View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_1D_low_27 (Length: 259)
Name: NF4928_1D_low_27
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_low_27 |
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| [»] scaffold0005 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 253
Target Start/End: Original strand, 16919432 - 16919678
Alignment:
| Q |
7 |
ttagagttgctagcagacagagaaacatttacagtgatatgagatatagcactcttccaatgaatcctcctattttggaatctgcattgattcctagcat |
106 |
Q |
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| T |
16919432 |
ttagagttgctagcagatagggaaacatttacagtgatatgagatatagcactcttccaatgaatcctcctattttggaatctgcattgattcctagcgt |
16919531 |
T |
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| Q |
107 |
accaaatagcagaaatgatgttaacgatagcagcaataattgttaatctacattgaggagaccaacctcttccactaaggccccaaatttcttccaacgc |
206 |
Q |
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| T |
16919532 |
accaaatagcagaaataatgttaacaacagcagcaataattgttaatctacactgtggagaccaacctctttcactaaggccccaaatttcttccaaagc |
16919631 |
T |
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| Q |
207 |
tgaaaaatgaagagattggttgagaattgaagcaagccaacaccaaa |
253 |
Q |
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| T |
16919632 |
tgaaaaatgaagagattggttgagatttgaagccagccaacaccaaa |
16919678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 253
Target Start/End: Original strand, 14627944 - 14628039
Alignment:
| Q |
158 |
attgaggagaccaacctcttccactaaggccccaaatttcttccaacgctgaaaaatgaagagattggttgagaattgaagcaagccaacaccaaa |
253 |
Q |
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| T |
14627944 |
attgaggtgaccaacctctcgcactcaaactccaaatttcctctaaagctaagaaatgaagggattggttgagaatagaagccaaccaacaccaaa |
14628039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 14627805 - 14627905
Alignment:
| Q |
19 |
gcagacagagaaacatttacagtgatatgagatatagcactcttccaatgaatcctcctattttggaatctgcattgattcctagcataccaaatagcag |
118 |
Q |
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| T |
14627805 |
gcagacaaagaaacattaacaatgatttgagatatgacactttcccaatgaatcttcctgtttttgaatctataagtatttctagcattccaaatagcag |
14627904 |
T |
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| Q |
119 |
a |
119 |
Q |
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| T |
14627905 |
a |
14627905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 253
Target Start/End: Complemental strand, 189439 - 189344
Alignment:
| Q |
158 |
attgaggagaccaacctcttccactaaggccccaaatttcttccaacgctgaaaaatgaagagattggttgagaattgaagcaagccaacaccaaa |
253 |
Q |
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| T |
189439 |
attgaggtgaccaacctctcgcactcaaactccaaatttcctctaaagctaagaaatgaagggattggttgagaatagaagccaaccaacaccaaa |
189344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 189578 - 189478
Alignment:
| Q |
19 |
gcagacagagaaacatttacagtgatatgagatatagcactcttccaatgaatcctcctattttggaatctgcattgattcctagcataccaaatagcag |
118 |
Q |
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| T |
189578 |
gcagacaaagaaacattaacaatgatttgagatatgacactttcccaatgaatcttcctgtttttgaatctataagtatttctagcattccaaatagcag |
189479 |
T |
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| Q |
119 |
a |
119 |
Q |
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| T |
189478 |
a |
189478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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