View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_1D_low_25 (Length: 259)
Name: NF4928_1D_low_25
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 22218895 - 22219001
Alignment:
| Q |
133 |
gtgctcttcacgccgttatcagattcctcaacctatttagtaacatccaatcacaaactcttcaatataacaactcagatataactataaaattaaagta |
232 |
Q |
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| T |
22218895 |
gtgctcttcacgcccttatcagattcctcaacctatttagtaacatccaatcacaaactcttcaatataacaactcagatataactataaaattaaagta |
22218994 |
T |
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| Q |
233 |
ctagatc |
239 |
Q |
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||||||| |
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| T |
22218995 |
ctagatc |
22219001 |
T |
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Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 18542190 - 18542286
Alignment:
| Q |
24 |
acccccgggtggaagttggacaagccatggagtaaaaggaaagggtggtaaaggaggatcaaaaggtggatcaagcacaggaggaaatggcagtgaa |
120 |
Q |
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| T |
18542190 |
acccccgggtggaagttggacaagccatggagtaaaaggaaagggtggtaaaggaggatcaaaaggtggatcaggcacaggaggaaatggtagtgaa |
18542286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 18555277 - 18555343
Alignment:
| Q |
54 |
agtaaaaggaaagggtggtaaaggaggatcaaaaggtggatcaagcacaggaggaaatggcagtgaa |
120 |
Q |
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| T |
18555277 |
agtaaaaggaaagggtggtaaaggaggatcaaaaggtggatcaggcacaggaggaaatggcggtgaa |
18555343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 18550295 - 18550358
Alignment:
| Q |
50 |
atggagtaaaaggaaagggtggtaaaggaggatcaaaaggtggatcaagcacaggaggaaatgg |
113 |
Q |
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| T |
18550295 |
atggagtaaaaggaaatggtggtaaaggaggatcaaagggtggatcaggctcaggcgaaaatgg |
18550358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 18365615 - 18365574
Alignment:
| Q |
154 |
gattcctcaacctatttagtaacatccaatcacaaactcttc |
195 |
Q |
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| T |
18365615 |
gattcttcaacctgtttagtaacaaccaatcacaaactcttc |
18365574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 36597310 - 36597351
Alignment:
| Q |
154 |
gattcctcaacctatttagtaacatccaatcacaaactcttc |
195 |
Q |
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||||| ||||||| |||||||||| ||||||||||||||||| |
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| T |
36597310 |
gattcttcaacctgtttagtaacaaccaatcacaaactcttc |
36597351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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