View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_1D_low_19 (Length: 283)
Name: NF4928_1D_low_19
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_low_19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 29 - 283
Target Start/End: Original strand, 30415040 - 30415293
Alignment:
| Q |
29 |
atgatttaagcatccttgattaaatatatatcgagtgcagaaaaatacataacaaagagataccaaaaagagaactactaaaagctgttaaattggagct |
128 |
Q |
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| T |
30415040 |
atgatttaagcatccttgattaaatatatatcgagtgcagaaaaatacataacaaagagataccaaaa-gagaactactaaaagcggttaaattggagct |
30415138 |
T |
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| Q |
129 |
tgaaggggatgacatagctataaataagggaagattacagatttaatcatgatgaaaacagattcaaaacctagctaaatttttatttggtgttgcataa |
228 |
Q |
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| T |
30415139 |
tgaaggggatgacatagctataaataagggaagattacatatttaatcatgatgaaaacagattcaaaacctatctaaatttttatttggtgttgtataa |
30415238 |
T |
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| Q |
229 |
tcaatcatatatggaatgagaattaattcttacagtacatattttcgtctctcaa |
283 |
Q |
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| T |
30415239 |
tcaatcatatatggaatgagaattaattcttacagtacatattttcgtctctcaa |
30415293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30414837 - 30414875
Alignment:
| Q |
1 |
atattttcctaatcagaattat-aaagctatgatttaag |
38 |
Q |
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| T |
30414837 |
atattttcctaatcagaattataaaagctatgatttaag |
30414875 |
T |
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