View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_1D_low_15 (Length: 319)
Name: NF4928_1D_low_15
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_low_15 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 4775890 - 4775587
Alignment:
| Q |
13 |
tgaatatcgtactatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaacggcaccaacaatattctta |
112 |
Q |
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| T |
4775890 |
tgaatatcgtactatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacaatattctaa |
4775791 |
T |
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| Q |
113 |
gaaaacattggagctacatctctatgtgcaaaccctgtctttcagtactctaggatgaagcatattgccatagattatcattttgttcgcgatctcgttg |
212 |
Q |
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| T |
4775790 |
gacaacattggagctacatatctatgtgcaaaccctgtctttca---ctctaggatgaagcatattgccatagattatcattttgttcgcgatctcgttg |
4775694 |
T |
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| Q |
213 |
ccgccaagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacggcatcacttccttaaaga |
312 |
Q |
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| T |
4775693 |
ccgccaagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacggcatcacttccttaaaga |
4775594 |
T |
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| Q |
313 |
caagatt |
319 |
Q |
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| T |
4775593 |
caagatt |
4775587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 43061251 - 43060945
Alignment:
| Q |
13 |
tgaatatcgtactatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaacggcaccaacaatattctta |
112 |
Q |
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| T |
43061251 |
tgaatatcggactatagcagccactactcaggaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacgatattctca |
43061152 |
T |
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| Q |
113 |
gaaaacattggagctacatctctatgtgcaaaccctgtctttcagtactctaggatgaagcatattgccatagattatcattttgttcgcgatctcgt-- |
210 |
Q |
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| T |
43061151 |
gacaacattagagctacatatctatgtgcaaaccctgtttttc---actataggatgaaacacattgccatagattatcattttgtttgcgatctcgttg |
43061055 |
T |
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| Q |
211 |
-tgccgccaagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacggcatcacttccttaa |
309 |
Q |
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| T |
43061054 |
ctgctgccaagaagcttcaagtttcacatgtcccaacaagtcatcagctacccgatcttctcacaaagccgttatcctcggtacgacatcacttccttaa |
43060955 |
T |
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| Q |
310 |
agacaagatt |
319 |
Q |
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| T |
43060954 |
agacaagatt |
43060945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 45192874 - 45192914
Alignment:
| Q |
116 |
aacattggagctacatctctatgtgcaaaccctgtctttca |
156 |
Q |
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| T |
45192874 |
aacattggagctacatatctatgtgcaaaccctgtccttca |
45192914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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