatgaaagcggtatcatccgccaacactttagtagtctcagattcttatgattcgaggtttgtgatgtctcaagcaaaaatcatgtttaaggc |
32684718 |
T |
|
| Q |
402 |
tgaatggaaagtatgaagaaaatcagaatagagaatgaacaagaaagaaaatgatcatgttaactagaaaatgatacactgatgcatcttatatagttgt |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684717 |
tgaatggaaagtatgaagaaaatcagaatagagaatgaacaagaaagaaaatgatcatgttaactagaaaatgatacactgatgcatcttatatagttgt |
32684618 |
T |
|
| Q |
502 |
agttttcgtctatgcaatcacgatctagctagttttcatcaatcttgagagggaatgttagttacaagctctccaactaagtatactgagatgtaagttt |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684617 |
agttttcgtctatgcaatcacgatctagctagttttcatcaatcttgagagggaatgttagttacaagctctccaactaagtatactgagatgtaagttt |
32684518 |
T |
|
| Q |
602 |
ctttgccaactgttttatgatgt |
624 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
32684517 |
ctttgccaactgttttatgatgt |
32684495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 391 - 624
Target Start/End: Original strand, 32559715 - 32559928
Alignment:
| Q |
391 |
atgtttaaggctgaatggaaagtatgaagaaaatcagaatagagaatgaacaagaaagaaaatgatcatgttaactagaaaatgatacactgatgcatct |
490 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32559715 |
atgtttaaggctgaatgaaaagtatgaagaaaatcagaatagagaatgaacaagaaagaa--------------------aatgatacactgatgcatct |
32559794 |
T |
|
| Q |
491 |
tatatagttgtagttttcgtctatgcaatcacgatctagctagttttcatcaatcttgagagggaatgttagttacaagctctccaactaagtatactga |
590 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32559795 |
tatatagttgtagttttcgtctatgcaatcacgatctagctagttttcatcaatcttgagagggaatgttagttacaagctctctaactaagtatactga |
32559894 |
T |
|
| Q |
591 |
gatgtaagtttctttgccaactgttttatgatgt |
624 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
32559895 |
gatgtaagtttctttgccaactgttttatgatgt |
32559928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 2 - 203
Target Start/End: Complemental strand, 32683407 - 32683211
Alignment:
| Q |
2 |
ttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcagtttcttaatttcaactgtaacccttttaaaatcagc |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
32683407 |
ttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcagtttcttaatttcaactgcagcccttttaaaatcagc |
32683308 |
T |
|
| Q |
102 |
ttctttctgcttttcaagtttatccagggcagtccgcgctgcattcaacaactccaatccagctgctggtttacaggttaattaatattaaagaactcaa |
201 |
Q |
| |
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|||| |||||||||||| || |||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
32683307 |
ttctctctgcttttcaatttcatccagggcagtacgcgctgcattcaacaactccaa-----ctgctggtttataggttaattaatattaaagaactcaa |
32683213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 237 - 393
Target Start/End: Original strand, 32559538 - 32559694
Alignment:
| Q |
237 |
tttctagaatggcgtggcaaaatttttattcaaataatttaagcatttcttttcgaattgatgagttagatctatgaaagcggtatcatccgccaacact |
336 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32559538 |
tttctagaatggcgtggcaaaaattttattcaaataatttaagcatttcttttcgaattgatgagttagatctatgaaagcggtatcatccgctaacact |
32559637 |
T |
|
| Q |
337 |
ttagtagtctcagattcttatgattcgaggtttgtgatgtctcaagcaaaaatcatg |
393 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32559638 |
ttagtagtctcggattcttatgattcgaggtttgtgatgtctcaagcaaaaatcatg |
32559694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 33010907 - 33011092
Alignment:
| Q |
1 |
tttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcagtttcttaatttcaactgtaacccttttaaaatcag |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |
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| T |
33010907 |
tttggaacttcagctgccttagatgtagctttttcatctatcttcttttgaac------------tttcttaatttcaacttcatcccttttaaaatcag |
33010994 |
T |
|
| Q |
101 |
cttctttctgcttttcaagtttatccagggcagtccgcgctgcattcaacaactccaatccagctgctggtttacaggttaattaatattaaagaactca |
200 |
Q |
| |
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||| ||||||||||||| || ||||| |||| || ||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
33010995 |
attccttctgcttttcaatttcatccaaggcattcagcgctgcattcgccaacttcaa-----ctgctggtttataggttaattaatattaaagaactca |
33011089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 28711125 - 28711086
Alignment:
| Q |
164 |
ctgctggtttacaggttaattaatattaaagaactcaaat |
203 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
28711125 |
ctgcaggtttagaggttaattaatattaaagaactcaaat |
28711086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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