View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928_1D_low_11 (Length: 365)

Name: NF4928_1D_low_11
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928_1D_low_11
NF4928_1D_low_11
[»] chr4 (4 HSPs)
chr4 (95-345)||(40112953-40113203)
chr4 (259-345)||(2662538-2662624)
chr4 (95-152)||(9004961-9005018)
chr4 (98-186)||(2662377-2662465)
[»] chr3 (2 HSPs)
chr3 (95-345)||(6407030-6407280)
chr3 (22-97)||(9168481-9168556)
[»] chr1 (10 HSPs)
chr1 (22-97)||(9245058-9245133)
chr1 (22-97)||(9359327-9359402)
chr1 (22-97)||(8936454-8936529)
chr1 (22-97)||(9335589-9335664)
chr1 (22-95)||(9306840-9306913)
chr1 (22-97)||(8959975-8960050)
chr1 (101-314)||(654109-654322)
chr1 (19-95)||(8945945-8946021)
chr1 (22-97)||(8924813-8924888)
chr1 (22-97)||(9475295-9475370)
[»] chr6 (2 HSPs)
chr6 (22-97)||(15912786-15912861)
chr6 (293-338)||(3690477-3690522)
[»] chr5 (3 HSPs)
chr5 (259-345)||(3019605-3019691)
chr5 (98-186)||(3019444-3019532)
chr5 (286-338)||(32074058-32074110)
[»] chr2 (1 HSPs)
chr2 (286-338)||(28083470-28083522)


Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 95 - 345
Target Start/End: Complemental strand, 40113203 - 40112953
Alignment:
Q  95 cacggcctgatctctcatttgcaatcaacaaactctcccaattcatgcataaacctacatcccttcatcttcaacatttaaagcggctacttcgctacat 194  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40113203 cacggcctgatctctcatttgcaatcaacaagctctcccaattcatgcataaacctatatcccttcatcttcaacatttaaagcggctacttcgctacat 40113104  T
Q  195 taagggaaccattaactttggcatactcttaaagaaaccatcctcattcaatcttcttgcctttacagatgcagactggggaggaaatatggatgaccgc 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40113103 taagggaaccattaactttggcatactcttaaagaaaccatcctcattcaatcttcttgcctttacagatgcagactggggaggaaatatggatgaccgc 40113004  T
Q  295 acctcaacatcagcatatcttatcttttttggaggtaatcctatttcttgg 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40113003 acctcaacatcagcatatcttatcttttttggaggtaatcctatttcttgg 40112953  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 345
Target Start/End: Original strand, 2662538 - 2662624
Alignment:
Q  259 acagatgcagactggggaggaaatatggatgaccgcacctcaacatcagcatatcttatcttttttggaggtaatcctatttcttgg 345  Q
    |||||||| || ||||| || ||||| |||||||| || || ||||| |||||||| || | | |||||||||||||||||||||||    
T  2662538 acagatgctgattggggtggcaatatcgatgaccgtacttccacatctgcatatctaatatatcttggaggtaatcctatttcttgg 2662624  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 9005018 - 9004961
Alignment:
Q  95 cacggcctgatctctcatttgcaatcaacaaactctcccaattcatgcataaacctac 152  Q
    ||||||| ||| ||||||||||  ||||||||||||| ||||||||||| ||||||||    
T  9005018 cacggcccgatgtctcatttgctgtcaacaaactctctcaattcatgcacaaacctac 9004961  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 2662377 - 2662465
Alignment:
Q  98 ggcctgatctctcatttgcaatcaacaaactctcccaattcatgcataaacctacatcccttcatcttcaacatttaaagcggctactt 186  Q
    ||||||| || || ||||| |||||||||||||| |||||||||||||| ||||||   || ||| |||||||| | || |||||||||    
T  2662377 ggcctgacctttcctttgccatcaacaaactctctcaattcatgcataagcctacaagtctccattttcaacatctcaaacggctactt 2662465  T

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Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 95 - 345
Target Start/End: Original strand, 6407030 - 6407280
Alignment:
Q  95 cacggcctgatctctcatttgcaatcaacaaactctcccaattcatgcataaacctacatcccttcatcttcaacatttaaagcggctacttcgctacat 194  Q
    |||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6407030 cacgacctgatctctcatttgcaatcaacaagctctcccaattcttgcataaacctacatcccttcatcttcaacatttaaagcggctacttcgctacat 6407129  T
Q  195 taagggaaccattaactttggcatactcttaaagaaaccatcctcattcaatcttcttgcctttacagatgcagactggggaggaaatatggatgaccgc 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6407130 taagggaaccattaactttggcatactcttaaagaaaccatcctcattcaatcttcttgcctttacagatgcagactggggaggaaatatggatgaccgc 6407229  T
Q  295 acctcaacatcagcatatcttatcttttttggaggtaatcctatttcttgg 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6407230 acctcaacatcagcatatcttatcttttttggaggtaatcctatttcttgg 6407280  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 9168481 - 9168556
Alignment:
Q  22 acatagtatttacccgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccac 97  Q
    ||||||||||||||| |||||||| ||| |  ||||||||||||||| ||||||||||| ||| ||||||||||||    
T  9168481 acatagtatttaccccaaaacagacttagcgttgtgatgttgttttcacaggataactcgtacctcggatcaccac 9168556  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 9245133 - 9245058
Alignment:
Q  22 acatagtatttacccgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccac 97  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9245133 acatagtacttacccgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccac 9245058  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 9359327 - 9359402
Alignment:
Q  22 acatagtatttacccgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccac 97  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  9359327 acatagtatttacctgaaaacagagttaacacggtgatgttgttttcgcaggataactcgtacttcggatcaccac 9359402  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 8936454 - 8936529
Alignment:
Q  22 acatagtatttacccgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccac 97  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  8936454 acatagtatttacccgacaacagagttaacattgtgatgttgttttcgcaggataactcataccttggatcaccac 8936529  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 9335589 - 9335664
Alignment:
Q  22 acatagtatttacccgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccac 97  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||    
T  9335589 acatagtatttacctgaaaacagagttaacgctgtgatgttgttttcgcaggataactcgtactttggatcaccac 9335664  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 9306913 - 9306840
Alignment:
Q  22 acatagtatttacccgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcacc 95  Q
    |||||||||||||| ||||||| |||||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  9306913 acatagtatttacctgaaaacaaagttaacgttgtgatgttgttttcgcaggataactcatacctcggatcacc 9306840  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 8959975 - 8960050
Alignment:
Q  22 acatagtatttacccgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccac 97  Q
    ||||||||||||||||| |||| ||||||   ||||||||||||||||||||||||||| ||| ||||||||||||    
T  8959975 acatagtatttacccgacaacaaagttaaggttgtgatgttgttttcgcaggataactcgtacctcggatcaccac 8960050  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 101 - 314
Target Start/End: Complemental strand, 654322 - 654109
Alignment:
Q  101 ctgatctctcatttgcaatcaacaaactctcccaattcatgcataaacctacatcccttcatcttcaacatttaaagcggctacttcgctacattaaggg 200  Q
    ||||||| ||| |||| |||||||| || || ||||||||| | ||||| ||||| |||||||| |||||| ||||| | |||||||| ||  | ||||     
T  654322 ctgatctttcaattgccatcaacaagctttctcaattcatgtacaaaccaacatcacttcatctgcaacatctaaagagactacttcgttatctaaaggc 654223  T
Q  201 aaccattaactttggcatactcttaaagaaaccatcctcattcaatcttcttgcctttacagatgcagactggggaggaaatatggatgaccgcacctca 300  Q
     |||||||| ||||||||  |  | ||| ||||||| || ||| |||||  ||| || || |||||||||||||| || |||||||| || ||||| ||     
T  654222 taccattaattttggcatttttctgaagcaaccatcatccttccatctttatgctttcacggatgcagactggggtggcaatatggaagatcgcacatcc 654123  T
Q  301 acatcagcatatct 314  Q
    ||||  ||||||||    
T  654122 acatttgcatatct 654109  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 8945945 - 8946021
Alignment:
Q  19 tttacatagtatttacccgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcacc 95  Q
    ||||||| ||||||||| |||| |||  |||||| ||||||||| ||||||||||||||||| ||| ||||||||||    
T  8945945 tttacatggtatttaccagaaagcagctttaacattgtgatgtttttttcgcaggataactcgtacctcggatcacc 8946021  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 8924813 - 8924888
Alignment:
Q  22 acatagtatttacccgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccac 97  Q
    ||||||||||||| ||| || ||||||||   ||| ||||||||||||||||||||||| ||| ||||||||||||    
T  8924813 acatagtatttactcgacaatagagttaaagttgttatgttgttttcgcaggataactcgtacctcggatcaccac 8924888  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 9475370 - 9475295
Alignment:
Q  22 acatagtatttacccgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccac 97  Q
    |||| ||| |||||||||| || |||||||  ||||||||||||| ||||||||||||| ||| ||||||||||||    
T  9475370 acattgtagttacccgaaagcaaagttaacgttgtgatgttgtttacgcaggataactcgtacctcggatcaccac 9475295  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 15912861 - 15912786
Alignment:
Q  22 acatagtatttacccgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccac 97  Q
    |||||||| ||||| ||||||||| ||||   ||||||||||||||||||||||||||| ||  ||||||| ||||    
T  15912861 acatagtacttacctgaaaacagatttaaggttgtgatgttgttttcgcaggataactcgtagctcggatccccac 15912786  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 3690522 - 3690477
Alignment:
Q  293 gcacctcaacatcagcatatcttatcttttttggaggtaatcctat 338  Q
    ||||||| |||||||||||| |||| |||||||| |||||||||||    
T  3690522 gcacctccacatcagcatatattatattttttggtggtaatcctat 3690477  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 345
Target Start/End: Original strand, 3019605 - 3019691
Alignment:
Q  259 acagatgcagactggggaggaaatatggatgaccgcacctcaacatcagcatatcttatcttttttggaggtaatcctatttcttgg 345  Q
    |||||||| || ||||  || ||||| |||||||| || || ||||| |||||||| || | |||||||||||||||||||||||||    
T  3019605 acagatgctgattgggatggcaatattgatgaccgtacttccacatctgcatatctaatatattttggaggtaatcctatttcttgg 3019691  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 3019444 - 3019532
Alignment:
Q  98 ggcctgatctctcatttgcaatcaacaaactctcccaattcatgcataaacctacatcccttcatcttcaacatttaaagcggctactt 186  Q
    ||||||| || || ||||| |||||||||||||| |||||||||||||| ||||||   || ||| |||||||| | || |||||||||    
T  3019444 ggcctgacctttcctttgccatcaacaaactctctcaattcatgcataagcctacaagtctccattttcaacatctcaaacggctactt 3019532  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 338
Target Start/End: Original strand, 32074058 - 32074110
Alignment:
Q  286 gatgaccgcacctcaacatcagcatatcttatcttttttggaggtaatcctat 338  Q
    ||||| |||||||| |||||||||||| |||| |||||||| |||||||||||    
T  32074058 gatgatcgcacctccacatcagcatatattatattttttggtggtaatcctat 32074110  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 28083522 - 28083470
Alignment:
Q  286 gatgaccgcacctcaacatcagcatatcttatcttttttggaggtaatcctat 338  Q
    ||||| |||||||| |||||||||||| |||| |||||||| |||||||||||    
T  28083522 gatgatcgcacctccacatcagcatatattatattttttggtggtaatcctat 28083470  T

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