View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928_1D_low_16 (Length: 310)

Name: NF4928_1D_low_16
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928_1D_low_16
NF4928_1D_low_16
[»] chr6 (9 HSPs)
chr6 (21-310)||(32685119-32685403)
chr6 (42-310)||(32683409-32683672)
chr6 (59-227)||(33010662-33010824)
chr6 (238-310)||(33010870-33010942)
chr6 (235-289)||(33011205-33011259)
chr6 (235-287)||(28734759-28734811)
chr6 (246-293)||(28711376-28711423)
chr6 (255-293)||(28711262-28711300)
chr6 (44-103)||(34925139-34925199)


Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 21 - 310
Target Start/End: Complemental strand, 32685403 - 32685119
Alignment:
Q  21 aattagtgcagaataaatacaatagttatataggaatcagtacataataaccagacacgcatagacaagatttgcgagcttggaacttcccaagtgtcta 120  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32685403 aattagtacagaataaatacaatagttatataggaatcagtacataataaccagacacgcatagacaagatttgcgagcttggcacttcccaagtgtcta 32685304  T
Q  121 tctaacactcacaacttaaggataaaacagaacatagttcagttttcctttcttaccctacacaactgcctaattttatttacagccttcaacatccttt 220  Q
        | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  32685303 ----aaactcacaacttaaggataaaacagaacatagttcagttttcctttcttactatacacaactgcctaattttatttacagccttcaacatccttt 32685208  T
Q  221 atttgaatttcggcttttggatttctttcatcttaagcttcattctcctgctggtttggaacttcagctgccttagatgtaccttcttca 310  Q
    ||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32685207 atttgaacttcggcttttgga-atctttcatcttaagcttcattctcctgctggtttggaacttgagctgccttagatgtaccttcttca 32685119  T

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Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 42 - 310
Target Start/End: Complemental strand, 32683672 - 32683409
Alignment:
Q  42 atagttatataggaatcagtacataataaccagacacgcatagacaagatttgcgagcttggaacttcccaagtgtctatctaacactcacaacttaagg 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    | |||||||||||||||    
T  32683672 atagttatataggaatcagtacataataaccagacacgcatagacaagatttgcgagcttggcacttcccaagtgtcta----aaactcacaacttaagg 32683577  T
Q  142 ataaaacagaacatagttcagttttcctttcttaccctacacaactgcctaattttatttacagccttcaacatcctttatttgaatttcggcttttgga 241  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32683576 ataaaacagaacatagttcagttttcctttcttactctacacaactgcctaattttatttacagccttcaacatcctttatttgaacttcggcttttgga 32683477  T
Q  242 tttctttcatcttaagcttcattctcctgctggtttggaacttcagctgccttagatgtaccttcttca 310  Q
      ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32683476 -atctttcatcttaagcttcattctcctgctggtttggaacttgagctgccttagatgtaccttcttca 32683409  T

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Target: chr6; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 59 - 227
Target Start/End: Original strand, 33010662 - 33010824
Alignment:
Q  59 agtacataataaccagacacgcatagac-aagatttgcgagcttggaacttcccaagtgtctatctaacactcacaacttaaggataaaacagaacatag 157  Q
    ||||||||||||||| |||||||||||| ||||||||| |||||||  |||||||||| |||||||      |||||||| |||||||||| ||||||||    
T  33010662 agtacataataaccaaacacgcatagaccaagatttgcaagcttggctcttcccaagtatctatct------cacaacttgaggataaaacggaacatag 33010755  T
Q  158 ttcagttttcctttcttaccctacacaactgcctaattttatttacagccttcaacatcctttatttgaa 227  Q
    |||| ||| | |||||||| | |||||||||| |||||||||||||| ||||||||||||||||||||||    
T  33010756 ttcaatttccttttcttactccacacaactgcttaattttatttaca-ccttcaacatcctttatttgaa 33010824  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 33010870 - 33010942
Alignment:
Q  238 tggatttctttcatcttaagcttcattctcctgctggtttggaacttcagctgccttagatgtaccttcttca 310  Q
    ||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  33010870 tggatgtctttcatcttaagcttcgtactcctgctggtttggaacttcagctgccttagatgtagctttttca 33010942  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 33011259 - 33011205
Alignment:
Q  235 ttttggatttctttcatcttaagcttcattctcctgctggtttggaacttcagct 289  Q
    ||||||||||||||| |||||| |||| |||||||||||||||||||||||||||    
T  33011259 ttttggatttctttcttcttaatcttcgttctcctgctggtttggaacttcagct 33011205  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 28734811 - 28734759
Alignment:
Q  235 ttttggatttctttcatcttaagcttcattctcctgctggtttggaacttcag 287  Q
    |||||||| | ||||||| ||||||||| ||| ||||||||||||||||||||    
T  28734811 ttttggatgtttttcatcataagcttcaatcttctgctggtttggaacttcag 28734759  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 28711423 - 28711376
Alignment:
Q  246 tttcatcttaagcttcattctcctgctggtttggaacttcagctgcct 293  Q
    |||||| |||||||||| ||||||| |||||||||||||||| |||||    
T  28711423 tttcatgttaagcttcaatctcctgttggtttggaacttcaggtgcct 28711376  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 293
Target Start/End: Complemental strand, 28711300 - 28711262
Alignment:
Q  255 aagcttcattctcctgctggtttggaacttcagctgcct 293  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  28711300 aagcttcaatctcctgctggtttggaacttcaggtgcct 28711262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 34925139 - 34925199
Alignment:
Q  44 agttatataggaatcagtacataataaccagacacgcataga-caagatttgcgagcttgg 103  Q
    |||||||||||||  |||||| |||||| |||||| |||||| ||||||||| ||||||||    
T  34925139 agttatataggaaatagtacagaataacaagacacacatagaccaagatttgagagcttgg 34925199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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